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Date:      Fri, 13 Mar 2020 07:04:24 -0600
From:      Gary Aitken <freebsd@dreamchaser.org>
To:        Polytropon <freebsd@edvax.de>
Cc:        FreeBSD Mailing List <freebsd-questions@freebsd.org>
Subject:   Re: "directory not empty", "no such file or directory" errors on upgrade
Message-ID:  <38fde868-7d2b-d396-449b-973ac9c39963@dreamchaser.org>
In-Reply-To: <20200312235749.5e10fb02.freebsd@edvax.de>
References:  <c6e1a79d-2ce9-52a3-9039-d5f3b727cc49@dreamchaser.org> <20200312235749.5e10fb02.freebsd@edvax.de>

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On 3/12/20 4:57 PM, Polytropon wrote:
> On Thu, 12 Mar 2020 13:03:27 -0600, Gary Aitken wrote:
>> Upgrading from 11.2-RELEASE to 11.3-RELEASE
>>
>> The final invoke of freebsd-update install completed with the following
>> messages:
>>
>> ///usr/src/sys/pc98/include/acpica_machdep.h  no such file or directory
>> rmdir: ///usr/src/contrib/ofed/usr.lib        directory not empty
>> rmdir: ///usr/src/contrib/ofed/usr.bin        directory not empty
>> rmdir: ///usr/src/contrib/llvm/tools/lldb/source/Plugins/InstrumentationRuntime/ThreadSanitizer   directory not empty
>> rmdir: ///usr/src/contrib/llvm/tools/lldb/source/Plugins/InstrumentationRuntime/AddressSanitizer  directory not empty
>>
>> The upgraded system has no
>>     /usr/src/sys/pc98/  directory
>>
>> The files in
>>     /usr/src/contrib/ofed/usr.lib
>>     /usr/src/contrib/ofed/usr.bin
>>     /usr/src/contrib/llvm/tools/lldb/source/Plugins/InstrumentationRuntime/ThreadSanitizer
>>     /usr/src/contrib/llvm/tools/lldb/source/Plugins/InstrumentationRuntime/AddressSanitizer
>>
>> appear to be old versions left over from the original 11.2 install
>>
>> Hints on the proper way to fix this?
> 
> When I read such messages, the first thing that comes to mind
> is filesystem inconsistency. Reboot into single-user mode and
> run a forced (!) fsck on all file systems, maybe repeat it if
> needed.

fsck reported all clean.

> You probably don't have
> 
> 	background_fsck="NO"
> 
> in your /etc/rc.conf which in my opinion should be the default
> setting (instead of YES). See "man 8 fsck" for further options
> that might be needed.

Thanks for the reminder; I used to have it set but on this rebuilt-
after-a-crash system lost it.

> Things like "directory not empty" can also be due to files that
> haven't been removed. This is possible if the schg (immutable)
> flag has been set for a file; use "chflags noschg <file>"; see
> "man 1 chflags" for details.
> 
> First step: Always rule out the obvious. ;-)

The remaining question is:
Are those directories supposed to be repopulated
with more recent versions?  Or should they simply be removed?
If they need to be repopulated, how does one repopulate them?

Thanks,
Gary



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