Date: Fri, 23 May 2014 20:55:25 +0900 (JST) From: Tsurutani Naoki <turutani@scphys.kyoto-u.ac.jp> To: FreeBSD-gnats-submit@freebsd.org Cc: turutani@scphys.kyoto-u.ac.jp Subject: ports/190138: building science/hdf5 fails Message-ID: <201405231155.s4NBtPjV054303@h116.65.226.10.32118.vlan.kuins.net> Resent-Message-ID: <201405231200.s4NC007l014271@freefall.freebsd.org>
next in thread | raw e-mail | index | archive | help
>Number: 190138 >Category: ports >Synopsis: building science/hdf5 fails >Confidential: no >Severity: serious >Priority: medium >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: sw-bug >Submitter-Id: current-users >Arrival-Date: Fri May 23 12:00:00 UTC 2014 >Closed-Date: >Last-Modified: >Originator: Tsurutani Naoki >Release: FreeBSD 8.4-STABLE amd64 >Organization: >Environment: System: FreeBSD h116.65.226.10.32118.vlan.kuins.net 8.4-STABLE FreeBSD 8.4-STABLE #3 r266560: Fri May 23 07:44:20 JST 2014 turutani@h116.65.226.10.32118.vlan.kuins.net:/usr/local/work/usr/obj/usr/src/sys/POLYMER13 amd64 >Description: building science/hdf5 fails. >How-To-Repeat: % make t.c: In function 'h5_exit_c_': t.c:137: warning: function might be possible candidate for attribute 'noreturn' t.c: In function 'h5_cleanup_c_': t.c:117: warning: will never be executed t.c: In function 'h5_fixname_c_': t.c:66: warning: will never be executed FC fortranlib_test-tH5D.o tH5F.f90:43.12: tH5F.f90:43.12: USE TH5_MISC 1 Fatal Error: Can't open module file 'th5_misc.mod' for reading at (1): No such file or directory USE TH5_MISC 1 Fatal Error: Can't open module file 'th5_misc.mod' for reading at (1): No such file or directory *** Error code 1 *** Error code 1 tH5D.f90:42.12: USE TH5_MISC 1 Fatal Error: Can't open module file 'th5_misc.mod' for reading at (1): No such file or directory *** Error code 1 3 errors *** Error code 1 1 error *** Error code 1 1 error ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop in /usr/ports/science/hdf5. *** Error code 1 Stop in /usr/ports/science/hdf5. >Fix: The file 'th5_misc.mod' exists. This might be caused by parallel building. Adding "MAKE_JOBS_UNSAFE=yes" to Makefile can avoid this. In addition, installing fails with wrong pkg-plist. Here is a patch: diff -urN hdf5.orig/Makefile hdf5/Makefile --- hdf5.orig/Makefile 2014-05-20 03:38:48.000000000 +0900 +++ hdf5/Makefile 2014-05-23 20:42:12.000000000 +0900 @@ -12,6 +12,7 @@ COMMENT= Hierarchical Data Format library (from NCSA) LICENSE= BSD4CLAUSE +MAKE_JOBS_UNSAFE= yes CONFLICTS_INSTALL= hdf-4.[0-9]* hdf5-1.6.[0-9]* diff -urN hdf5.orig/pkg-plist hdf5/pkg-plist --- hdf5.orig/pkg-plist 2014-05-20 03:38:48.000000000 +0900 +++ hdf5/pkg-plist 2014-05-23 20:39:59.000000000 +0900 @@ -148,4 +148,4 @@ %%FORTRAN%%lib/libhdf5hl_fortran.a %%FORTRAN%%lib/libhdf5hl_fortran.so %%FORTRAN%%lib/libhdf5hl_fortran.so.8 -%%FORTRAN%%lib/libhdf5hl_fortran.so.8.0.1 +%%FORTRAN%%lib/libhdf5hl_fortran.so.8.0.2 >Release-Note: >Audit-Trail: >Unformatted:
Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?201405231155.s4NBtPjV054303>