Date: Sat, 3 Jun 2017 01:12:43 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 110mips64-quarterly][science/openbabel] Failed for openbabel-2.3.2_2 in configure Message-ID: <201706030112.v531Chfw065627@beefy16.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: ports@FreeBSD.org Last committer: jbeich@FreeBSD.org Ident: $FreeBSD: branches/2017Q2/science/openbabel/Makefile 432092 2017-01-21 23:24:18Z jbeich $ Log URL: http://beefy16.nyi.freebsd.org/data/110mips64-quarterly/442297/logs/openbabel-2.3.2_2.log Build URL: http://beefy16.nyi.freebsd.org/build.html?mastername=110mips64-quarterly&build=442297 Log: ====>> Building science/openbabel build started at Sat Jun 3 01:11:02 UTC 2017 port directory: /usr/ports/science/openbabel building for: FreeBSD 110mips64-quarterly-job-27 11.0-RELEASE-p10 FreeBSD 11.0-RELEASE-p10 r317487 mips maintained by: ports@FreeBSD.org Makefile ident: $FreeBSD: branches/2017Q2/science/openbabel/Makefile 432092 2017-01-21 23:24:18Z jbeich $ Poudriere version: 3.1.19 Host OSVERSION: 1200031 Jail OSVERSION: 1100122 Job Id: 27 ---Begin Environment--- SHELL=/bin/csh UNAME_p=mips64 UNAME_m=mips ABI_FILE=/usr/lib/crt1.o OSVERSION=1100122 UNAME_v=FreeBSD 11.0-RELEASE-p10 r317487 UNAME_r=11.0-RELEASE-p10 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/110mips64-quarterly/ref QEMU_EMULATING=1 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=openbabel-2.3.2_2 OLDPWD=/ PWD=/usr/local/poudriere/data/.m/110mips64-quarterly/ref/.p/pool MASTERNAME=110mips64-quarterly SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root POUDRIERE_VERSION=3.1.19 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for openbabel-2.3.2_2: CAIRO=off: PNG support via cairo library PYTHON=on: Python bindings or support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/openbabel/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/openbabel/work HOME=/wrkdirs/usr/ports/science/openbabel/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/openbabel/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/openbabel/work HOME=/wrkdirs/usr/ports/science/openbabel/work TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -G0 -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 -fno-strict-aliasing -std=gnu++98" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- VERSION="2.3.2" CAIRO="@comment " NO_CAIRO="" PYTHON="" NO_PYTHON="@comment " CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd11 PYTHON_PYOEXTENSION=pyo PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/openbabel" EXAMPLESDIR="share/examples/openbabel" DATADIR="share/openbabel" WWWDIR="www/openbabel" ETCDIR="etc/openbabel" --End PLIST_SUB-- --SUB_LIST-- CAIRO="@comment " NO_CAIRO="" PYTHON="" NO_PYTHON="@comment " PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/openbabel DOCSDIR=/usr/local/share/doc/openbabel EXAMPLESDIR=/usr/local/share/examples/openbabel WWWDIR=/usr/local/www/openbabel ETCDIR=/usr/local/etc/openbabel --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes MACHINE=mips MACHINE_ARCH=mips64 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### ARCH=mips64 CONFIGURE_MAX_CMD_LEN=262144 OPSYS=FreeBSD OSREL=11.0 OSVERSION=1100122 PYTHONBASE=/usr/local UID=0 _JAVA_OS_LIST_REGEXP=native\|linux _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ _OSRELEASE=11.0-RELEASE-p10 #### Misc Poudriere #### GID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 131072 stack size (kbytes, -s) 8192 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> NOTICE: The openbabel port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: <snip> ===> Installing existing package /packages/All/eigen-3.2.10.txz [110mips64-quarterly-job-27] Installing eigen-3.2.10... [110mips64-quarterly-job-27] Extracting eigen-3.2.10: .......... done ===> openbabel-2.3.2_2 depends on file: /usr/local/include/eigen3/Eigen/Eigen - found ===> Returning to build of openbabel-2.3.2_2 ===> openbabel-2.3.2_2 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-3.7.2.txz [110mips64-quarterly-job-27] Installing cmake-3.7.2... [110mips64-quarterly-job-27] `-- Installing cmake-modules-3.7.2... [110mips64-quarterly-job-27] `-- Extracting cmake-modules-3.7.2: .......... done [110mips64-quarterly-job-27] `-- Installing curl-7.54.0... [110mips64-quarterly-job-27] | `-- Installing ca_root_nss-3.30.2... [110mips64-quarterly-job-27] | `-- Extracting ca_root_nss-3.30.2: ........ done [110mips64-quarterly-job-27] | `-- Installing libnghttp2-1.21.0... [110mips64-quarterly-job-27] | `-- Extracting libnghttp2-1.21.0: .......... done [110mips64-quarterly-job-27] `-- Extracting curl-7.54.0: .......... done [110mips64-quarterly-job-27] `-- Installing expat-2.2.0_1... [110mips64-quarterly-job-27] `-- Extracting expat-2.2.0_1: .......... done [110mips64-quarterly-job-27] `-- Installing jsoncpp-1.8.0_2... [110mips64-quarterly-job-27] `-- Extracting jsoncpp-1.8.0_2: .......... done [110mips64-quarterly-job-27] `-- Installing libarchive-3.3.1,1... [110mips64-quarterly-job-27] | `-- Installing liblz4-1.7.5,1... [110mips64-quarterly-job-27] | `-- Extracting liblz4-1.7.5,1: .......... done [110mips64-quarterly-job-27] | `-- Installing lzo2-2.10_1... [110mips64-quarterly-job-27] | `-- Extracting lzo2-2.10_1: .......... done [110mips64-quarterly-job-27] `-- Extracting libarchive-3.3.1,1: .......... done [110mips64-quarterly-job-27] `-- Installing libuv-1.11.0... [110mips64-quarterly-job-27] `-- Extracting libuv-1.11.0: .......... done [110mips64-quarterly-job-27] Extracting cmake-3.7.2: .......... done Message from ca_root_nss-3.30.2: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** ===> openbabel-2.3.2_2 depends on file: /usr/local/bin/cmake - found ===> Returning to build of openbabel-2.3.2_2 ===> openbabel-2.3.2_2 depends on file: /usr/local/bin/python2.7 - not found ===> Installing existing package /packages/All/python27-2.7.13_3.txz [110mips64-quarterly-job-27] Installing python27-2.7.13_3... [110mips64-quarterly-job-27] `-- Installing gettext-runtime-0.19.8.1_1... [110mips64-quarterly-job-27] | `-- Installing indexinfo-0.2.6... [110mips64-quarterly-job-27] | `-- Extracting indexinfo-0.2.6: .... done [110mips64-quarterly-job-27] `-- Extracting gettext-runtime-0.19.8.1_1: .......... done [110mips64-quarterly-job-27] `-- Installing libffi-3.2.1... [110mips64-quarterly-job-27] `-- Extracting libffi-3.2.1: .......... done [110mips64-quarterly-job-27] `-- Installing readline-6.3.8... [110mips64-quarterly-job-27] `-- Extracting readline-6.3.8: .......... done [110mips64-quarterly-job-27] Extracting python27-2.7.13_3: .......... done Message from python27-2.7.13_3: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== ===> openbabel-2.3.2_2 depends on file: /usr/local/bin/python2.7 - found ===> Returning to build of openbabel-2.3.2_2 =========================================================================== =======================<phase: lib-depends >============================ ===> openbabel-2.3.2_2 depends on shared library: libxml2.so - not found ===> Installing existing package /packages/All/libxml2-2.9.4.txz [110mips64-quarterly-job-27] Installing libxml2-2.9.4... [110mips64-quarterly-job-27] Extracting libxml2-2.9.4: .......... done ===> openbabel-2.3.2_2 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so) ===> Returning to build of openbabel-2.3.2_2 =========================================================================== =======================<phase: configure >============================ ===> Configuring for openbabel-2.3.2_2 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/science/openbabel/work/.build -- The C compiler identification is GNU 4.2.1 -- The CXX compiler identification is GNU 4.2.1 -- Check for working C compiler: /nxb-bin/usr/bin/cc -- Check for working C compiler: /nxb-bin/usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /nxb-bin/usr/bin/c++ -- Check for working CXX compiler: /nxb-bin/usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Using included inchi library. -- Found LibXml2: /usr/local/lib/libxml2.so (found version "2.9.4") -- Found ZLIB: /usr/lib/libz.so (found version "1.2.8") -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) -- Looking for conio.h -- Looking for conio.h - not found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for time.h -- Looking for time.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for rpc/xdr.h -- Looking for rpc/xdr.h - not found -- Looking for regex.h -- Looking for regex.h - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for rint -- Looking for rint - not found -- Looking for snprintf -- Looking for snprintf - found -- Looking for sranddev -- Looking for sranddev - found -- Looking for strcasecmp CMake Error: Generator: execution of make failed. Make command was: "/usr/bin/make" "cmTC_ba994/fast" -- Looking for strcasecmp - not found -- Looking for strncasecmp -- Looking for strncasecmp - found -- Looking for dlopen in dl -- Looking for dlopen in dl - not found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of clock_t -- Check size of clock_t - done -- Performing Test SCANDIR_NEEDS_CONST -- Performing Test SCANDIR_NEEDS_CONST - Failed -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success -- Found Eigen3: /usr/local/include/eigen3 (Required is at least version "2.91.0") -- Could NOT find Cairo. PNG output will NOT be supported. -- Looking for getopt -- Looking for getopt - found -- GUI will not be built CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:54: Syntax Warning in cmake code at column 14 Argument not separated from preceding token by whitespace. Call Stack (most recent call first): test/CMakeLists.txt:171 (include) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:54: Syntax Warning in cmake code at column 31 Argument not separated from preceding token by whitespace. Call Stack (most recent call first): test/CMakeLists.txt:171 (include) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:57: Syntax Warning in cmake code at column 25 Argument not separated from preceding token by whitespace. Call Stack (most recent call first): test/CMakeLists.txt:171 (include) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:57: Syntax Warning in cmake code at column 39 Argument not separated from preceding token by whitespace. Call Stack (most recent call first): test/CMakeLists.txt:171 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/local/bin/python2.7 (found version "2.7.13") -- Found PythonLibs: /usr/local/lib/libpython2.7.so (found version "2.7.13") -- Python bindings will be compiled -- Configuring incomplete, errors occurred! See also "/wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles/CMakeOutput.log". See also "/wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles/CMakeError.log". *** Error code 1 Stop. make: stopped in /usr/ports/science/openbabel
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