Date: Fri, 20 Aug 2010 07:11:51 GMT From: C-S <c-s@c-s.li> To: freebsd-gnats-submit@FreeBSD.org Subject: ports/149827: [UPDATE] biology/avida Message-ID: <201008200711.o7K7BpEW092002@www.freebsd.org> Resent-Message-ID: <201008200720.o7K7K4Om011779@freefall.freebsd.org>
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>Number: 149827 >Category: ports >Synopsis: [UPDATE] biology/avida >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Fri Aug 20 07:20:03 UTC 2010 >Closed-Date: >Last-Modified: >Originator: C-S >Release: >Organization: >Environment: >Description: Update to latest version and I'd take maintainership. >How-To-Repeat: >Fix: Patch attached with submission follows: diff -urN avida.orig/Makefile avida/Makefile --- avida.orig/Makefile 2010-08-20 09:02:26.743106115 +0200 +++ avida/Makefile 2010-08-20 09:01:35.043263658 +0200 @@ -6,19 +6,19 @@ # PORTNAME= avida -PORTVERSION= 2.8.1 -PORTREVISION= 1 +PORTVERSION= 2.10.0 CATEGORIES= biology MASTER_SITES= SF/${PORTNAME}/${PORTNAME}-stable/${PORTVERSION} DISTNAME= ${PORTNAME}-${PORTVERSION}-src -MAINTAINER= ports@FreeBSD.org +MAINTAINER= c-s@c-s.li COMMENT= Avida is an auto-adaptive genetic system designed for ALife research +LICENSE= GPLv2 + USE_CMAKE= yes USE_GCC= 4.2+ - -WRKSRC= ${WRKDIR}/${PORTNAME}-src-${PORTVERSION} +MAKE_JOBS_SAFE= yes PORTDOCS= * @@ -27,7 +27,6 @@ post-install: ${INSTALL_PROGRAM} ${WRKSRC}/work/avida ${PREFIX}/bin - ${INSTALL_PROGRAM} ${WRKSRC}/work/avida-viewer ${PREFIX}/bin ${MKDIR} ${DATADIR} ${INSTALL_DATA} ${WRKSRC}/work/*.cfg ${WRKSRC}/work/*.org ${DATADIR} .if !defined(NOPORTDOCS) diff -urN avida.orig/distinfo avida/distinfo --- avida.orig/distinfo 2010-08-20 09:02:26.743106115 +0200 +++ avida/distinfo 2010-08-20 09:01:35.043263658 +0200 @@ -1,3 +1,3 @@ -MD5 (avida-2.8.1-src.tar.gz) = 99d9405921a23df1813e34c96106cd47 -SHA256 (avida-2.8.1-src.tar.gz) = 554a82081f550e49f795ecda34d6e19a91239e8dc500b6590f46d08839179ef7 -SIZE (avida-2.8.1-src.tar.gz) = 1609168 +MD5 (avida-2.10.0-src.tar.gz) = d8d79afe8d19cc3d1f4c8ebb515dd59b +SHA256 (avida-2.10.0-src.tar.gz) = 351d87dad2a35eb005b466dc0e7731195b4a824edbbde7818ef633b5803319db +SIZE (avida-2.10.0-src.tar.gz) = 5657331 diff -urN avida.orig/files/patch-source-main-cTaskLib.cc avida/files/patch-source-main-cTaskLib.cc --- avida.orig/files/patch-source-main-cTaskLib.cc 2010-08-20 09:02:26.742105172 +0200 +++ avida/files/patch-source-main-cTaskLib.cc 1970-01-01 01:00:00.000000000 +0100 @@ -1,12 +0,0 @@ ---- source/main/cTaskLib.cc.orig 2007-09-05 23:53:07.000000000 +0400 -+++ source/main/cTaskLib.cc 2008-10-13 19:32:10.000000000 +0400 -@@ -41,8 +41,8 @@ - // Various workarounds for Visual Studio shortcomings - #if AVIDA_PLATFORM(WINDOWS) - # define llabs(x) _abs64(x) --# define log2(x) (log(x)/log(2.0)) - #endif -+# define log2(x) (log(x)/log(2.0)) - - static const double dCastPrecision = 100000.0; - diff -urN avida.orig/pkg-descr avida/pkg-descr --- avida.orig/pkg-descr 2010-08-20 09:02:26.743106115 +0200 +++ avida/pkg-descr 2010-08-20 09:01:35.043263658 +0200 @@ -10,4 +10,4 @@ self-organization), and other issues pertaining to theoretical or evolutionary biology and dynamic systems. -WWW: http://dllab.caltech.edu/avida/ +WWW: http://avida.devosoft.org/ diff -urN avida.orig/pkg-plist avida/pkg-plist --- avida.orig/pkg-plist 2010-08-20 09:02:26.743106115 +0200 +++ avida/pkg-plist 2010-08-20 09:01:35.044268235 +0200 @@ -1,15 +1,12 @@ bin/avida -bin/avida-viewer %%DATADIR%%/analyze.cfg %%DATADIR%%/avida.cfg -%%DATADIR%%/default-classic.org -%%DATADIR%%/default-sex-classic.org -%%DATADIR%%/default-smt.org +%%DATADIR%%/default-heads-sex.org +%%DATADIR%%/default-heads.org %%DATADIR%%/default-transsmt.org %%DATADIR%%/environment.cfg %%DATADIR%%/events.cfg -%%DATADIR%%/instset-classic.cfg -%%DATADIR%%/instset-sex-classic.cfg -%%DATADIR%%/instset-smt.cfg +%%DATADIR%%/instset-heads-sex.cfg +%%DATADIR%%/instset-heads.cfg %%DATADIR%%/instset-transsmt.cfg @dirrm %%DATADIR%% >Release-Note: >Audit-Trail: >Unformatted:
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