Date: Sun, 21 Oct 2007 02:24:40 GMT From: Motomichi Matsuzaki <mzaki@e-mail.ne.jp> To: freebsd-gnats-submit@FreeBSD.org Subject: ports/117369: Update port: biology/ruby-bio to 1.1.0 Message-ID: <200710210224.l9L2Oekb082927@www.freebsd.org> Resent-Message-ID: <200710210230.l9L2U12X071661@freefall.freebsd.org>
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>Number: 117369 >Category: ports >Synopsis: Update port: biology/ruby-bio to 1.1.0 >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Sun Oct 21 02:30:01 UTC 2007 >Closed-Date: >Last-Modified: >Originator: Motomichi Matsuzaki >Release: >Organization: >Environment: >Description: I'm sending a patch of FreeBSD ports, biology/ruby-bio, updating to 1.1.0 from 1.0.0. It works fine for me, although I have tested only for very fundamental functions. Please update the FreeBSD ports repository. >How-To-Repeat: >Fix: Patch attached with submission follows: diff -ruN ruby-bio.bak/Makefile ruby-bio/Makefile --- ruby-bio.bak/Makefile Wed Apr 26 07:09:29 2006 +++ ruby-bio/Makefile Fri Oct 19 20:47:24 2007 @@ -6,7 +6,7 @@ # PORTNAME= bio -PORTVERSION= 1.0.0 +PORTVERSION= 1.1.0 CATEGORIES= biology ruby MASTER_SITES= http://bioruby.org/archive/ PKGNAMEPREFIX= ${RUBY_PKGNAMEPREFIX} diff -ruN ruby-bio.bak/distinfo ruby-bio/distinfo --- ruby-bio.bak/distinfo Wed Apr 26 07:09:29 2006 +++ ruby-bio/distinfo Fri Oct 19 20:48:07 2007 @@ -1,3 +1,3 @@ -MD5 (ruby/bioruby-1.0.0.tar.gz) = 5106b71b9b53bce7c3b93df911d2411d -SHA256 (ruby/bioruby-1.0.0.tar.gz) = 7d4255e0a032ef21acea32eb1b3051843b3363008f7a36d7515430e2823b1be3 -SIZE (ruby/bioruby-1.0.0.tar.gz) = 573771 +MD5 (ruby/bioruby-1.1.0.tar.gz) = d4742051875d3a67623de5f87de65a12 +SHA256 (ruby/bioruby-1.1.0.tar.gz) = d07a903ac633e381b356dd6429d81d318e3da86bc63b12479b57ec7ead1b22f9 +SIZE (ruby/bioruby-1.1.0.tar.gz) = 807130 diff -ruN ruby-bio.bak/pkg-plist ruby-bio/pkg-plist --- ruby-bio.bak/pkg-plist Wed Apr 26 07:09:29 2006 +++ ruby-bio/pkg-plist Fri Oct 19 21:49:22 2007 @@ -13,18 +13,24 @@ %%RUBY_SITELIBDIR%%/bio/db.rb %%RUBY_SITELIBDIR%%/bio/feature.rb %%RUBY_SITELIBDIR%%/bio/location.rb +%%RUBY_SITELIBDIR%%/bio/map.rb %%RUBY_SITELIBDIR%%/bio/pathway.rb %%RUBY_SITELIBDIR%%/bio/reference.rb %%RUBY_SITELIBDIR%%/bio/sequence.rb %%RUBY_SITELIBDIR%%/bio/shell.rb +%%RUBY_SITELIBDIR%%/bio/tree.rb %%RUBY_SITELIBDIR%%/bio/appl/blast.rb %%RUBY_SITELIBDIR%%/bio/appl/clustalw.rb %%RUBY_SITELIBDIR%%/bio/appl/emboss.rb %%RUBY_SITELIBDIR%%/bio/appl/fasta.rb %%RUBY_SITELIBDIR%%/bio/appl/hmmer.rb %%RUBY_SITELIBDIR%%/bio/appl/mafft.rb +%%RUBY_SITELIBDIR%%/bio/appl/muscle.rb +%%RUBY_SITELIBDIR%%/bio/appl/probcons.rb %%RUBY_SITELIBDIR%%/bio/appl/psort.rb +%%RUBY_SITELIBDIR%%/bio/appl/pts1.rb %%RUBY_SITELIBDIR%%/bio/appl/sim4.rb +%%RUBY_SITELIBDIR%%/bio/appl/tcoffee.rb %%RUBY_SITELIBDIR%%/bio/appl/bl2seq/report.rb %%RUBY_SITELIBDIR%%/bio/appl/blast/format0.rb %%RUBY_SITELIBDIR%%/bio/appl/blast/format8.rb @@ -35,10 +41,14 @@ %%RUBY_SITELIBDIR%%/bio/appl/blat/report.rb %%RUBY_SITELIBDIR%%/bio/appl/clustalw/report.rb %%RUBY_SITELIBDIR%%/bio/appl/fasta/format10.rb -%%RUBY_SITELIBDIR%%/bio/appl/fasta/format6.rb +%%RUBY_SITELIBDIR%%/bio/appl/gcg/msf.rb +%%RUBY_SITELIBDIR%%/bio/appl/gcg/seq.rb %%RUBY_SITELIBDIR%%/bio/appl/genscan/report.rb %%RUBY_SITELIBDIR%%/bio/appl/hmmer/report.rb +%%RUBY_SITELIBDIR%%/bio/appl/iprscan/report.rb %%RUBY_SITELIBDIR%%/bio/appl/mafft/report.rb +%%RUBY_SITELIBDIR%%/bio/appl/phylip/alignment.rb +%%RUBY_SITELIBDIR%%/bio/appl/phylip/distance_matrix.rb %%RUBY_SITELIBDIR%%/bio/appl/psort/report.rb %%RUBY_SITELIBDIR%%/bio/appl/sim4/report.rb %%RUBY_SITELIBDIR%%/bio/appl/sosui/report.rb @@ -53,12 +63,16 @@ %%RUBY_SITELIBDIR%%/bio/db/fasta.rb %%RUBY_SITELIBDIR%%/bio/db/gff.rb %%RUBY_SITELIBDIR%%/bio/db/go.rb +%%RUBY_SITELIBDIR%%/bio/db/lasergene.rb %%RUBY_SITELIBDIR%%/bio/db/litdb.rb %%RUBY_SITELIBDIR%%/bio/db/medline.rb %%RUBY_SITELIBDIR%%/bio/db/nbrf.rb +%%RUBY_SITELIBDIR%%/bio/db/newick.rb +%%RUBY_SITELIBDIR%%/bio/db/nexus.rb %%RUBY_SITELIBDIR%%/bio/db/pdb.rb %%RUBY_SITELIBDIR%%/bio/db/prosite.rb %%RUBY_SITELIBDIR%%/bio/db/rebase.rb +%%RUBY_SITELIBDIR%%/bio/db/soft.rb %%RUBY_SITELIBDIR%%/bio/db/transfac.rb %%RUBY_SITELIBDIR%%/bio/db/embl/common.rb %%RUBY_SITELIBDIR%%/bio/db/embl/embl.rb @@ -72,8 +86,8 @@ %%RUBY_SITELIBDIR%%/bio/db/genbank/genpept.rb %%RUBY_SITELIBDIR%%/bio/db/genbank/refseq.rb %%RUBY_SITELIBDIR%%/bio/db/kegg/brite.rb -%%RUBY_SITELIBDIR%%/bio/db/kegg/cell.rb %%RUBY_SITELIBDIR%%/bio/db/kegg/compound.rb +%%RUBY_SITELIBDIR%%/bio/db/kegg/drug.rb %%RUBY_SITELIBDIR%%/bio/db/kegg/enzyme.rb %%RUBY_SITELIBDIR%%/bio/db/kegg/expression.rb %%RUBY_SITELIBDIR%%/bio/db/kegg/genes.rb @@ -81,8 +95,9 @@ %%RUBY_SITELIBDIR%%/bio/db/kegg/glycan.rb %%RUBY_SITELIBDIR%%/bio/db/kegg/keggtab.rb %%RUBY_SITELIBDIR%%/bio/db/kegg/kgml.rb -%%RUBY_SITELIBDIR%%/bio/db/kegg/ko.rb +%%RUBY_SITELIBDIR%%/bio/db/kegg/orthology.rb %%RUBY_SITELIBDIR%%/bio/db/kegg/reaction.rb +%%RUBY_SITELIBDIR%%/bio/db/kegg/taxonomy.rb %%RUBY_SITELIBDIR%%/bio/db/pdb/atom.rb %%RUBY_SITELIBDIR%%/bio/db/pdb/chain.rb %%RUBY_SITELIBDIR%%/bio/db/pdb/chemicalcomponent.rb @@ -93,11 +108,14 @@ %%RUBY_SITELIBDIR%%/bio/io/das.rb %%RUBY_SITELIBDIR%%/bio/io/dbget.rb %%RUBY_SITELIBDIR%%/bio/io/ddbjxml.rb +%%RUBY_SITELIBDIR%%/bio/io/ebisoap.rb +%%RUBY_SITELIBDIR%%/bio/io/ensembl.rb %%RUBY_SITELIBDIR%%/bio/io/fastacmd.rb %%RUBY_SITELIBDIR%%/bio/io/fetch.rb %%RUBY_SITELIBDIR%%/bio/io/flatfile.rb %%RUBY_SITELIBDIR%%/bio/io/higet.rb %%RUBY_SITELIBDIR%%/bio/io/keggapi.rb +%%RUBY_SITELIBDIR%%/bio/io/ncbisoap.rb %%RUBY_SITELIBDIR%%/bio/io/pubmed.rb %%RUBY_SITELIBDIR%%/bio/io/registry.rb %%RUBY_SITELIBDIR%%/bio/io/soapwsdl.rb @@ -114,62 +132,40 @@ %%RUBY_SITELIBDIR%%/bio/shell/core.rb %%RUBY_SITELIBDIR%%/bio/shell/demo.rb %%RUBY_SITELIBDIR%%/bio/shell/interface.rb +%%RUBY_SITELIBDIR%%/bio/shell/irb.rb %%RUBY_SITELIBDIR%%/bio/shell/object.rb +%%RUBY_SITELIBDIR%%/bio/shell/script.rb +%%RUBY_SITELIBDIR%%/bio/shell/setup.rb %%RUBY_SITELIBDIR%%/bio/shell/web.rb +%%RUBY_SITELIBDIR%%/bio/shell/plugin/blast.rb %%RUBY_SITELIBDIR%%/bio/shell/plugin/codon.rb +%%RUBY_SITELIBDIR%%/bio/shell/plugin/das.rb %%RUBY_SITELIBDIR%%/bio/shell/plugin/emboss.rb %%RUBY_SITELIBDIR%%/bio/shell/plugin/entry.rb %%RUBY_SITELIBDIR%%/bio/shell/plugin/flatfile.rb %%RUBY_SITELIBDIR%%/bio/shell/plugin/keggapi.rb %%RUBY_SITELIBDIR%%/bio/shell/plugin/midi.rb %%RUBY_SITELIBDIR%%/bio/shell/plugin/obda.rb +%%RUBY_SITELIBDIR%%/bio/shell/plugin/psort.rb %%RUBY_SITELIBDIR%%/bio/shell/plugin/seq.rb -%%RUBY_SITELIBDIR%%/bio/shell/rails/Rakefile -%%RUBY_SITELIBDIR%%/bio/shell/rails/app/controllers/application.rb -%%RUBY_SITELIBDIR%%/bio/shell/rails/app/controllers/shell_controller.rb -%%RUBY_SITELIBDIR%%/bio/shell/rails/app/helpers/application_helper.rb -%%RUBY_SITELIBDIR%%/bio/shell/rails/app/models/shell_connection.rb -%%RUBY_SITELIBDIR%%/bio/shell/rails/app/views/layouts/shell.rhtml -%%RUBY_SITELIBDIR%%/bio/shell/rails/app/views/shell/history.rhtml -%%RUBY_SITELIBDIR%%/bio/shell/rails/app/views/shell/index.rhtml -%%RUBY_SITELIBDIR%%/bio/shell/rails/app/views/shell/show.rhtml -%%RUBY_SITELIBDIR%%/bio/shell/rails/config/boot.rb -%%RUBY_SITELIBDIR%%/bio/shell/rails/config/database.yml -%%RUBY_SITELIBDIR%%/bio/shell/rails/config/environment.rb -%%RUBY_SITELIBDIR%%/bio/shell/rails/config/routes.rb -%%RUBY_SITELIBDIR%%/bio/shell/rails/config/environments/development.rb -%%RUBY_SITELIBDIR%%/bio/shell/rails/config/environments/production.rb -%%RUBY_SITELIBDIR%%/bio/shell/rails/config/environments/test.rb -%%RUBY_SITELIBDIR%%/bio/shell/rails/doc/README_FOR_APP -%%RUBY_SITELIBDIR%%/bio/shell/rails/public/404.html -%%RUBY_SITELIBDIR%%/bio/shell/rails/public/500.html -%%RUBY_SITELIBDIR%%/bio/shell/rails/public/dispatch.cgi -%%RUBY_SITELIBDIR%%/bio/shell/rails/public/dispatch.fcgi -%%RUBY_SITELIBDIR%%/bio/shell/rails/public/dispatch.rb -%%RUBY_SITELIBDIR%%/bio/shell/rails/public/favicon.ico -%%RUBY_SITELIBDIR%%/bio/shell/rails/public/index.html -%%RUBY_SITELIBDIR%%/bio/shell/rails/public/robots.txt -%%RUBY_SITELIBDIR%%/bio/shell/rails/public/images/icon.png -%%RUBY_SITELIBDIR%%/bio/shell/rails/public/images/rails.png -%%RUBY_SITELIBDIR%%/bio/shell/rails/public/javascripts/controls.js -%%RUBY_SITELIBDIR%%/bio/shell/rails/public/javascripts/dragdrop.js -%%RUBY_SITELIBDIR%%/bio/shell/rails/public/javascripts/effects.js -%%RUBY_SITELIBDIR%%/bio/shell/rails/public/javascripts/prototype.js -%%RUBY_SITELIBDIR%%/bio/shell/rails/public/stylesheets/main.css -%%RUBY_SITELIBDIR%%/bio/shell/rails/script/about -%%RUBY_SITELIBDIR%%/bio/shell/rails/script/breakpointer -%%RUBY_SITELIBDIR%%/bio/shell/rails/script/console -%%RUBY_SITELIBDIR%%/bio/shell/rails/script/destroy -%%RUBY_SITELIBDIR%%/bio/shell/rails/script/generate -%%RUBY_SITELIBDIR%%/bio/shell/rails/script/plugin -%%RUBY_SITELIBDIR%%/bio/shell/rails/script/runner -%%RUBY_SITELIBDIR%%/bio/shell/rails/script/server -%%RUBY_SITELIBDIR%%/bio/shell/rails/script/performance/benchmarker -%%RUBY_SITELIBDIR%%/bio/shell/rails/script/performance/profiler -%%RUBY_SITELIBDIR%%/bio/shell/rails/script/process/reaper -%%RUBY_SITELIBDIR%%/bio/shell/rails/script/process/spawner -%%RUBY_SITELIBDIR%%/bio/shell/rails/script/process/spinner -%%RUBY_SITELIBDIR%%/bio/shell/rails/test/test_helper.rb +%%RUBY_SITELIBDIR%%/bio/shell/plugin/soap.rb +%%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/generators/bioruby/bioruby_generator.rb +%%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/generators/bioruby/templates/_classes.rhtml +%%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/generators/bioruby/templates/_log.rhtml +%%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/generators/bioruby/templates/_methods.rhtml +%%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/generators/bioruby/templates/_modules.rhtml +%%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/generators/bioruby/templates/_variables.rhtml +%%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby-bg.gif +%%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby-console.png +%%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby-gem.png +%%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby-link.gif +%%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby.css +%%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby.rhtml +%%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby_controller.rb +%%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby_helper.rb +%%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/generators/bioruby/templates/commands.rhtml +%%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/generators/bioruby/templates/history.rhtml +%%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/generators/bioruby/templates/index.rhtml %%RUBY_SITELIBDIR%%/bio/util/color_scheme.rb %%RUBY_SITELIBDIR%%/bio/util/contingency_table.rb %%RUBY_SITELIBDIR%%/bio/util/sirna.rb @@ -181,26 +177,41 @@ %%RUBY_SITELIBDIR%%/bio/util/color_scheme/taylor.rb %%RUBY_SITELIBDIR%%/bio/util/color_scheme/turn.rb %%RUBY_SITELIBDIR%%/bio/util/color_scheme/zappo.rb +%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme.rb +%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/analysis.rb +%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/analysis_basic.rb +%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/cut_symbol.rb +%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/double_stranded/aligned_strands.rb +%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/double_stranded/cut_location_pair.rb +%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/double_stranded/cut_location_pair_in_enzyme_notation.rb +%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/double_stranded/cut_locations.rb +%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/double_stranded/cut_locations_in_enzyme_notation.rb +%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/double_stranded.rb +%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/enzymes.yaml +%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/range/cut_range.rb +%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/range/cut_ranges.rb +%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/range/horizontal_cut_range.rb +%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/range/sequence_range/calculated_cuts.rb +%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/range/sequence_range/fragment.rb +%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/range/sequence_range/fragments.rb +%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/range/sequence_range.rb +%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/range/vertical_cut_range.rb +%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/single_strand/cut_locations_in_enzyme_notation.rb +%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/single_strand.rb +%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/single_strand_complement.rb +%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/string_formatting.rb +@dirrm %%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/single_strand +@dirrm %%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/range/sequence_range +@dirrm %%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/range +@dirrm %%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/double_stranded +@dirrm %%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme @dirrm %%RUBY_SITELIBDIR%%/bio/util/color_scheme @dirrm %%RUBY_SITELIBDIR%%/bio/util -@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/test -@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/script/process -@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/script/performance -@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/script -@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/public/stylesheets -@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/public/javascripts -@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/public/images -@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/public -@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/doc -@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/config/environments -@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/config -@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/app/views/shell -@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/app/views/layouts -@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/app/views -@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/app/models -@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/app/helpers -@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/app/controllers -@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/app +@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/generators/bioruby/templates +@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/generators/bioruby +@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/generators +@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins +@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/vendor @dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails @dirrm %%RUBY_SITELIBDIR%%/bio/shell/plugin @dirrm %%RUBY_SITELIBDIR%%/bio/shell @@ -219,9 +230,12 @@ @dirrm %%RUBY_SITELIBDIR%%/bio/appl/sosui @dirrm %%RUBY_SITELIBDIR%%/bio/appl/sim4 @dirrm %%RUBY_SITELIBDIR%%/bio/appl/psort +@dirrm %%RUBY_SITELIBDIR%%/bio/appl/phylip @dirrm %%RUBY_SITELIBDIR%%/bio/appl/mafft +@dirrm %%RUBY_SITELIBDIR%%/bio/appl/iprscan @dirrm %%RUBY_SITELIBDIR%%/bio/appl/hmmer @dirrm %%RUBY_SITELIBDIR%%/bio/appl/genscan +@dirrm %%RUBY_SITELIBDIR%%/bio/appl/gcg @dirrm %%RUBY_SITELIBDIR%%/bio/appl/fasta @dirrm %%RUBY_SITELIBDIR%%/bio/appl/clustalw @dirrm %%RUBY_SITELIBDIR%%/bio/appl/blat @@ -233,6 +247,7 @@ %%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/biofetch.rb %%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/color_scheme_na.rb %%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/dbget +%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/enzymes.rb %%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/fasta2tab.rb %%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/fsplit.rb %%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/gb2fasta.rb @@ -258,10 +273,7 @@ %%PORTDOCS%%%%RUBY_MODDOCDIR%%/KEGG_API.rd %%PORTDOCS%%%%RUBY_MODDOCDIR%%/Tutorial.rd %%PORTDOCS%%%%RUBY_MODDOCDIR%%/Changes-0.7.rd -%%PORTDOCS%%%%RUBY_MODDOCDIR%%/ja/BioRuby.rd.ja -%%PORTDOCS%%%%RUBY_MODDOCDIR%%/ja/Design.rd.ja %%PORTDOCS%%%%RUBY_MODDOCDIR%%/ja/KEGG_API.rd.ja -%%PORTDOCS%%%%RUBY_MODDOCDIR%%/ja/TODO.rd.ja %%PORTDOCS%%%%RUBY_MODDOCDIR%%/ja/Tutorial.rd.ja %%PORTDOCS%%@dirrm %%RUBY_MODDOCDIR%%/ja %%PORTDOCS%%@dirrm %%RUBY_MODDOCDIR%% >Release-Note: >Audit-Trail: >Unformatted:
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