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Bacon" Date: Mon, 21 May 2018 22:15:26 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r470582 - in head/biology: . clustal-omega X-SVN-Group: ports-head X-SVN-Commit-Author: jwb X-SVN-Commit-Paths: in head/biology: . clustal-omega X-SVN-Commit-Revision: 470582 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.26 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Mon, 21 May 2018 22:15:28 -0000 Author: jwb Date: Mon May 21 22:15:26 2018 New Revision: 470582 URL: https://svnweb.freebsd.org/changeset/ports/470582 Log: biology/clustal-omega: Multiple alignment of nucleic acid and protein, replaces clustalw Approved by: jrm Differential Revision: https://reviews.freebsd.org/D15516 Added: head/biology/clustal-omega/ head/biology/clustal-omega/Makefile (contents, props changed) head/biology/clustal-omega/distinfo (contents, props changed) head/biology/clustal-omega/pkg-descr (contents, props changed) head/biology/clustal-omega/pkg-plist (contents, props changed) Modified: head/biology/Makefile Modified: head/biology/Makefile ============================================================================== --- head/biology/Makefile Mon May 21 21:45:48 2018 (r470581) +++ head/biology/Makefile Mon May 21 22:15:26 2018 (r470582) @@ -19,6 +19,7 @@ SUBDIR += cd-hit SUBDIR += cdbfasta SUBDIR += chemeq + SUBDIR += clustal-omega SUBDIR += clustalw SUBDIR += clustalx SUBDIR += consed Added: head/biology/clustal-omega/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/clustal-omega/Makefile Mon May 21 22:15:26 2018 (r470582) @@ -0,0 +1,20 @@ +# $FreeBSD$ + +PORTNAME= clustal-omega +DISTVERSION= 1.2.4 +CATEGORIES= biology +MASTER_SITES= http://www.clustal.org/omega/ + +MAINTAINER= jwb@FreeBSD.org +COMMENT= Multiple alignment of nucleic acid and protein, replaces clustalw + +LICENSE= GPLv2 +LICENSE_FILE= ${WRKSRC}/COPYING + +LIB_DEPENDS= libargtable2.so:devel/argtable + +USES= libtool localbase + +GNU_CONFIGURE= yes + +.include Added: head/biology/clustal-omega/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/clustal-omega/distinfo Mon May 21 22:15:26 2018 (r470582) @@ -0,0 +1,3 @@ +TIMESTAMP = 1526846209 +SHA256 (clustal-omega-1.2.4.tar.gz) = 8683d2286d663a46412c12a0c789e755e7fd77088fb3bc0342bb71667f05a3ee +SIZE (clustal-omega-1.2.4.tar.gz) = 1170516 Added: head/biology/clustal-omega/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/clustal-omega/pkg-descr Mon May 21 22:15:26 2018 (r470582) @@ -0,0 +1,8 @@ +Clustal Omega is the latest addition to the Clustal family. It offers a +significant increase in scalability over previous versions, allowing hundreds +of thousands of sequences to be aligned in only a few hours. It will also make +use of multiple processors, where present. In addition, the quality of +alignments is superior to previous versions, as measured by a range of popular +benchmarks. + +WWW: http://www.clustal.org/omega/ Added: head/biology/clustal-omega/pkg-plist ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/clustal-omega/pkg-plist Mon May 21 22:15:26 2018 (r470582) @@ -0,0 +1,32 @@ +bin/clustalo +include/clustalo/clustal-omega-config.h +include/clustalo/clustal-omega.h +include/clustalo/clustal/hhalign_wrapper.h +include/clustalo/clustal/ktuple_pair.h +include/clustalo/clustal/log.h +include/clustalo/clustal/mbed.h +include/clustalo/clustal/muscle_tree.h +include/clustalo/clustal/pair_dist.h +include/clustalo/clustal/progress.h +include/clustalo/clustal/seq.h +include/clustalo/clustal/symmatrix.h +include/clustalo/clustal/tree.h +include/clustalo/clustal/util.h +include/clustalo/clustal/weights.h +include/clustalo/hhalign/general.h +include/clustalo/hhalign/hhfunc.h +include/clustalo/squid/gki.h +include/clustalo/squid/gsi64.h +include/clustalo/squid/msa.h +include/clustalo/squid/rk.h +include/clustalo/squid/sqfuncs.h +include/clustalo/squid/squid.h +include/clustalo/squid/sre_random.h +include/clustalo/squid/ssi.h +include/clustalo/squid/stockholm.h +include/clustalo/squid/stopwatch.h +include/clustalo/squid/vectorops.h +include/clustalo/squid/version.h +lib/libclustalo.a +libdata/pkgconfig/clustalo.pc +%%DOCSDIR%%/README