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Date:      Tue, 15 Sep 2015 14:00:41 +0930
From:      Wayne Sierke <ws@au.dyndns.ws>
To:        freebsd-ports@freebsd.org
Subject:   Odd pkg upgrade behaviour with gdk-pixbuf2
Message-ID:  <1442291441.1517.56.camel@au.dyndns.ws>

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Upon attempting to pkg upgrade chromium I saw that it wanted to install
the deprecated ghostscript9-nox11  (ref: ports/UPDATING 20150822). 
Investigation showed that the ghostscript "dependency" was stemming
from upgrading of gdk-pixbuf2.

I then proceeded to allow pkg upgrade to follow its own trajectory,
with multiple (failed) attempts to upgrade the chromium/gdk-pixbuf2
ports; on each iteration it worked its way through various ghostscript
packages until it (the "phantom" ghostscript dependency) was finally
resolved out:


# pkg upgrade chromium
Updating FreeBSD repository catalogue...
FreeBSD repository is up-to-date.
All repositories are up-to-date.
The following 3 package(s) will be affected (of 0 checked):

New packages to be INSTALLED:
	ghostscript9-nox11: 9.06_11

Installed packages to be UPGRADED:
	chromium: 44.0.2403.155 -> 45.0.2454.85
	gdk-pixbuf2: 2.31.6 -> 2.31.7

The process will require 41 MiB more space.
48 MiB to be downloaded.

Proceed with this action? [y/N]: y
Fetching chromium-45.0.2454.85.txz: 100%   37 MiB 363.6kB/s    01:47   
Fetching gdk-pixbuf2-2.31.7.txz: 100%  483 KiB 495.0kB/s    00:01    
Fetching ghostscript9-nox11-9.06_11.txz: 100%   11 MiB 364.2kB/s   
 00:31    
Checking integrity... done (1 conflicting)
Checking integrity... done (0 conflicting)
Conflicts with the existing packages have been found.
One more solver iteration is needed to resolve them.
The following 3 package(s) will be affected (of 0 checked):

New packages to be INSTALLED:
	ghostscript9-agpl-nox11: 9.15_2

Installed packages to be UPGRADED:
	gdk-pixbuf2: 2.31.6 -> 2.31.7
	chromium: 44.0.2403.155 -> 45.0.2454.85

The process will require 48 MiB more space.
11 MiB to be downloaded.

Proceed with this action? [y/N]: y
Fetching ghostscript9-agpl-nox11-9.15_2.txz: 100%   11 MiB 366.0kB/s   
 00:32    
[1/3] Upgrading gdk-pixbuf2 from 2.31.6 to 2.31.7...
[1/3] Extracting gdk-pixbuf2-2.31.7: 100%
[2/3] Upgrading chromium from 44.0.2403.155 to 45.0.2454.85...
[2/3] Extracting chromium-45.0.2454.85: 100%
[3/3] Installing ghostscript9-agpl-nox11-9.15_2...
pkg: ghostscript9-agpl-nox11-9.15_2 conflicts with ghostscript9-base
-9.06_11 (installs files into the same place).  Problematic file:
/usr/local/bin/dvipdf


# pkg upgrade gdk-pixbuf2
Updating FreeBSD repository catalogue...
FreeBSD repository is up-to-date.
All repositories are up-to-date.
Checking integrity... done (1 conflicting)
Checking integrity... done (0 conflicting)
The following 2 package(s) will be affected (of 0 checked):

New packages to be INSTALLED:
	ghostscript9-agpl: 9.15_2

Installed packages to be UPGRADED:
	gdk-pixbuf2: 2.31.6 -> 2.31.7

The process will require 46 MiB more space.
11 MiB to be downloaded.

Proceed with this action? [y/N]: y
Fetching ghostscript9-agpl-9.15_2.txz: 100%   11 MiB 356.3kB/s    00:33
    
[1/2] Upgrading gdk-pixbuf2 from 2.31.6 to 2.31.7...
pkg: unlinkat(usr/local/lib/libgdk_pixbuf-2.0.so.0.3100.6): No such
file or directory
pkg: unlinkat(usr/local/lib/libgdk_pixbuf_xlib-2.0.so.0.3100.6): No
such file or directory
pkg: unlinkat(usr/local/share/licenses/gdk-pixbuf2-2.31.6/LGPL20): No
such file or directory
pkg: unlinkat(usr/local/share/licenses/gdk-pixbuf2-2.31.6/LICENSE): No
such file or directory
pkg: unlinkat(usr/local/share/licenses/gdk-pixbuf2-2.31.6/catalog.mk):
No such file or directory
[1/2] Extracting gdk-pixbuf2-2.31.7: 100%
[2/2] Installing ghostscript9-agpl-9.15_2...
pkg: ghostscript9-agpl-9.15_2 conflicts with ghostscript9-base-9.06_11
(installs files into the same place).  Problematic file:
/usr/local/bin/dvipdf


# pkg upgrade gdk-pixbuf2
Updating FreeBSD repository catalogue...
Fetching meta.txz: 100%    944 B   0.9kB/s    00:01    
Fetching packagesite.txz: 100%    5 MiB 337.1kB/s    00:16    
Processing entries: 100%
FreeBSD repository update completed. 24278 packages processed.
Checking integrity... done (1 conflicting)
Checking integrity... done (0 conflicting)
The following 2 package(s) will be affected (of 0 checked):

New packages to be INSTALLED:
	ghostscript9: 9.06_11

Installed packages to be UPGRADED:
	gdk-pixbuf2: 2.31.6 -> 2.31.7

The process will require 39 MiB more space.
11 MiB to be downloaded.

Proceed with this action? [y/N]: y
Fetching ghostscript9-9.06_11.txz: 100%   11 MiB 365.2kB/s    00:31    
[1/2] Upgrading gdk-pixbuf2 from 2.31.6 to 2.31.7...
pkg: unlinkat(usr/local/lib/libgdk_pixbuf-2.0.so.0.3100.6): No such
file or directory
pkg: unlinkat(usr/local/lib/libgdk_pixbuf_xlib-2.0.so.0.3100.6): No
such file or directory
pkg: unlinkat(usr/local/share/licenses/gdk-pixbuf2-2.31.6/LGPL20): No
such file or directory
pkg: unlinkat(usr/local/share/licenses/gdk-pixbuf2-2.31.6/LICENSE): No
such file or directory
pkg: unlinkat(usr/local/share/licenses/gdk-pixbuf2-2.31.6/catalog.mk):
No such file or directory
[1/2] Extracting gdk-pixbuf2-2.31.7: 100%
[2/2] Installing ghostscript9-9.06_11...
pkg: ghostscript9-9.06_11 conflicts with ghostscript9-base-9.06_11
(installs files into the same place).  Problematic file:
/usr/local/bin/dvipdf


# pkg upgrade gdk-pixbuf2
Updating FreeBSD repository catalogue...
FreeBSD repository is up-to-date.
All repositories are up-to-date.
Checking integrity... done (1 conflicting)
Checking integrity... done (3 conflicting)
Checking integrity... done (3 conflicting)
Checking integrity... done (4 conflicting)
Checking integrity... done (0 conflicting)
The following 7 package(s) will be affected (of 0 checked):

Installed packages to be REMOVED:
	libspectre-0.2.7
	evince-3.16.1_1
	gnome3-lite-3.16.2
	mate-1.10.0
	atril-1.10.1_4
	sushi-3.16.0_1

Installed packages to be UPGRADED:
	gdk-pixbuf2: 2.31.6 -> 2.31.7

The operation will free 23 MiB.

Proceed with this action? [y/N]:


Should I suspect the integrity of my pkg database etc? Is there
anything I can do to repair or resolve this?


Thanks.




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