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Date:      Tue, 29 Apr 2008 11:22:27 -0300
From:      Fernan Aguero <fernan@iib.unsam.edu.ar>
To:        FreeBSD GNATS PR Submission <freebsd-gnats-submit@FreeBSD.org>
Subject:   ports/123218: [MAINTAINER] update blat to latest version
Message-ID:  <20080429142227.GA32224@iib.unsam.edu.ar>
Resent-Message-ID: <200804291430.m3TEU3rE007997@freefall.freebsd.org>

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>Number:         123218
>Category:       ports
>Synopsis:       [MAINTAINER] update blat to latest version
>Confidential:   no
>Severity:       serious
>Priority:       medium
>Responsible:    freebsd-ports-bugs
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          maintainer-update
>Submitter-Id:   current-users
>Arrival-Date:   Tue Apr 29 14:30:03 UTC 2008
>Closed-Date:
>Last-Modified:
>Originator:     Fernan Aguero
>Release:        FreeBSD 6.3-RELEASE-p1 i386
>Organization:
IIB-UNSAM
>Environment:

  FreeBSD gama.iib.unsam.edu.ar 6.3-RELEASE-p1 FreeBSD 6.3-RELEASE-p1 #0:
  Wed Apr  2 18:37:14 ART 2008
  fernan@gama.iib.unsam.edu.ar:/usr/obj/freebsd/freebsd-6.3/src/sys/GAMA
  i386

	<machine, os, target, libraries (multiple lines)>
>Description:
	<precise description of the problem (multiple lines)>
	
 BLAT is marked as BROKEN because it does not compile with GCC 4.2
 http://portsmon.freebsd.org/portoverview.py?category=biology&portname=blat

 This update brings blat to version 34, which fixes this issue 
 (tested with USE_GCC=4.2+ on FreeBSD-6.3, i386)

>How-To-Repeat:
	<code/input/activities to reproduce the problem (multiple lines)>
	
>Fix:

	<how to correct or work around the problem, if known (multiple lines)>



--- blat.diff begins here ---
diff -ruN --exclude CVS /usr/ports/biology/blat/Makefile blat/Makefile
--- /usr/ports/biology/blat/Makefile	2008-01-30 22:36:17.000000000 -0300
+++ blat/Makefile	2008-04-29 08:47:44.000000000 -0300
@@ -7,7 +7,7 @@
 #
 
 PORTNAME=	blat
-PORTVERSION=	33
+PORTVERSION=	34
 CATEGORIES=	biology
 MASTER_SITES=	http://www.soe.ucsc.edu/~kent/src/
 DISTNAME=	${PORTNAME}Src${PORTVERSION}
diff -ruN --exclude CVS /usr/ports/biology/blat/distinfo blat/distinfo
--- /usr/ports/biology/blat/distinfo	2006-03-15 07:26:11.000000000 -0300
+++ blat/distinfo	2008-04-29 08:49:14.000000000 -0300
@@ -1,3 +1,3 @@
-MD5 (blatSrc33.zip) = 5f9d3a4a88e57dfc435b5dd465209918
-SHA256 (blatSrc33.zip) = 4ca932721f529d815e64b51940c94d8136faec52c6b8bf8c3fcd3706337d9a29
-SIZE (blatSrc33.zip) = 1308517
+MD5 (blatSrc34.zip) = c8637145ea70acf1ced1a670d37d7b98
+SHA256 (blatSrc34.zip) = b764828fdf8ef4c9994ae4b6148340a776493475edb573b6adf63ae7ca9b2629
+SIZE (blatSrc34.zip) = 2142975
--- blat.diff ends here ---


--4SFOXa2GPu3tIq4H
Content-Type: text/x-diff; charset=us-ascii
Content-Disposition: attachment; filename="blat.diff"

diff -ruN --exclude CVS /usr/ports/biology/blat/Makefile blat/Makefile
--- /usr/ports/biology/blat/Makefile	2008-01-30 22:36:17.000000000 -0300
+++ blat/Makefile	2008-04-29 08:47:44.000000000 -0300
@@ -7,7 +7,7 @@
 #
 
 PORTNAME=	blat
-PORTVERSION=	33
+PORTVERSION=	34
 CATEGORIES=	biology
 MASTER_SITES=	http://www.soe.ucsc.edu/~kent/src/
 DISTNAME=	${PORTNAME}Src${PORTVERSION}
diff -ruN --exclude CVS /usr/ports/biology/blat/distinfo blat/distinfo
--- /usr/ports/biology/blat/distinfo	2006-03-15 07:26:11.000000000 -0300
+++ blat/distinfo	2008-04-29 08:49:14.000000000 -0300
@@ -1,3 +1,3 @@
-MD5 (blatSrc33.zip) = 5f9d3a4a88e57dfc435b5dd465209918
-SHA256 (blatSrc33.zip) = 4ca932721f529d815e64b51940c94d8136faec52c6b8bf8c3fcd3706337d9a29
-SIZE (blatSrc33.zip) = 1308517
+MD5 (blatSrc34.zip) = c8637145ea70acf1ced1a670d37d7b98
+SHA256 (blatSrc34.zip) = b764828fdf8ef4c9994ae4b6148340a776493475edb573b6adf63ae7ca9b2629
+SIZE (blatSrc34.zip) = 2142975

--4SFOXa2GPu3tIq4H--

>Release-Note:
>Audit-Trail:
>Unformatted:
 --4SFOXa2GPu3tIq4H
 Content-Type: text/plain; charset=us-ascii
 Content-Disposition: inline
 
 



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