Date: Sun, 16 Jan 2011 08:30:30 GMT From: Wen Heping <wen@FreeBSD.org> To: freebsd-gnats-submit@FreeBSD.org Subject: ports/154053: [Update]math/jags:update to 2.2.0 Message-ID: <201101160830.p0G8UUge079916@red.freebsd.org> Resent-Message-ID: <201101160840.p0G8e74K012478@freefall.freebsd.org>
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>Number: 154053 >Category: ports >Synopsis: [Update]math/jags:update to 2.2.0 >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: update >Submitter-Id: current-users >Arrival-Date: Sun Jan 16 08:40:07 UTC 2011 >Closed-Date: >Last-Modified: >Originator: Wen Heping >Release: FreeBSD 9.0 >Organization: FreeBSD >Environment: >Description: Update to 2.2.0 >How-To-Repeat: >Fix: Patch attached with submission follows: diff -urN jags.orig/Makefile jags/Makefile --- jags.orig/Makefile 2011-01-16 15:44:30.000000000 +0800 +++ jags/Makefile 2011-01-16 16:01:51.000000000 +0800 @@ -7,12 +7,12 @@ # PORTNAME= mcmc-jags -PORTVERSION= 2.1.0 +PORTVERSION= 2.2.0 CATEGORIES= math MASTER_SITES= SF:1,2,3 MASTER_SITE_SUBDIR= ${PORTNAME}/JAGS/2.x/Source/:1 \ - ${PORTNAME}/Examples/2.0/:2 \ - ${PORTNAME}/Manuals/2.0/:3 + ${PORTNAME}/Examples/2.x/:2 \ + ${PORTNAME}/Manuals/2.x/:3 DISTFILES= ${DISTNAME:S/mcmc-//:U}${EXTRACT_SUFX}:1 .if !defined(NOPORTDOCS) DISTFILES+= classic-bugs.tar.gz:2 jags_developer_manual.pdf:3 \ @@ -37,6 +37,8 @@ USE_BISON= build PLIST_SUB= PORTVERSION=${PORTVERSION} +MAN1= jags.1 + .include <bsd.port.options.mk> .if defined(WITH_ATLAS) diff -urN jags.orig/distinfo jags/distinfo --- jags.orig/distinfo 2011-01-16 15:44:30.000000000 +0800 +++ jags/distinfo 2011-01-16 15:46:26.000000000 +0800 @@ -1,15 +1,10 @@ -MD5 (mcmc-jags/JAGS-2.1.0.tar.gz) = ddb5eb745cb48537517aba186d7030c8 -SHA256 (mcmc-jags/JAGS-2.1.0.tar.gz) = c713a7f1856f2153a94e96bdf26d1e2dff4e3dc9156864d6798d6b3b157d6e68 -SIZE (mcmc-jags/JAGS-2.1.0.tar.gz) = 1171371 -MD5 (mcmc-jags/classic-bugs.tar.gz) = 98d32deaaf134ade265c0a6146291796 -SHA256 (mcmc-jags/classic-bugs.tar.gz) = 3e4902c08c7823a948fba4d7dc32f5140e56c59f170b12e63ac7f4ffc4a7f8cc -SIZE (mcmc-jags/classic-bugs.tar.gz) = 81313 -MD5 (mcmc-jags/jags_developer_manual.pdf) = 850864bef54ff17858f8bf341b0c13c1 -SHA256 (mcmc-jags/jags_developer_manual.pdf) = 09d06b202adcbc9a52bd889c19c741ffb13f68b6657b9a0a999ad3f89259eb19 -SIZE (mcmc-jags/jags_developer_manual.pdf) = 71199 -MD5 (mcmc-jags/jags_installation_manual.pdf) = 42a78397a85100d2cfbde4c92aad3b9f -SHA256 (mcmc-jags/jags_installation_manual.pdf) = d7147c7a57a1e55305c48bcbefbffd19090e958cc55339160c46401fa1d5955a -SIZE (mcmc-jags/jags_installation_manual.pdf) = 119855 -MD5 (mcmc-jags/jags_user_manual.pdf) = efe47f0332544809627f57c209ca2068 -SHA256 (mcmc-jags/jags_user_manual.pdf) = 39f642e407a03c2e335adef5fca6af09ae5f9af312274dbb535b652c183b1aff -SIZE (mcmc-jags/jags_user_manual.pdf) = 221001 +SHA256 (mcmc-jags/JAGS-2.2.0.tar.gz) = 6615207cc19463c6398a8c5d02bfc0e3a659928d7da928396f95a63409addd04 +SIZE (mcmc-jags/JAGS-2.2.0.tar.gz) = 1621102 +SHA256 (mcmc-jags/classic-bugs.tar.gz) = ae6f9e25f00a3c2bf2d67c8b3fe040f937551ef75407ae0bd8cad5cbc3a8f768 +SIZE (mcmc-jags/classic-bugs.tar.gz) = 81419 +SHA256 (mcmc-jags/jags_developer_manual.pdf) = 6e7c707b94ffc931807198cc162e8b254859bb774695ae39ef1c1c175560259b +SIZE (mcmc-jags/jags_developer_manual.pdf) = 71319 +SHA256 (mcmc-jags/jags_installation_manual.pdf) = abce36d30b47da443714b08eaec537a97ca5196f2dd5c6ce3816e5b1035125dc +SIZE (mcmc-jags/jags_installation_manual.pdf) = 118975 +SHA256 (mcmc-jags/jags_user_manual.pdf) = 77d4c2c7160596c34a5d3cec307d66efc44825e965ab43b83ef59fa349999964 +SIZE (mcmc-jags/jags_user_manual.pdf) = 223214 diff -urN jags.orig/pkg-plist jags/pkg-plist --- jags.orig/pkg-plist 2011-01-16 15:44:30.000000000 +0800 +++ jags/pkg-plist 2011-01-16 16:01:31.000000000 +0800 @@ -15,11 +15,7 @@ include/JAGS/distribution/DistPtr.h include/JAGS/distribution/DistTab.h include/JAGS/distribution/Distribution.h -include/JAGS/distribution/RNG.h -include/JAGS/distribution/RNGFactory.h -include/JAGS/distribution/RmathRNG.h include/JAGS/distribution/ScalarDist.h -include/JAGS/distribution/TruncatedNormal.h include/JAGS/distribution/VectorDist.h include/JAGS/function/ArrayFunction.h include/JAGS/function/FuncTab.h @@ -54,6 +50,10 @@ include/JAGS/model/MonitorInfo.h include/JAGS/model/NodeArray.h include/JAGS/model/SymTab.h +include/JAGS/rng/RNG.h +include/JAGS/rng/RmathRNG.h +include/JAGS/rng/RNGFactory.h +include/JAGS/rng/TruncatedNormal.h include/JAGS/sampler/GraphView.h include/JAGS/sampler/Linear.h include/JAGS/sampler/Metropolis.h @@ -462,6 +462,7 @@ @dirrm include/JAGS/util @dirrm include/JAGS/sarray @dirrm include/JAGS/sampler +@dirrm include/JAGS/rng @dirrm include/JAGS/model @dirrm include/JAGS/graph @dirrm include/JAGS/function >Release-Note: >Audit-Trail: >Unformatted:
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