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Date:      Fri, 11 May 2001 11:32:55 -0500 (CDT)
From:      bdodson@siegfried.utmb.edu
To:        FreeBSD-gnats-submit@freebsd.org
Subject:   ports/27273: Update port by maintainer: biology/nab
Message-ID:  <200105111632.f4BGWt754529@histidine.utmb.edu>

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>Number:         27273
>Category:       ports
>Synopsis:       Update port by maintainer: biology/nab
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    freebsd-ports
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          change-request
>Submitter-Id:   current-users
>Arrival-Date:   Fri May 11 09:40:01 PDT 2001
>Closed-Date:
>Last-Modified:
>Originator:     M. L. Dodson
>Release:        FreeBSD 4.3-RELEASE i386
>Organization:
University of Texas Medical Branch
>Environment:
System: FreeBSD histidine.utmb.edu 4.3-RELEASE FreeBSD 4.3-RELEASE #0: Mon Apr 30 16:46:47 CDT 2001 bdodson@valine.utmb.edu:/usr/obj/usr/src/sys/HISTIDINE i386


>Description:
Please delete the following in the files directory:

patch-ad patch-ae patch-af patch-ag patch-ah patch-ai

In addition, the following should be added as patch-ab:

*** examples/program_7.nab.orig	Thu Jan 14 16:53:07 1999
--- examples/program_7.nab	Thu Jan 14 16:53:24 1999
***************
*** 9,15 ****
  cseq = wc_complement( "acgtacgt", "dna.amber94.rlb", "dna" );
  
  m = wc_helix( seq, "dna.amber94.rlb", "dna", cseq, "dna.amber94.rlb",
!          "dna", 2.25, -4.96, 36.0, 4.38, "" );
  
  b = newbounds(m, "");
  allocate xyz[ 4*m.natoms ];
--- 9,15 ----
  cseq = wc_complement( "acgtacgt", "dna.amber94.rlb", "dna" );
  
  m = wc_helix( seq, "dna.amber94.rlb", "dna", cseq, "dna.amber94.rlb",
!          "dna", 2.25, -4.96, 36.0, 3.38, "" );
  
  b = newbounds(m, "");
  allocate xyz[ 4*m.natoms ];


>How-To-Repeat:

>Fix:

begin 644 nab.diff.gz
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MKD/1N>O8IGJ\-GTJQS#F$[!T_E1E<OZX)83UI'%"(N0+7@=L:6NC(@UC?]GR
&6GL3>@``
`
end
>Release-Note:
>Audit-Trail:
>Unformatted:

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