Date: Sat, 26 Jan 2013 07:48:56 GMT From: Veniamin Gvozdikov <g.veniamin@googlemail.com> To: freebsd-gnats-submit@FreeBSD.org Subject: ports/175601: [update]: science/massxpert up to latest version Message-ID: <201301260748.r0Q7muA9004572@red.freebsd.org> Resent-Message-ID: <201301260750.r0Q7o0ZE000830@freefall.freebsd.org>
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>Number: 175601 >Category: ports >Synopsis: [update]: science/massxpert up to latest version >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: maintainer-update >Submitter-Id: current-users >Arrival-Date: Sat Jan 26 07:50:00 UTC 2013 >Closed-Date: >Last-Modified: >Originator: Veniamin Gvozdikov >Release: FreeBSD 8.3-RELEASE-p5 >Organization: >Environment: FreeBSD ololo 8.3-RELEASE-p5 FreeBSD 8.3-RELEASE-p5 #0: Thu Dec 6 16:25:28 MSK 2012 root@ololo:/usr/obj/usr/src/sys/OLOLO amd64 >Description: The massXpert project aims at providing (bio)chemists with a software package allowing the following: * User-specific atom definitions and polymer chemistry definitions; * Powerful sequence editing with user-defined glyphs for each monomer and monomer chemical modification. Multi-region selections; * Polymer sequence chemical/enzymatic cleavage; * Intramolecular cross-linking, like disulfide bonds with total resolution of the peptides generated upon enzymatic cleavage; * Gas-phase fragmentation of oligomers; * Mass-to-charge ratio calculations with inline change of ionization agent; * Calculation of net electrical charge and of isoelectric point (even by taking into account monomer modifications if polymer is a protein); * Simulation of isotopic patterns for any chemical formula and z charge; * A number of plugins allow 1) translation of the sequence from one format to another (using a dictionary, like between the 1-letter code and the 3-letter code of proteins) 2) conversion of number format according to any localized number format 3) sort mass lists. >How-To-Repeat: >Fix: diff -ruN massxpert.orig/Makefile massxpert/Makefile --- massxpert.orig/Makefile 2013-01-26 11:46:30.572175752 +0400 +++ massxpert/Makefile 2013-01-26 00:15:41.074798294 +0400 @@ -2,7 +2,7 @@ # $FreeBSD: ports/science/massxpert/Makefile,v 1.9 2012/12/16 21:05:09 svnexp Exp $ PORTNAME= massxpert -PORTVERSION= 3.3.0 +PORTVERSION= 3.4.0 CATEGORIES= science MASTER_SITES= http://download.tuxfamily.org/massxpert/source/ @@ -19,6 +19,7 @@ LICENSE= GPLv3 +USE_BZIP2= yes USE_CMAKE= yes USE_GETTEXT= yes USE_ICONV= yes diff -ruN massxpert.orig/distinfo massxpert/distinfo --- massxpert.orig/distinfo 2013-01-26 11:46:30.572175752 +0400 +++ massxpert/distinfo 2013-01-26 00:16:58.774743398 +0400 @@ -1,2 +1,2 @@ -SHA256 (massxpert-3.3.0.tar.gz) = eed640a43825ab58dc47cad93831a767c574c93f9ee3aa37e621beb2a999177f -SIZE (massxpert-3.3.0.tar.gz) = 16853069 +SHA256 (massxpert-3.4.0.tar.bz2) = b06314722b4cbdf68dc76e55933a79487848c655fc65341a8dbc707ed89cc9e8 +SIZE (massxpert-3.4.0.tar.bz2) = 16544044 >Release-Note: >Audit-Trail: >Unformatted:
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