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Date:      Mon, 26 Jan 2009 21:55:02 +0200
From:      =?UTF-8?B?U29yaW4gUMOibmNh?= <sorin.panca@psrk.com>
To:        freebsd-stable@freebsd.org
Cc:        Massimo Fusaro <mcfusaro@gmail.com>
Subject:   Re: Installing packages using ports after freebsd-update doesn't work on amd64
Message-ID:  <497E1516.1060802@psrk.com>
In-Reply-To: <60f6f5610901261058n51d40c42x333a854b19877d28@mail.gmail.com>
References:  <497D68C8.7090605@psrk.com> <60f6f5610901261058n51d40c42x333a854b19877d28@mail.gmail.com>
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Massimo Fusaro wrote:
> 2009/1/26 Sorin Panca <sorin.panca@psrk.com>:
>> Tore Lund wrote:
>>> Sorin Panca wrote:
>>>> Prior to starting the upgrade I did a pkg_delete -a. I wanted a clean
>>>> system (just like a reinstallation). How do I ensure that all packages
>>>> were removed by pkg_delete -a ?
>>> I cannot help wonder why you try to do a binary update.  Saving some
>>> configuration files and doing a reinstall might have been easier IMO.
>> I'm located in Europe, while the server is in the US. I also think that
>> a serious OS should be upgradable both from source and binaries without
>> booting it from other media, at runtime. Asking people near that server
>> to do something I should be able to do is never a good option.
>>
>> Regards,
>> Sorin.
>> _______________________________________________
>> freebsd-stable@freebsd.org mailing list
>> http://lists.freebsd.org/mailman/listinfo/freebsd-stable
>> To unsubscribe, send any mail to "freebsd-stable-unsubscribe@freebsd.org"
>>
> 
> Please remove the directory /var/db/ports/ruby and stick to default
> CFLAGS by removing all CFLAGS definitions from /etc/make.conf (you can
> add your options later)
> 
> It seems that ruby always uses "-pthread" even if threading is not
> enabled, -fPIC in NOT needed.
> 
> Check that libpthread.* is a symlink to libthr.* and that libthr.so ->
> /lib/libthr.so.3

The libthr symlinks are as you described them.
(As I said in my latest post, I think that not only ruby is affected by
this 'bug', but all ports that try to link against libpthread. I
installed ruby using pkg_add, but I continue to experiment with python.
Using make config, I selected THREADING and deselected IPV6.)

I commented out the CFLAGS line in /etc/make.conf, then:

# cd /usr/ports/lang/python25
# rm -rf /var/db/ports/python25
# make clean
===>  Cleaning for python25-2.5.2_3
# make install clean
[...]
cc -c -fno-strict-aliasing -DNDEBUG -O2 -fno-strict-aliasing -pipe
-D__wchar_t=wchar_t  -DTHREAD_STACK_SIZE=0x20000  -I. -IInclude
-I./../Include -fPIC -DPy_BUILD_CORE -DSVNVERSION=\"`LC_ALL=C echo
exported`\" -o Modules/getbuildinfo.o ./../Modules/getbuildinfo.c
if test libpython2.5.so != libpython2.5.so; then  cc -shared -pthread
-Wl,-hlibpython2.5.so -o libpython2.5.so Modules/_typesmodule.o
Modules/getbuildinfo.o  Parser/acceler.o  Parser/grammar1.o
Parser/listnode.o  Parser/node.o  Parser/parser.o  Parser/parsetok.o
Parser/bitset.o  Parser/metagrammar.o  Parser/firstsets.o
Parser/grammar.o  Parser/pgen.o Parser/myreadline.o Parser/tokenizer.o
Objects/abstract.o  Objects/boolobject.o  Objects/bufferobject.o
Objects/cellobject.o  Objects/classobject.o  Objects/cobject.o
Objects/codeobject.o  Objects/complexobject.o  Objects/descrobject.o
Objects/enumobject.o  Objects/exceptions.o  Objects/genobject.o
Objects/fileobject.o  Objects/floatobject.o  Objects/frameobject.o
Objects/funcobject.o  Objects/intobject.o  Objects/iterobject.o
Objects/listobject.o  Objects/longobject.o  Objects/dictobject.o
Objects/methodobject.o  Objects/moduleobject.o  Objects/object.o
Objects/obmalloc.o  Objects/rangeobject.o  Objects/setobject.o
Objects/sliceobject.o  Objects/stringobject.o  Objects/structseq.o
Objects/tupleobject.o  Objects/typeobject.o  Objects/weakrefobject.o
Objects/unicodeobject.o Objects/unicodectype.o  Python/Python-ast.o
Python/asdl.o  Python/ast.o  Python/bltinmodule.o  Python/ceval.o
Python/compile.o  Python/codecs.o  Python/errors.o  Python/frozen.o
Python/frozenmain.o  Python/future.o  Python/getargs.o
Python/getcompiler.o  Python/getcopyright.o  Python/getmtime.o
Python/getplatform.o  Python/getversion.o  Python/graminit.o
Python/import.o  Python/importdl.o  Python/marshal.o
Python/modsupport.o  Python/mystrtoul.o  Python/mysnprintf.o
Python/pyarena.o  Python/pyfpe.o  Python/pystate.o  Python/pythonrun.o
Python/structmember.o  Python/symtable.o  Python/sysmodule.o
Python/traceback.o  Python/getopt.o  Python/pystrtod.o
Python/dynload_shlib.o    Python/thread.o  Modules/config.o
Modules/getpath.o  Modules/main.o  Modules/gcmodule.o
Modules/threadmodule.o  Modules/signalmodule.o  Modules/posixmodule.o
Modules/errnomodule.o  Modules/pwdmodule.o  Modules/_sre.o
Modules/_codecsmodule.o  Modules/zipimport.o  Modules/symtablemodule.o
Modules/xxsubtype.o -lutil  -lm;  ln -f libpython2.5.so libpython2.5.so;
 else cc -shared -pthread -o libpython2.5.so Modules/_typesmodule.o
Modules/getbuildinfo.o  Parser/acceler.o  Parser/grammar1.o
Parser/listnode.o  Parser/node.o  Parser/parser.o  Parser/parsetok.o
Parser/bitset.o  Parser/metagrammar.o
Parser/firstsets.oParser/grammar.o  Parser/pgen.o Parser/myreadline.o
Parser/tokenizer.o  Objects/abstract.o  Objects/boolobject.o
Objects/bufferobject.o  Objects/cellobject.o  Objects/classobject.o
Objects/cobject.o  Objects/codeobject.o  Objects/complexobject.o
Objects/descrobject.o  Objects/enumobject.o  Objects/exceptions.o
Objects/genobject.o  Objects/fileobject.o  Objects/floatobject.o
Objects/frameobject.o  Objects/funcobject.o  Objects/intobject.o
Objects/iterobject.o  Objects/listobject.o  Objects/longobject.o
Objects/dictobject.o  Objects/methodobject.o  Objects/moduleobject.o
Objects/object.o  Objects/obmalloc.o  Objects/rangeobject.o
Objects/setobject.o  Objects/sliceobject.o  Objects/stringobject.o
Objects/structseq.o  Objects/tupleobject.o  Objects/typeobject.o
Objects/weakrefobject.o  Objects/unicodeobject.o Objects/unicodectype.o
 Python/Python-ast.o  Python/asdl.o  Python/ast.o  Python/bltinmodule.o
 Python/ceval.o  Python/compile.o  Python/codecs.o  Python/errors.o
Python/frozen.o  Python/frozenmain.o  Python/future.o  Python/getargs.o
 Python/getcompiler.o  Python/getcopyright.o  Python/getmtime.o
Python/getplatform.o  Python/getversion.o  Python/graminit.o
Python/import.o  Python/importdl.o  Python/marshal.o
Python/modsupport.o  Python/mystrtoul.o  Python/mysnprintf.o
Python/pyarena.o  Python/pyfpe.o  Python/pystate.o  Python/pythonrun.o
Python/structmember.o  Python/symtable.o  Python/sysmodule.o
Python/traceback.o  Python/getopt.o  Python/pystrtod.o
Python/dynload_shlib.o    Python/thread.o  Modules/config.o
Modules/getpath.o  Modules/main.o  Modules/gcmodule.o
Modules/threadmodule.o  Modules/signalmodule.o  Modules/posixmodule.o
Modules/errnomodule.o  Modules/pwdmodule.o  Modules/_sre.o
Modules/_codecsmodule.o  Modules/zipimport.o  Modules/symtablemodule.o
Modules/xxsubtype.o -lutil  -lm;  fi
/usr/bin/ld: /usr/lib/libpthread.a(thr_syscalls.o): relocation
R_X86_64_32S can not be used when making a shared object; recompile with
-fPIC
/usr/lib/libpthread.a: could not read symbols: Bad value
*** Error code 1

*If I disable THREADING however, it compiles successfully.*
Compiling ruby18 (not python25) with THREADING enabled or disabled, I
get the same  error, so I guess you are right about the -pthread flag.

Sorin

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