Date: Thu, 19 Jun 2003 20:28:03 +0100 From: Bruno Afonso <brunomiguel@dequim.ist.utl.pt> To: freebsd-java@freebsd.org Subject: Odd problem with native jdk.1.4.1 and jalview Message-ID: <3EF20EC3.20304@dequim.ist.utl.pt>
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Hey, I am having a strange problem that I would like to share with you since it appears to me to be a problem in the native jdk 1.4.1 :-) The problem lies in a program to edit and view multiple alignments (biology stuff, you don't really need to know what this is ;) Here's how to reproduce it: create a script.sh cheetah% cat script.sh ------- #!/bin/sh cd ~ mkdir testdir cd testdir # grab jalview's latest and greatest wget http://www2.ebi.ac.uk/~michele/jalview/dist/source-1.7.5b.tgz tar -zxvf source-1.7.5b.tgz javac jalview/AlignFrame.java # grab the alignment file. :-) wget http://bio98.ist.utl.pt/~bruno/mfsmdr12.aln java jalview.AlignFrame mfsmdr12.aln File CLUSTAL /usr/local/linux-sun-jdk1.4.1/bin/java jalview.AlignFrame mfsmdr12.aln File CLUSTAL ------- And now the problem: The first time the app comes up, in the file dir, say to save postscript to local file. Sometimes I can't even open a dialog box with "browse" and I have never ever been able to save the alignment. :-) Now, this werks with java from linux jdk1.4.1... (the second time the app comes up). Ideas? I'm out of them :) -- Bruno Miguel Afonso Biological Eng. student. D.E.Q. @ I.S.T. - Portugal
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