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Date:      Thu, 8 Oct 2015 16:43:23 GMT
From:      pkg-fallout@FreeBSD.org
To:        haskell@FreeBSD.org
Cc:        pkg-fallout@FreeBSD.org
Subject:   [package - 101amd64-default][science/hs-bio] Failed for hs-bio-0.5.3_2 in build
Message-ID:  <201510081643.t98GhNQA028402@beefy6.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     haskell@FreeBSD.org
Last committer: pgj@FreeBSD.org
Ident:          $FreeBSD: head/science/hs-bio/Makefile 394918 2015-08-20 23:02:14Z pgj $
Log URL:        http://beefy6.nyi.freebsd.org/data/101amd64-default/398789/logs/hs-bio-0.5.3_2.log
Build URL:      http://beefy6.nyi.freebsd.org/build.html?mastername=101amd64-default&build=398789
Log:

====>> Building science/hs-bio
build started at Thu Oct  8 16:40:49 UTC 2015
port directory: /usr/ports/science/hs-bio
building for: FreeBSD 101amd64-default-job-11 10.1-RELEASE-p22 FreeBSD 10.1-RELEASE-p22 amd64
maintained by: haskell@FreeBSD.org
Makefile ident:      $FreeBSD: head/science/hs-bio/Makefile 394918 2015-08-20 23:02:14Z pgj $
Poudriere version: 3.1.8
Host OSVERSION: 1100077
Jail OSVERSION: 1001000

---Begin Environment---
SHELL=/bin/csh
OSVERSION=1001000
UNAME_v=FreeBSD 10.1-RELEASE-p22
UNAME_r=10.1-RELEASE-p22
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/101amd64-default/ref
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=hs-bio-0.5.3_2
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/101amd64-default/ref/.p/pool
MASTERNAME=101amd64-default
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.8
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
---End Environment---

---Begin OPTIONS List---
===> The following configuration options are available for hs-bio-0.5.3_2:
     DOCS=on: Build and/or install documentation
     DYNAMIC=on: Add support for dynamic linking
     HSCOLOUR=off: Colorize generated documentation by HsColour
     LLVM=off: Use the LLVM backend for code generation
     PROFILE=off: Add support for profiling
====> Options available for the single C_Compiler: you have to select exactly one of them
     GCC=on: Build with GCC (from ports)
     PCLANG=off: Build with Clang from ports
     BCLANG=off: Build with Clang from base
===> Use 'make config' to modify these settings
---End OPTIONS List---

--CONFIGURE_ARGS--
--libdir=/usr/local/lib/cabal/ghc-7.10.2 --libsubdir=bio-0.5.3 --with-gcc=gcc48 --with-ld=/usr/local/bin/ld --with-ar=/usr/local/bin/ar --enable-executable-stripping --haddock-options=-w --with-haddock=/usr/local/bin/haddock --enable-shared --enable-executable-dynamic --disable-executable-profiling --disable-library-profiling
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/science/hs-bio/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/hs-bio/work  HOME=/wrkdirs/usr/ports/science/hs-bio/work TMPDIR="/wrkdirs/usr/ports/science/hs-bio/work/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
LC_ALL=en_US.UTF-8 LANG=en_US.UTF-8 DESTDIR=/wrkdirs/usr/ports/science/hs-bio/work/stage  TMPDIR=/wrkdirs/usr/ports/science/hs-bio/work/tmp XDG_DATA_HOME=/wrkdirs/usr/ports/science/hs-bio/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/hs-bio/work  HOME=/wrkdirs/usr/ports/science/hs-bio/work TMPDIR="/wrkdirs/usr/ports/science/hs-bio/work/tmp" NO_PIE=yes SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="gcc48" CFLAGS="-O2 -pipe  -I/usr/local/include -DLIBICONV_PLUG -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing"  CPP="cpp48" CPPFLAGS="-I/usr/local
 /include -DLIBICONV_PLUG"  LDFLAGS=" -L/usr/local/lib -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -L/usr/local/lib/gcc48" LIBS=""  CXX="g++48" CXXFLAGS="-O2 -pipe -I/usr/local/include -DLIBICONV_PLUG -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing  -DLIBICONV_PLUG -Wl,-rpath=/usr/local/lib/gcc48"  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
GHC_VERSION=7.10.2
PORTNAME=bio
PORTVERSION=0.5.3
LIBDIR_REL=lib/cabal/ghc-7.10.2/bio-0.5.3
OSREL=10.1
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/cabal/ghc-7.10.2/bio-0.5.3"
EXAMPLESDIR="share/examples/cabal/ghc-7.10.2/bio-0.5.3"
DATADIR="share/cabal/ghc-7.10.2/bio-0.5.3"
WWWDIR="www/bio"
ETCDIR="etc/bio"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/cabal/ghc-7.10.2/bio-0.5.3
DOCSDIR=/usr/local/share/doc/cabal/ghc-7.10.2/bio-0.5.3
EXAMPLESDIR=/usr/local/share/examples/cabal/ghc-7.10.2/bio-0.5.3
WWWDIR=/usr/local/www/bio
ETCDIR=/usr/local/etc/bio
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
=======================<phase: check-sanity   >============================
===>  License LGPL21 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   hs-bio-0.5.3_2 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.6.1.txz
[101amd64-default-job-11] Installing pkg-1.6.1...
[101amd64-default-job-11] Extracting pkg-1.6.1: .......... done
Message from pkg-1.6.1:
If you are upgrading from the old package format, first run:

  # pkg2ng
===>   hs-bio-0.5.3_2 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of hs-bio-0.5.3_2
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License LGPL21 accepted by the user
===> Fetching all distfiles required by hs-bio-0.5.3_2 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License LGPL21 accepted by the user
===> Fetching all distfiles required by hs-bio-0.5.3_2 for building
=> SHA256 Checksum OK for cabal/bio-0.5.3.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License LGPL21 accepted by the user
===> Fetching all distfiles required by hs-bio-0.5.3_2 for building
===>  Extracting for hs-bio-0.5.3_2
=> SHA256 Checksum OK for cabal/bio-0.5.3.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for hs-bio-0.5.3_2
===>  Applying FreeBSD patches for hs-bio-0.5.3_2
===========================================================================
=======================<phase: build-depends  >============================
===>   hs-bio-0.5.3_2 depends on executable: ghc - not found
===>   Installing existing package /packages/All/ghc-7.10.2.txz
[101amd64-default-job-11] Installing ghc-7.10.2...
[101amd64-default-job-11] `-- Installing libiconv-1.14_8...
[101amd64-default-job-11] `-- Extracting libiconv-1.14_8: .......... done
[101amd64-default-job-11] `-- Installing gmp-5.1.3_2...
[101amd64-default-job-11] |   `-- Installing indexinfo-0.2.3...
[101amd64-default-job-11] |   `-- Extracting indexinfo-0.2.3: .... done
[101amd64-default-job-11] `-- Extracting gmp-5.1.3_2: .......... done
[101amd64-default-job-11] `-- Installing libffi-3.2.1...
[101amd64-default-job-11] `-- Extracting libffi-3.2.1: .......... done
[101amd64-default-job-11] `-- Installing gcc-4.8.5...
[101amd64-default-job-11] |   `-- Installing mpc-1.0.3...
[101amd64-default-job-11] |   | `-- Installing mpfr-3.1.2_2...
[101amd64-default-job-11] |   | `-- Extracting mpfr-3.1.2_2: .......... done
[101amd64-default-job-11] |   `-- Extracting mpc-1.0.3: ...... done
[101amd64-default-job-11] |   `-- Installing binutils-2.25.1...
[101amd64-default-job-11] |   | `-- Installing gettext-runtime-0.19.6...
[101amd64-default-job-11] |   | `-- Extracting gettext-runtime-0.19.6: .......... done
[101amd64-default-job-11] |   `-- Extracting binutils-2.25.1: .......... done
[101amd64-default-job-11] |   `-- Installing gcc-ecj-4.5...
[101amd64-default-job-11] |   `-- Extracting gcc-ecj-4.5: . done
[101amd64-default-job-11] `-- Extracting gcc-4.8.5: .......... done
[101amd64-default-job-11] Extracting ghc-7.10.2: .......... done
Message from gcc-4.8.5:
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc48

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===>   hs-bio-0.5.3_2 depends on executable: ghc - found
===>   Returning to build of hs-bio-0.5.3_2
===>   hs-bio-0.5.3_2 depends on package: ghc>=7.10.2 - found
===>   hs-bio-0.5.3_2 depends on package: hs-mtl>=0 - not found
===>   Installing existing package /packages/All/hs-mtl-2.2.1.txz
[101amd64-default-job-11] Installing hs-mtl-2.2.1...
[101amd64-default-job-11] Extracting hs-mtl-2.2.1: .......... done
===>   hs-bio-0.5.3_2 depends on package: hs-mtl>=0 - found
===>   Returning to build of hs-bio-0.5.3_2
===>   hs-bio-0.5.3_2 depends on package: hs-old-time>=0 - not found
===>   Installing existing package /packages/All/hs-old-time-1.1.0.3.txz
[101amd64-default-job-11] Installing hs-old-time-1.1.0.3...
[101amd64-default-job-11] `-- Installing hs-old-locale-1.0.0.7...
[101amd64-default-job-11] `-- Extracting hs-old-locale-1.0.0.7: .......... done
[101amd64-default-job-11] Extracting hs-old-time-1.1.0.3: .......... done
===>   hs-bio-0.5.3_2 depends on package: hs-old-time>=0 - found
===>   Returning to build of hs-bio-0.5.3_2
===>   hs-bio-0.5.3_2 depends on package: hs-parallel>=0 - not found
===>   Installing existing package /packages/All/hs-parallel-3.2.0.6.txz
[101amd64-default-job-11] Installing hs-parallel-3.2.0.6...
[101amd64-default-job-11] Extracting hs-parallel-3.2.0.6: .......... done
===>   hs-bio-0.5.3_2 depends on package: hs-parallel>=0 - found
===>   Returning to build of hs-bio-0.5.3_2
===>   hs-bio-0.5.3_2 depends on package: hs-parsec>=0 - not found
===>   Installing existing package /packages/All/hs-parsec-3.1.9.txz
<snip>

Bio/GFF3/FeatureHier.hs:72:12: Warning:
    In the use of type constructor or class ‘Error’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

Bio/GFF3/FeatureHier.hs:77:48: Warning:
    In the use of ‘strMsg’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

Bio/GFF3/FeatureHier.hs:81:56: Warning:
    In the use of ‘strMsg’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

Bio/GFF3/FeatureHier.hs:83:49: Warning:
    In the use of ‘strMsg’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

Bio/GFF3/FeatureHier.hs:86:57: Warning:
    In the use of ‘strMsg’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"
[43 of 46] Compiling Bio.GFF3.FeatureHierSequences ( Bio/GFF3/FeatureHierSequences.hs, dist/build/Bio/GFF3/FeatureHierSequences.o )

Bio/GFF3/FeatureHierSequences.hs:12:1: Warning:
    Module ‘Control.Monad.Error’ is deprecated:
      Use Control.Monad.Except instead

Bio/GFF3/FeatureHierSequences.hs:32:11: Warning:
    In the use of type constructor or class ‘Error’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

Bio/GFF3/FeatureHierSequences.hs:36:15: Warning:
    In the use of type constructor or class ‘Error’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

Bio/GFF3/FeatureHierSequences.hs:42:45: Warning:
    In the use of ‘strMsg’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

Bio/GFF3/FeatureHierSequences.hs:52:14: Warning:
    In the use of type constructor or class ‘Error’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

Bio/GFF3/FeatureHierSequences.hs:61:13: Warning:
    In the use of type constructor or class ‘Error’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

Bio/GFF3/FeatureHierSequences.hs:65:17: Warning:
    In the use of type constructor or class ‘Error’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

Bio/GFF3/FeatureHierSequences.hs:67:40: Warning:
    In the use of ‘strMsg’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

Bio/GFF3/FeatureHierSequences.hs:69:21: Warning:
    In the use of type constructor or class ‘Error’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

Bio/GFF3/FeatureHierSequences.hs:74:26: Warning:
    In the use of type constructor or class ‘ErrorT’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

Bio/GFF3/FeatureHierSequences.hs:75:19: Warning:
    In the use of data constructor ‘ErrorT’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

Bio/GFF3/FeatureHierSequences.hs:75:28: Warning:
    In the use of ‘runErrorT’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

Bio/GFF3/FeatureHierSequences.hs:77:24: Warning:
    In the use of type constructor or class ‘ErrorT’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

Bio/GFF3/FeatureHierSequences.hs:77:74: Warning:
    In the use of type constructor or class ‘ErrorT’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

Bio/GFF3/FeatureHierSequences.hs:80:61: Warning:
    In the use of ‘runErrorT’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

Bio/GFF3/FeatureHierSequences.hs:82:26: Warning:
    In the use of type constructor or class ‘ErrorT’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

Bio/GFF3/FeatureHierSequences.hs:82:80: Warning:
    In the use of type constructor or class ‘ErrorT’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

Bio/GFF3/FeatureHierSequences.hs:85:26: Warning:
    In the use of ‘mapErrorT’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

Bio/GFF3/FeatureHierSequences.hs:87:13: Warning:
    In the use of type constructor or class ‘Error’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"
[44 of 46] Compiling Bio.GFF3.SGD     ( Bio/GFF3/SGD.hs, dist/build/Bio/GFF3/SGD.o )

Bio/GFF3/SGD.hs:10:1: Warning:
    Module ‘Control.Monad.Error’ is deprecated:
      Use Control.Monad.Except instead

Bio/GFF3/SGD.hs:48:18: Warning:
    In the use of type constructor or class ‘Error’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

Bio/GFF3/SGD.hs:50:56: Warning:
    In the use of ‘strMsg’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

Bio/GFF3/SGD.hs:53:16: Warning:
    In the use of type constructor or class ‘Error’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

Bio/GFF3/SGD.hs:60:23: Warning:
    In the use of type constructor or class ‘Error’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

Bio/GFF3/SGD.hs:62:62: Warning:
    In the use of ‘strMsg’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

Bio/GFF3/SGD.hs:65:21: Warning:
    In the use of type constructor or class ‘Error’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

Bio/GFF3/SGD.hs:72:15: Warning:
    In the use of type constructor or class ‘Error’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

Bio/GFF3/SGD.hs:75:44: Warning:
    In the use of ‘strMsg’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

Bio/GFF3/SGD.hs:79:16: Warning:
    In the use of type constructor or class ‘Error’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

Bio/GFF3/SGD.hs:80:30: Warning:
    In the use of ‘strMsg’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

Bio/GFF3/SGD.hs:85:28: Warning:
    In the use of ‘strMsg’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

Bio/GFF3/SGD.hs:91:17: Warning:
    In the use of type constructor or class ‘Error’
    (imported from Control.Monad.Error, but defined in transformers-0.4.2.0:Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"
[45 of 46] Compiling Bio.Sequence     ( Bio/Sequence.hs, dist/build/Bio/Sequence.o )
[46 of 46] Compiling Bio.Alignment.Multiple ( Bio/Alignment/Multiple.hs, dist/build/Bio/Alignment/Multiple.o )
In-place registering bio-0.5.3...
Preprocessing executable 'flx' for bio-0.5.3...
[1 of 4] Compiling Bio.Sequence.SFF_name ( Bio/Sequence/SFF_name.hs, dist/build/flx/flx-tmp/Bio/Sequence/SFF_name.dyn_o )
[2 of 4] Compiling Bio.Sequence.SeqData ( Bio/Sequence/SeqData.hs, dist/build/flx/flx-tmp/Bio/Sequence/SeqData.dyn_o )
[3 of 4] Compiling Bio.Sequence.SFF ( Bio/Sequence/SFF.hs, dist/build/flx/flx-tmp/Bio/Sequence/SFF.dyn_o )
[4 of 4] Compiling Main             ( examples/Flx.hs, dist/build/flx/flx-tmp/Main.dyn_o )
Linking dist/build/flx/flx ...
Preprocessing executable 'fastout' for bio-0.5.3...
[ 1 of 11] Compiling Bio.Sequence.SFF_name ( Bio/Sequence/SFF_name.hs, dist/build/fastout/fastout-tmp/Bio/Sequence/SFF_name.dyn_o )
*** Signal 10

Stop.
make: stopped in /usr/ports/science/hs-bio



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