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Date:      Fri, 26 Jul 2019 03:05:16 GMT
From:      pkg-fallout@FreeBSD.org
To:        jwb@FreeBSD.org
Cc:        pkg-fallout@FreeBSD.org
Subject:   [package - head-i386-default][biology/pbcopper] Failed for pbcopper-0.4.1_1 in build
Message-ID:  <201907260305.x6Q35Gtt085481@beefy11.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     jwb@FreeBSD.org
Last committer: jbeich@FreeBSD.org
Ident:          $FreeBSD: head/biology/pbcopper/Makefile 498698 2019-04-12 06:36:31Z jbeich $
Log URL:        http://beefy11.nyi.freebsd.org/data/head-i386-default/p507306_s350311/logs/pbcopper-0.4.1_1.log
Build URL:      http://beefy11.nyi.freebsd.org/build.html?mastername=head-i386-default&build=p507306_s350311
Log:

=>> Building biology/pbcopper
build started at Fri Jul 26 03:03:18 UTC 2019
port directory: /usr/ports/biology/pbcopper
package name: pbcopper-0.4.1_1
building for: FreeBSD head-i386-default-job-02 13.0-CURRENT FreeBSD 13.0-CURRENT 1300037 i386
maintained by: jwb@FreeBSD.org
Makefile ident:      $FreeBSD: head/biology/pbcopper/Makefile 498698 2019-04-12 06:36:31Z jbeich $
Poudriere version: 3.2.8-5-gc81843e5
Host OSVERSION: 1300031
Jail OSVERSION: 1300037
Job Id: 02




!!! Jail is newer than host. (Jail: 1300037, Host: 1300031) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_p=i386
UNAME_m=i386
OSVERSION=1300037
UNAME_v=FreeBSD 13.0-CURRENT 1300037
UNAME_r=13.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-5-gc81843e5
MASTERMNT=/usr/local/poudriere/data/.m/head-i386-default/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/head-i386-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=head-i386-default
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/head-i386-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
jwb@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--
--prefix /usr/local  --mandir man  --infodir share/info --buildtype release  --strip  _build
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/pbcopper/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/pbcopper/work  HOME=/wrkdirs/usr/ports/biology/pbcopper/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/pbcopper/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/pbcopper/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/pbcopper/work  HOME=/wrkdirs/usr/ports/biology/pbcopper/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/pbcopper/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/pbcopper/work/stage LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe  -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing "  CPP="cpp" CPPFLAGS="-isystem /usr/local/include"  LDFLAGS=" -fstack-protector-strong " LIBS="-L/usr/local/lib"  CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -isystem /usr/local/include "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  
 BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/pbcopper"  EXAMPLESDIR="share/examples/pbcopper"  DATADIR="share/pbcopper"  WWWDIR="www/pbcopper"  ETCDIR="etc/pbcopper"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/pbcopper DOCSDIR=/usr/local/share/doc/pbcopper EXAMPLESDIR=/usr/local/share/examples/pbcopper  WWWDIR=/usr/local/www/pbcopper ETCDIR=/usr/local/etc/pbcopper
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=i386
MACHINE_ARCH=i386
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2

# stable/10 includes src.conf too late but make.conf is in sys.mk
.if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*}
# Disable build of llib now that head no longer has lint(1)
LINT=	true
.endif
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 366581) (based on LLVM 8.0.1) Target: i386-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 366581) (based on LLVM 8.0.1) Target: i386-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=yes
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 366581) (based on LLVM 8.0.1) Target: i386-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=i386
OPSYS=FreeBSD
_OSRELEASE=13.0-CURRENT
OSREL=13.0
OSVERSION=1300037
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=262144
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  524288
stack size              (kbytes, -s)  65536
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   pbcopper-0.4.1_1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.11.1.txz
[head-i386-default-job-02] Installing pkg-1.11.1...
[head-i386-default-job-02] Extracting pkg-1.11.1: .......... done
===>   pbcopper-0.4.1_1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of pbcopper-0.4.1_1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by pbcopper-0.4.1_1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by pbcopper-0.4.1_1 for building
=> SHA256 Checksum OK for PacificBiosciences-pbcopper-0.4.1_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by pbcopper-0.4.1_1 for building
===>  Extracting for pbcopper-0.4.1_1
=> SHA256 Checksum OK for PacificBiosciences-pbcopper-0.4.1_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for pbcopper-0.4.1_1
===>  Applying FreeBSD patches for pbcopper-0.4.1_1
===========================================================================
=======================<phase: build-depends  >============================
===>   pbcopper-0.4.1_1 depends on executable: meson - not found
===>   Installing existing package /packages/All/meson-0.51.0.txz
[head-i386-default-job-02] Installing meson-0.51.0...
[head-i386-default-job-02] `-- Installing ninja-1.9.0,2...
[head-i386-default-job-02] |   `-- Installing python36-3.6.9...
[head-i386-default-job-02] |   | `-- Installing gettext-runtime-0.20.1...
[head-i386-default-job-02] |   |   `-- Installing indexinfo-0.3.1...
[head-i386-default-job-02] |   |   `-- Extracting indexinfo-0.3.1: .... done
[head-i386-default-job-02] |   | `-- Extracting gettext-runtime-0.20.1: .......... done
[head-i386-default-job-02] |   | `-- Installing libffi-3.2.1_3...
[head-i386-default-job-02] |   | `-- Extracting libffi-3.2.1_3: .......... done
[head-i386-default-job-02] |   | `-- Installing readline-8.0.0...
[head-i386-default-job-02] |   | `-- Extracting readline-8.0.0: .......... done
[head-i386-default-job-02] |   `-- Extracting python36-3.6.9: .......... done
[head-i386-default-job-02] `-- Extracting ninja-1.9.0,2: ......... done
[head-i386-default-job-02] `-- Installing py36-setuptools-41.0.1...
[head-i386-default-job-02] `-- Extracting py36-setuptools-41.0.1: .......... done
[head-i386-default-job-02] Extracting meson-0.51.0: .......... done
Message from python36-3.6.9:

===========================================================================

Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

py36-gdbm       databases/py-gdbm@py36
py36-sqlite3    databases/py-sqlite3@py36
py36-tkinter    x11-toolkits/py-tkinter@py36

===========================================================================
===>   pbcopper-0.4.1_1 depends on executable: meson - found
===>   Returning to build of pbcopper-0.4.1_1
===>   pbcopper-0.4.1_1 depends on executable: ninja - found
===========================================================================
=======================<phase: lib-depends    >============================
===>   pbcopper-0.4.1_1 depends on shared library: libboost_regex.so - not found
===>   Installing existing package /packages/All/boost-libs-1.70.0_2.txz
[head-i386-default-job-02] Installing boost-libs-1.70.0_2...
[head-i386-default-job-02] `-- Installing icu-64.2,1...
[head-i386-default-job-02] `-- Extracting icu-64.2,1: .......... done
[head-i386-default-job-02] Extracting boost-libs-1.70.0_2: .......... done
Message from boost-libs-1.70.0_2:

You have built the Boost library with thread support.

Don't forget to add -pthread to your linker options when
linking your code.
===>   pbcopper-0.4.1_1 depends on shared library: libboost_regex.so - found (/usr/local/lib/libboost_regex.so)
===>   Returning to build of pbcopper-0.4.1_1
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for pbcopper-0.4.1_1
The Meson build system
Version: 0.51.0
Source dir: /wrkdirs/usr/ports/biology/pbcopper/work/pbcopper-0.4.1
Build dir: /wrkdirs/usr/ports/biology/pbcopper/work/pbcopper-0.4.1/_build
Build type: native build
Project name: pbcopper
Project version: 0.4.1
Appending CXXFLAGS from environment: '-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -isystem /usr/local/include '
Appending LDFLAGS from environment: ' -fstack-protector-strong '
Appending CPPFLAGS from environment: '-isystem /usr/local/include'
C++ compiler for the build machine: c++ (clang 8.0.1 "FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 366581) (based on LLVM 8.0.1)")
Appending CXXFLAGS from environment: '-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -isystem /usr/local/include '
Appending LDFLAGS from environment: ' -fstack-protector-strong '
Appending CPPFLAGS from environment: '-isystem /usr/local/include'
C++ compiler for the host machine: c++ (clang 8.0.1 "FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 366581) (based on LLVM 8.0.1)")
Build machine cpu family: x86
Build machine cpu: i386
Compiler for C++ supports arguments -Wduplicated-cond: NO 
Compiler for C++ supports arguments -Wduplicated-branches: NO 
Compiler for C++ supports arguments -Wlogical-op: NO 
Compiler for C++ supports arguments -Wrestrict: NO 
Compiler for C++ supports arguments -Wnull-dereference: YES 
Compiler for C++ supports arguments -Wuseless-cast: NO 
Compiler for C++ supports arguments -Wdouble-promotion: YES 
Compiler for C++ supports arguments -Wshadow: YES 
Compiler for C++ supports arguments -Wformat=1: NO 
Run-time dependency threads found: YES 
Run-time dependency Boost found: YES 1.70
Configuring PbcopperVersion.cpp using configuration
Build targets in project: 3
Found ninja-1.9.0 at /usr/local/bin/ninja
===========================================================================
=======================<phase: build          >============================
===>  Building for pbcopper-0.4.1_1
[1/22] /usr/local/bin/meson --internal vcstagger ../src/utility/PbcopperGitHash.cpp.in src/utility/PbcopperGitHash.cpp 0.4.1 /wrkdirs/usr/ports/biology/pbcopper/work/pbcopper-0.4.1/src/utility @COPPER_GIT_SHA1@ '(.*)' /wrkdirs/usr/ports/biology/pbcopper/work/pbcopper-0.4.1/src/utility/git describe --always '--dirty=*'
[2/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperGitHash.cpp.o' -MF 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperGitHash.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperGitHash.cpp.o' -c src/utility/PbcopperGitHash.cpp
[3/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/cli_CLI.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_CLI.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_CLI.cpp.o' -c ../src/cli/CLI.cpp
[4/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/cli_HelpPrinter.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_HelpPrinter.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_HelpPrinter.cpp.o' -c ../src/cli/HelpPrinter.cpp
[5/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/cli_Interface.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_Interface.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_Interface.cpp.o' -c ../src/cli/Interface.cpp
[6/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/cli_Option.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_Option.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_Option.cpp.o' -c ../src/cli/Option.cpp
[7/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/cli_Parser.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_Parser.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_Parser.cpp.o' -c ../src/cli/Parser.cpp
[8/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/cli_Results.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_Results.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_Results.cpp.o' -c ../src/cli/Results.cpp
[9/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/cli_VersionPrinter.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_VersionPrinter.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_VersionPrinter.cpp.o' -c ../src/cli/VersionPrinter.cpp
[10/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/cli_toolcontract_JsonPrinter.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_toolcontract_JsonPrinter.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_toolcontract_JsonPrinter.cpp.o' -c ../src/cli/toolcontract/JsonPrinter.cpp
[11/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/cli_toolcontract_ResolvedToolContract.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_toolcontract_ResolvedToolContract.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_toolcontract_ResolvedToolContract.cpp.o' -c ../src/cli/toolcontract/ResolvedToolContract.cpp
[12/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/data_Cigar.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_Cigar.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_Cigar.cpp.o' -c ../src/data/Cigar.cpp
[13/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/data_CigarOperation.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_CigarOperation.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_CigarOperation.cpp.o' -c ../src/data/CigarOperation.cpp
[14/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/data_MovieName.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_MovieName.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_MovieName.cpp.o' -c ../src/data/MovieName.cpp
[15/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/data_RSMovieName.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_RSMovieName.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_RSMovieName.cpp.o' -c ../src/data/RSMovieName.cpp
[16/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/logging_Logging.cpp.o' -MF 'src/25a6634@@pbcopper@sha/logging_Logging.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/logging_Logging.cpp.o' -c ../src/logging/Logging.cpp
[17/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/utility_CallbackTimer.cpp.o' -MF 'src/25a6634@@pbcopper@sha/utility_CallbackTimer.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/utility_CallbackTimer.cpp.o' -c ../src/utility/CallbackTimer.cpp
[18/22] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperVersion.cpp.o' -MF 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperVersion.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperVersion.cpp.o' -c src/utility/PbcopperVersion.cpp
[19/22] c++  -o src/libpbcopper.so.0.4.1 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperGitHash.cpp.o' 'src/25a6634@@pbcopper@sha/cli_CLI.cpp.o' 'src/25a6634@@pbcopper@sha/cli_HelpPrinter.cpp.o' 'src/25a6634@@pbcopper@sha/cli_Interface.cpp.o' 'src/25a6634@@pbcopper@sha/cli_Option.cpp.o' 'src/25a6634@@pbcopper@sha/cli_Parser.cpp.o' 'src/25a6634@@pbcopper@sha/cli_Results.cpp.o' 'src/25a6634@@pbcopper@sha/cli_VersionPrinter.cpp.o' 'src/25a6634@@pbcopper@sha/cli_toolcontract_JsonPrinter.cpp.o' 'src/25a6634@@pbcopper@sha/cli_toolcontract_ResolvedToolContract.cpp.o' 'src/25a6634@@pbcopper@sha/data_Cigar.cpp.o' 'src/25a6634@@pbcopper@sha/data_CigarOperation.cpp.o' 'src/25a6634@@pbcopper@sha/data_MovieName.cpp.o' 'src/25a6634@@pbcopper@sha/data_RSMovieName.cpp.o' 'src/25a6634@@pbcopper@sha/logging_Logging.cpp.o' 'src/25a6634@@pbcopper@sha/utility_CallbackTimer.cpp.o' 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperVersion.cpp.o' -Wl,--no-undefined -Wl,--as-needed
  -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,libpbcopper.so.0.4.1 -Wl,--end-group -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong -pthread
[20/22] /usr/local/bin/meson --internal symbolextractor src/libpbcopper.so.0.4.1 'src/25a6634@@pbcopper@sha/libpbcopper.so.0.4.1.symbols' 
[21/22] c++ -Iexamples/cli_demo/c7429bd@@cli_demo@exe -Iexamples/cli_demo -I../examples/cli_demo -Iinclude -I../include -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -pthread -MD -MQ 'examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o' -MF 'examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o.d' -o 'examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o' -c ../examples/cli_demo/main.cpp
FAILED: examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o 
c++ -Iexamples/cli_demo/c7429bd@@cli_demo@exe -Iexamples/cli_demo -I../examples/cli_demo -Iinclude -I../include -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -pthread -MD -MQ 'examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o' -MF 'examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o.d' -o 'examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o' -c ../examples/cli_demo/main.cpp
In file included from ../examples/cli_demo/main.cpp:2:
In file included from ../include/pbcopper/cli/CLI.h:12:
In file included from ../include/pbcopper/cli/Interface.h:11:
In file included from ../include/pbcopper/cli/Option.h:14:
In file included from ../include/pbcopper/json/JSON.h:7:
./include/pbcopper/json/internal/json.hpp:1229:9: error: static_assert failed due to requirement 'sizeof(nlohmann::basic_json<std::map, std::vector, std::__1::basic_string<char>, bool, long long, unsigned long long, double, std::allocator, adl_serializer>) == 0' "could not find from_json() method in T's namespace"
        static_assert(sizeof(BasicJsonType) == 0,
        ^             ~~~~~~~~~~~~~~~~~~~~~~~~~~
./include/pbcopper/json/internal/json.hpp:1244:16: note: in instantiation of function template specialization 'nlohmann::detail::from_json_fn::call<nlohmann::basic_json<std::map, std::vector, std::__1::basic_string<char>, bool, long long, unsigned long long, double, std::allocator, adl_serializer>, std::__1::basic_string_view<char, std::__1::char_traits<char> > >' requested here
        return call(j, val, priority_tag<1> {});
               ^
./include/pbcopper/json/internal/json.hpp:10801:9: note: in instantiation of function template specialization 'nlohmann::detail::from_json_fn::operator()<nlohmann::basic_json<std::map, std::vector, std::__1::basic_string<char>, bool, long long, unsigned long long, double, std::allocator, adl_serializer>, std::__1::basic_string_view<char, std::__1::char_traits<char> > >' requested here
        ::nlohmann::from_json(std::forward<BasicJsonType>(j), val);
        ^
./include/pbcopper/json/internal/json.hpp:13329:36: note: in instantiation of function template specialization 'nlohmann::adl_serializer<std::__1::basic_string_view<char, std::__1::char_traits<char> >, void>::from_json<const nlohmann::basic_json<std::map, std::vector, std::__1::basic_string<char>, bool, long long, unsigned long long, double, std::allocator, adl_serializer> &, std::__1::basic_string_view<char, std::__1::char_traits<char> > >' requested here
        JSONSerializer<ValueType>::from_json(*this, ret);
                                   ^
./include/pbcopper/json/internal/json.hpp:13591:16: note: in instantiation of function template specialization 'nlohmann::basic_json<std::map, std::vector, std::__1::basic_string<char>, bool, long long, unsigned long long, double, std::allocator, adl_serializer>::get<std::__1::basic_string_view<char, std::__1::char_traits<char> >, std::__1::basic_string_view<char, std::__1::char_traits<char> >, 0>' requested here
        return get<ValueType>();
               ^
/usr/include/c++/v1/string:888:29: note: in instantiation of function template specialization 'nlohmann::basic_json<std::map, std::vector, std::__1::basic_string<char>, bool, long long, unsigned long long, double, std::allocator, adl_serializer>::operator basic_string_view<std::__1::basic_string_view<char, std::__1::char_traits<char> >, 0>' requested here
        {__self_view __sv = __t; return assign(__sv);}
                            ^
./examples/cli_demo/main.cpp:82:15: note: in instantiation of function template specialization 'std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::operator=<nlohmann::basic_json<std::map, std::vector, std::__1::basic_string<char>, bool, long long, unsigned long long, double, std::allocator, adl_serializer>, void>' requested here
    s.tempDir = args["temp_dir"];
              ^
1 error generated.
ninja: build stopped: subcommand failed.
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/pbcopper



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