Date: Mon, 31 Jul 2000 17:35:33 +0200 From: johann@egenetics.com To: FreeBSD-gnats-submit@freebsd.org Subject: ports/20317: New port: biology/emboss Message-ID: <E13JHbJ-0006He-00@fling.sanbi.ac.za>
next in thread | raw e-mail | index | archive | help
>Number: 20317 >Category: ports >Synopsis: New port: biology/emboss >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Mon Jul 31 08:40:01 PDT 2000 >Closed-Date: >Last-Modified: >Originator: Johann Visagie >Release: FreeBSD 3.5-STABLE i386 >Organization: Electric Genetics / South African National Bioinformatics Institute >Environment: FreeBSD fling.sanbi.ac.za 3.5-STABLE FreeBSD 3.5-STABLE #2: Fri Jul 14 17:30:00 SAST 2000 toor@fling.sanbi.ac.za:/usr/src/sys/compile/FLING i386 >Description: New port of EMBOSS, the European Molecular Biology Open Software Suite >How-To-Repeat: N/A >Fix: # This is a shell archive. Save it in a file, remove anything before # this line, and then unpack it by entering "sh file". Note, it may # create directories; files and directories will be owned by you and # have default permissions. # # This archive contains: # # emboss # emboss/pkg # emboss/pkg/PLIST # emboss/pkg/DESCR # emboss/pkg/COMMENT # emboss/Makefile # emboss/files # emboss/files/md5 # echo c - emboss mkdir -p emboss > /dev/null 2>&1 echo c - emboss/pkg mkdir -p emboss/pkg > /dev/null 2>&1 echo x - emboss/pkg/PLIST sed 's/^X//' >emboss/pkg/PLIST << 'END-of-emboss/pkg/PLIST' Xbin/acdc Xbin/antigenic Xbin/backtranseq Xbin/banana Xbin/chaos Xbin/checktrans Xbin/chips Xbin/cirdna Xbin/codcmp Xbin/complex Xbin/compseq Xbin/cpgplot Xbin/cpgreport Xbin/cusp Xbin/cutseq Xbin/dan Xbin/dbiblast Xbin/dbiflat Xbin/dbigcg Xbin/descseq Xbin/digest Xbin/dotmatcher Xbin/dottup Xbin/dreg Xbin/einverted Xbin/embossdata Xbin/emma Xbin/equicktandem Xbin/est2genome Xbin/etandem Xbin/extractseq Xbin/findkm Xbin/freak Xbin/fuzznuc Xbin/fuzzpro Xbin/fuzztran Xbin/garnier Xbin/geecee Xbin/getorf Xbin/helixturnhelix Xbin/iep Xbin/infoseq Xbin/isochore Xbin/lindna Xbin/maskfeat Xbin/maskseq Xbin/matcher Xbin/merger Xbin/msbar Xbin/needle Xbin/newcpgreport Xbin/newcpgseek Xbin/newseq Xbin/noreturn Xbin/nthseq Xbin/octanol Xbin/oddcomp Xbin/palindrome Xbin/pasteseq Xbin/patmatdb Xbin/patmatmotifs Xbin/pepcoil Xbin/pepinfo Xbin/pepnet Xbin/pepstats Xbin/pepwheel Xbin/pepwindow Xbin/pepwindowall Xbin/plotorf Xbin/polydot Xbin/preg Xbin/prettyplot Xbin/prettyseq Xbin/prima Xbin/printsextract Xbin/profit Xbin/prophecy Xbin/prophet Xbin/prosextract Xbin/pscan Xbin/rebaseextract Xbin/redata Xbin/remap Xbin/restrict Xbin/revseq Xbin/seealso Xbin/seqmatchall Xbin/seqret Xbin/seqretall Xbin/seqretset Xbin/seqretsplit Xbin/showdb Xbin/showfeat Xbin/showorf Xbin/showseq Xbin/shuffleseq Xbin/sigcleave Xbin/splitter Xbin/stretcher Xbin/stssearch Xbin/supermatcher Xbin/syco Xbin/textsearch Xbin/tfextract Xbin/tfscan Xbin/tmap Xbin/transeq Xbin/trimseq Xbin/water Xbin/wobble Xbin/wordcount Xbin/wordmatch Xbin/wossname Xlib/libplplot.so.4 Xlib/libplplot.so Xlib/libplplot.a Xlib/libajax.so.1 Xlib/libajax.so Xlib/libajax.a Xlib/libajaxg.so.1 Xlib/libajaxg.so Xlib/libajaxg.a Xlib/libnucleus.so.1 Xlib/libnucleus.so Xlib/libnucleus.a Xshare/EMBOSS/plstnd5.fnt Xshare/EMBOSS/plxtnd5.fnt Xshare/EMBOSS/acd/ajbad.acd Xshare/EMBOSS/acd/ajfeatest.acd Xshare/EMBOSS/acd/ajtest.acd Xshare/EMBOSS/acd/ajtest2.acd Xshare/EMBOSS/acd/cluster.acd Xshare/EMBOSS/acd/demofeatures.acd Xshare/EMBOSS/acd/demolist.acd Xshare/EMBOSS/acd/demosequence.acd Xshare/EMBOSS/acd/demostring.acd Xshare/EMBOSS/acd/demotable.acd Xshare/EMBOSS/acd/entrails.acd Xshare/EMBOSS/acd/histogramtest.acd Xshare/EMBOSS/acd/patmattest.acd Xshare/EMBOSS/acd/plplottest.acd Xshare/EMBOSS/acd/proteinmotifsearch.acd Xshare/EMBOSS/acd/seqinfo.acd Xshare/EMBOSS/acd/seqretallfeat.acd Xshare/EMBOSS/acd/seqretfeat.acd Xshare/EMBOSS/acd/seqtofeat.acd Xshare/EMBOSS/acd/simplesw.acd Xshare/EMBOSS/acd/testplot.acd Xshare/EMBOSS/acd/treetypedisplay.acd Xshare/EMBOSS/acd/antigenic.acd Xshare/EMBOSS/acd/backtranseq.acd Xshare/EMBOSS/acd/banana.acd Xshare/EMBOSS/acd/chaos.acd Xshare/EMBOSS/acd/checktrans.acd Xshare/EMBOSS/acd/chips.acd Xshare/EMBOSS/acd/cirdna.acd Xshare/EMBOSS/acd/codcmp.acd Xshare/EMBOSS/acd/complex.acd Xshare/EMBOSS/acd/compseq.acd Xshare/EMBOSS/acd/cpgplot.acd Xshare/EMBOSS/acd/cpgreport.acd Xshare/EMBOSS/acd/cusp.acd Xshare/EMBOSS/acd/cutseq.acd Xshare/EMBOSS/acd/dan.acd Xshare/EMBOSS/acd/dbiblast.acd Xshare/EMBOSS/acd/dbiflat.acd Xshare/EMBOSS/acd/dbigcg.acd Xshare/EMBOSS/acd/descseq.acd Xshare/EMBOSS/acd/digest.acd Xshare/EMBOSS/acd/dotmatcher.acd Xshare/EMBOSS/acd/dottup.acd Xshare/EMBOSS/acd/dreg.acd Xshare/EMBOSS/acd/einverted.acd Xshare/EMBOSS/acd/embossdata.acd Xshare/EMBOSS/acd/emma.acd Xshare/EMBOSS/acd/equicktandem.acd Xshare/EMBOSS/acd/est2genome.acd Xshare/EMBOSS/acd/etandem.acd Xshare/EMBOSS/acd/extractseq.acd Xshare/EMBOSS/acd/findkm.acd Xshare/EMBOSS/acd/freak.acd Xshare/EMBOSS/acd/fuzznuc.acd Xshare/EMBOSS/acd/fuzzpro.acd Xshare/EMBOSS/acd/fuzztran.acd Xshare/EMBOSS/acd/garnier.acd Xshare/EMBOSS/acd/geecee.acd Xshare/EMBOSS/acd/getorf.acd Xshare/EMBOSS/acd/helixturnhelix.acd Xshare/EMBOSS/acd/iep.acd Xshare/EMBOSS/acd/infoseq.acd Xshare/EMBOSS/acd/isochore.acd Xshare/EMBOSS/acd/lindna.acd Xshare/EMBOSS/acd/maskfeat.acd Xshare/EMBOSS/acd/maskseq.acd Xshare/EMBOSS/acd/matcher.acd Xshare/EMBOSS/acd/merger.acd Xshare/EMBOSS/acd/msbar.acd Xshare/EMBOSS/acd/needle.acd Xshare/EMBOSS/acd/newcpgreport.acd Xshare/EMBOSS/acd/newcpgseek.acd Xshare/EMBOSS/acd/newseq.acd Xshare/EMBOSS/acd/noreturn.acd Xshare/EMBOSS/acd/nthseq.acd Xshare/EMBOSS/acd/octanol.acd Xshare/EMBOSS/acd/oddcomp.acd Xshare/EMBOSS/acd/palindrome.acd Xshare/EMBOSS/acd/pasteseq.acd Xshare/EMBOSS/acd/patmatdb.acd Xshare/EMBOSS/acd/patmatmotifs.acd Xshare/EMBOSS/acd/pepcoil.acd Xshare/EMBOSS/acd/pepinfo.acd Xshare/EMBOSS/acd/pepnet.acd Xshare/EMBOSS/acd/pepstats.acd Xshare/EMBOSS/acd/pepwheel.acd Xshare/EMBOSS/acd/pepwindow.acd Xshare/EMBOSS/acd/pepwindowall.acd Xshare/EMBOSS/acd/plotorf.acd Xshare/EMBOSS/acd/polydot.acd Xshare/EMBOSS/acd/preg.acd Xshare/EMBOSS/acd/prettyplot.acd Xshare/EMBOSS/acd/prettyseq.acd Xshare/EMBOSS/acd/prima.acd Xshare/EMBOSS/acd/printsextract.acd Xshare/EMBOSS/acd/profit.acd Xshare/EMBOSS/acd/prophecy.acd Xshare/EMBOSS/acd/prophet.acd Xshare/EMBOSS/acd/prosextract.acd Xshare/EMBOSS/acd/pscan.acd Xshare/EMBOSS/acd/rebaseextract.acd Xshare/EMBOSS/acd/redata.acd Xshare/EMBOSS/acd/remap.acd Xshare/EMBOSS/acd/restrict.acd Xshare/EMBOSS/acd/revseq.acd Xshare/EMBOSS/acd/seqmatchall.acd Xshare/EMBOSS/acd/seqret.acd Xshare/EMBOSS/acd/seqretall.acd Xshare/EMBOSS/acd/seqretset.acd Xshare/EMBOSS/acd/seqretsplit.acd Xshare/EMBOSS/acd/showdb.acd Xshare/EMBOSS/acd/seqrettype.acd Xshare/EMBOSS/acd/showfeat.acd Xshare/EMBOSS/acd/showorf.acd Xshare/EMBOSS/acd/showseq.acd Xshare/EMBOSS/acd/shuffleseq.acd Xshare/EMBOSS/acd/sigcleave.acd Xshare/EMBOSS/acd/splitter.acd Xshare/EMBOSS/acd/stretcher.acd Xshare/EMBOSS/acd/stssearch.acd Xshare/EMBOSS/acd/supermatcher.acd Xshare/EMBOSS/acd/syco.acd Xshare/EMBOSS/acd/textsearch.acd Xshare/EMBOSS/acd/tfextract.acd Xshare/EMBOSS/acd/tfscan.acd Xshare/EMBOSS/acd/tmap.acd Xshare/EMBOSS/acd/transeq.acd Xshare/EMBOSS/acd/trimseq.acd Xshare/EMBOSS/acd/water.acd Xshare/EMBOSS/acd/wobble.acd Xshare/EMBOSS/acd/wordcount.acd Xshare/EMBOSS/acd/wordmatch.acd Xshare/EMBOSS/acd/wossname.acd Xshare/EMBOSS/acd/codes.english Xshare/EMBOSS/data/CODONS/Eacc.cut Xshare/EMBOSS/data/CODONS/Eadenovirus5.cut Xshare/EMBOSS/data/CODONS/Eadenovirus7.cut Xshare/EMBOSS/data/CODONS/Eaidlav.cut Xshare/EMBOSS/data/CODONS/Eanasp.cut Xshare/EMBOSS/data/CODONS/Eani.cut Xshare/EMBOSS/data/CODONS/Eani_h.cut Xshare/EMBOSS/data/CODONS/Eanidmit.cut Xshare/EMBOSS/data/CODONS/Easn.cut Xshare/EMBOSS/data/CODONS/Eath.cut Xshare/EMBOSS/data/CODONS/Eatu.cut Xshare/EMBOSS/data/CODONS/Eavi.cut Xshare/EMBOSS/data/CODONS/Ebja.cut Xshare/EMBOSS/data/CODONS/Ebly.cut Xshare/EMBOSS/data/CODONS/Ebme.cut Xshare/EMBOSS/data/CODONS/Ebmo.cut Xshare/EMBOSS/data/CODONS/Ebna.cut Xshare/EMBOSS/data/CODONS/Ebov.cut Xshare/EMBOSS/data/CODONS/Ebovsp.cut Xshare/EMBOSS/data/CODONS/Ebst.cut Xshare/EMBOSS/data/CODONS/Ebsu.cut Xshare/EMBOSS/data/CODONS/Ebsu_h.cut Xshare/EMBOSS/data/CODONS/Ecac.cut Xshare/EMBOSS/data/CODONS/Ecal.cut Xshare/EMBOSS/data/CODONS/Eccr.cut Xshare/EMBOSS/data/CODONS/Ecel.cut Xshare/EMBOSS/data/CODONS/Echi.cut Xshare/EMBOSS/data/CODONS/Echicken.cut Xshare/EMBOSS/data/CODONS/Echisp.cut Xshare/EMBOSS/data/CODONS/Echk.cut Xshare/EMBOSS/data/CODONS/Echmp.cut Xshare/EMBOSS/data/CODONS/Echnt.cut Xshare/EMBOSS/data/CODONS/Echos.cut Xshare/EMBOSS/data/CODONS/Echzm.cut Xshare/EMBOSS/data/CODONS/Echzmrubp.cut Xshare/EMBOSS/data/CODONS/Ecpx.cut Xshare/EMBOSS/data/CODONS/Ecre.cut Xshare/EMBOSS/data/CODONS/Ecrisp.cut Xshare/EMBOSS/data/CODONS/Ectr.cut Xshare/EMBOSS/data/CODONS/Edayhoff.cut Xshare/EMBOSS/data/CODONS/Eddi.cut Xshare/EMBOSS/data/CODONS/Eddi_h.cut Xshare/EMBOSS/data/CODONS/Edog.cut Xshare/EMBOSS/data/CODONS/Edro.cut Xshare/EMBOSS/data/CODONS/Edro_h.cut Xshare/EMBOSS/data/CODONS/Edrosophila.cut Xshare/EMBOSS/data/CODONS/Eeca.cut Xshare/EMBOSS/data/CODONS/Ef1.cut Xshare/EMBOSS/data/CODONS/Eeco.cut Xshare/EMBOSS/data/CODONS/Eeco_h.cut Xshare/EMBOSS/data/CODONS/Eecoli.cut Xshare/EMBOSS/data/CODONS/Efish.cut Xshare/EMBOSS/data/CODONS/Efmdvpolyp.cut Xshare/EMBOSS/data/CODONS/Eham.cut Xshare/EMBOSS/data/CODONS/Ehha.cut Xshare/EMBOSS/data/CODONS/Ehin.cut Xshare/EMBOSS/data/CODONS/Ehma.cut Xshare/EMBOSS/data/CODONS/Ehum.cut Xshare/EMBOSS/data/CODONS/Ehuman.cut Xshare/EMBOSS/data/CODONS/Ekla.cut Xshare/EMBOSS/data/CODONS/Ekpn.cut Xshare/EMBOSS/data/CODONS/Ella.cut Xshare/EMBOSS/data/CODONS/Emac.cut Xshare/EMBOSS/data/CODONS/Emaize.cut Xshare/EMBOSS/data/CODONS/Emam_h.cut Xshare/EMBOSS/data/CODONS/Emixlg.cut Xshare/EMBOSS/data/CODONS/Emouse.cut Xshare/EMBOSS/data/CODONS/Emsa.cut Xshare/EMBOSS/data/CODONS/Emse.cut Xshare/EMBOSS/data/CODONS/Emta.cut Xshare/EMBOSS/data/CODONS/Emtu.cut Xshare/EMBOSS/data/CODONS/Emus.cut Xshare/EMBOSS/data/CODONS/Emussp.cut Xshare/EMBOSS/data/CODONS/Emva.cut Xshare/EMBOSS/data/CODONS/Emze.cut Xshare/EMBOSS/data/CODONS/Emzecp.cut Xshare/EMBOSS/data/CODONS/Encr.cut Xshare/EMBOSS/data/CODONS/Eneu.cut Xshare/EMBOSS/data/CODONS/Engo.cut Xshare/EMBOSS/data/CODONS/Eoncsp.cut Xshare/EMBOSS/data/CODONS/Epae.cut Xshare/EMBOSS/data/CODONS/Epea.cut Xshare/EMBOSS/data/CODONS/Epet.cut Xshare/EMBOSS/data/CODONS/Epfa.cut Xshare/EMBOSS/data/CODONS/Ephix174.cut Xshare/EMBOSS/data/CODONS/Ephv.cut Xshare/EMBOSS/data/CODONS/Ephy.cut Xshare/EMBOSS/data/CODONS/Epig.cut Xshare/EMBOSS/data/CODONS/Epolyomaa2.cut Xshare/EMBOSS/data/CODONS/Epombe.cut Xshare/EMBOSS/data/CODONS/Epombecai.cut Xshare/EMBOSS/data/CODONS/Epot.cut Xshare/EMBOSS/data/CODONS/Eppu.cut Xshare/EMBOSS/data/CODONS/Epse.cut Xshare/EMBOSS/data/CODONS/Epsy.cut Xshare/EMBOSS/data/CODONS/Epvu.cut Xshare/EMBOSS/data/CODONS/Erab.cut Xshare/EMBOSS/data/CODONS/Erabbit.cut Xshare/EMBOSS/data/CODONS/Erabsp.cut Xshare/EMBOSS/data/CODONS/Erat.cut Xshare/EMBOSS/data/CODONS/Eratsp.cut Xshare/EMBOSS/data/CODONS/Erca.cut Xshare/EMBOSS/data/CODONS/Erhm.cut Xshare/EMBOSS/data/CODONS/Eric.cut Xshare/EMBOSS/data/CODONS/Erle.cut Xshare/EMBOSS/data/CODONS/Erme.cut Xshare/EMBOSS/data/CODONS/Ersp.cut Xshare/EMBOSS/data/CODONS/Esalsp.cut Xshare/EMBOSS/data/CODONS/Esau.cut Xshare/EMBOSS/data/CODONS/Esco.cut Xshare/EMBOSS/data/CODONS/Esgi.cut Xshare/EMBOSS/data/CODONS/Eshp.cut Xshare/EMBOSS/data/CODONS/Eshpsp.cut Xshare/EMBOSS/data/CODONS/Esli.cut Xshare/EMBOSS/data/CODONS/Eslm.cut Xshare/EMBOSS/data/CODONS/Esma.cut Xshare/EMBOSS/data/CODONS/Esmi.cut Xshare/EMBOSS/data/CODONS/Esmu.cut Xshare/EMBOSS/data/CODONS/Esoy.cut Xshare/EMBOSS/data/CODONS/Espi.cut Xshare/EMBOSS/data/CODONS/Espn.cut Xshare/EMBOSS/data/CODONS/Espo.cut Xshare/EMBOSS/data/CODONS/Espo_h.cut Xshare/EMBOSS/data/CODONS/Espu.cut Xshare/EMBOSS/data/CODONS/Esta.cut Xshare/EMBOSS/data/CODONS/Esty.cut Xshare/EMBOSS/data/CODONS/Esus.cut Xshare/EMBOSS/data/CODONS/Esv40.cut Xshare/EMBOSS/data/CODONS/Esyhsp.cut Xshare/EMBOSS/data/CODONS/Esynsp.cut Xshare/EMBOSS/data/CODONS/Etbr.cut Xshare/EMBOSS/data/CODONS/Etcr.cut Xshare/EMBOSS/data/CODONS/Eter.cut Xshare/EMBOSS/data/CODONS/Etetsp.cut Xshare/EMBOSS/data/CODONS/Etob.cut Xshare/EMBOSS/data/CODONS/Etobcp.cut Xshare/EMBOSS/data/CODONS/Etom.cut Xshare/EMBOSS/data/CODONS/Etrb.cut Xshare/EMBOSS/data/CODONS/Evco.cut Xshare/EMBOSS/data/CODONS/Ewht.cut Xshare/EMBOSS/data/CODONS/Exel.cut Xshare/EMBOSS/data/CODONS/Exenopus.cut Xshare/EMBOSS/data/CODONS/Eyeast.cut Xshare/EMBOSS/data/CODONS/Eyeastcai.cut Xshare/EMBOSS/data/CODONS/Eyen.cut Xshare/EMBOSS/data/CODONS/Eysc.cut Xshare/EMBOSS/data/CODONS/Eysc_h.cut Xshare/EMBOSS/data/CODONS/Eyscmt.cut Xshare/EMBOSS/data/CODONS/Eysp.cut Xshare/EMBOSS/data/CODONS/Ezebrafish.cut Xshare/EMBOSS/data/CODONS/Ezma.cut Xshare/EMBOSS/data/CODONS/Makefile Xshare/EMBOSS/data/CODONS/Makefile.am Xshare/EMBOSS/data/CODONS/Makefile.in Xshare/EMBOSS/data/REBASE/dummyfile Xshare/EMBOSS/data/PRINTS/dummyfile Xshare/EMBOSS/data/PROSITE/dummyfile Xshare/EMBOSS/data/EBLOSUM30 Xshare/EMBOSS/data/EBLOSUM35 Xshare/EMBOSS/data/EBLOSUM40 Xshare/EMBOSS/data/EBLOSUM45 Xshare/EMBOSS/data/EBLOSUM50 Xshare/EMBOSS/data/EBLOSUM55 Xshare/EMBOSS/data/EBLOSUM60 Xshare/EMBOSS/data/EBLOSUM62 Xshare/EMBOSS/data/EBLOSUM62-12 Xshare/EMBOSS/data/EBLOSUM65 Xshare/EMBOSS/data/EBLOSUM70 Xshare/EMBOSS/data/EBLOSUM75 Xshare/EMBOSS/data/EBLOSUM80 Xshare/EMBOSS/data/EBLOSUM85 Xshare/EMBOSS/data/EBLOSUM90 Xshare/EMBOSS/data/EBLOSUMN Xshare/EMBOSS/data/EDNAFULL Xshare/EMBOSS/data/EDNAMAT Xshare/EMBOSS/data/EGC.0 Xshare/EMBOSS/data/EGC.1 Xshare/EMBOSS/data/EGC.10 Xshare/EMBOSS/data/EGC.11 Xshare/EMBOSS/data/EGC.12 Xshare/EMBOSS/data/EGC.13 Xshare/EMBOSS/data/EGC.14 Xshare/EMBOSS/data/EGC.15 Xshare/EMBOSS/data/EGC.2 Xshare/EMBOSS/data/EGC.3 Xshare/EMBOSS/data/EGC.4 Xshare/EMBOSS/data/EGC.5 Xshare/EMBOSS/data/EGC.6 Xshare/EMBOSS/data/EGC.9 Xshare/EMBOSS/data/ENUC.4.2 Xshare/EMBOSS/data/ENUC.4.4 Xshare/EMBOSS/data/EPAM10 Xshare/EMBOSS/data/EPAM100 Xshare/EMBOSS/data/EPAM110 Xshare/EMBOSS/data/EPAM120 Xshare/EMBOSS/data/EPAM130 Xshare/EMBOSS/data/EPAM140 Xshare/EMBOSS/data/EPAM150 Xshare/EMBOSS/data/EPAM160 Xshare/EMBOSS/data/EPAM170 Xshare/EMBOSS/data/EPAM180 Xshare/EMBOSS/data/EPAM190 Xshare/EMBOSS/data/EPAM20 Xshare/EMBOSS/data/EPAM200 Xshare/EMBOSS/data/EPAM210 Xshare/EMBOSS/data/EPAM220 Xshare/EMBOSS/data/EPAM230 Xshare/EMBOSS/data/EPAM240 Xshare/EMBOSS/data/EPAM250 Xshare/EMBOSS/data/EPAM260 Xshare/EMBOSS/data/EPAM270 Xshare/EMBOSS/data/EPAM280 Xshare/EMBOSS/data/EPAM290 Xshare/EMBOSS/data/EPAM30 Xshare/EMBOSS/data/EPAM300 Xshare/EMBOSS/data/EPAM310 Xshare/EMBOSS/data/EPAM320 Xshare/EMBOSS/data/EPAM330 Xshare/EMBOSS/data/EPAM340 Xshare/EMBOSS/data/EPAM350 Xshare/EMBOSS/data/EPAM360 Xshare/EMBOSS/data/EPAM370 Xshare/EMBOSS/data/EPAM380 Xshare/EMBOSS/data/EPAM390 Xshare/EMBOSS/data/EPAM40 Xshare/EMBOSS/data/EPAM400 Xshare/EMBOSS/data/EPAM410 Xshare/EMBOSS/data/EPAM420 Xshare/EMBOSS/data/EPAM430 Xshare/EMBOSS/data/EPAM440 Xshare/EMBOSS/data/EPAM450 Xshare/EMBOSS/data/EPAM460 Xshare/EMBOSS/data/EPAM470 Xshare/EMBOSS/data/EPAM480 Xshare/EMBOSS/data/EPAM490 Xshare/EMBOSS/data/EPAM50 Xshare/EMBOSS/data/EPAM500 Xshare/EMBOSS/data/EPAM60 Xshare/EMBOSS/data/EPAM70 Xshare/EMBOSS/data/EPAM80 Xshare/EMBOSS/data/EPAM90 Xshare/EMBOSS/data/Epk.dat Xshare/EMBOSS/data/Eaa_acc_surface.dat Xshare/EMBOSS/data/Eaa_hydropathy.dat Xshare/EMBOSS/data/Eaa_properties.dat Xshare/EMBOSS/data/Eamino.dat Xshare/EMBOSS/data/Eangles_tri.dat Xshare/EMBOSS/data/Eantigenic.dat Xshare/EMBOSS/data/Ebases.iub Xshare/EMBOSS/data/Edayhoff.freq Xshare/EMBOSS/data/Edna.melt Xshare/EMBOSS/data/Efeatures.embl Xshare/EMBOSS/data/Efeatures.gff Xshare/EMBOSS/data/Ehth.dat Xshare/EMBOSS/data/Ehth87.dat Xshare/EMBOSS/data/Enakai.dat Xshare/EMBOSS/data/Epepcoil.dat Xshare/EMBOSS/data/Epprofile Xshare/EMBOSS/data/Erna.melt Xshare/EMBOSS/data/Esig.euk Xshare/EMBOSS/data/Esig.pro Xshare/EMBOSS/data/Etags.embl Xshare/EMBOSS/data/Etags.gff Xshare/EMBOSS/data/Ewhite-wimley.dat Xshare/EMBOSS/data/Makefile Xshare/EMBOSS/data/Makefile.am Xshare/EMBOSS/data/Makefile.in Xshare/EMBOSS/data/embossre.equ Xshare/EMBOSS/test/data/Makefile Xshare/EMBOSS/test/data/Makefile.am Xshare/EMBOSS/test/data/Makefile.in Xshare/EMBOSS/test/data/dna.acedb Xshare/EMBOSS/test/data/dna.aln Xshare/EMBOSS/test/data/dna.asn1 Xshare/EMBOSS/test/data/dna.codata Xshare/EMBOSS/test/data/dna.embl Xshare/EMBOSS/test/data/dna.fasta Xshare/EMBOSS/test/data/dna.fitch Xshare/EMBOSS/test/data/dna.gcg Xshare/EMBOSS/test/data/dna.gcg8 Xshare/EMBOSS/test/data/dna.genbank Xshare/EMBOSS/test/data/dna.ig Xshare/EMBOSS/test/data/dna.m-acedb Xshare/EMBOSS/test/data/dna.m-codata Xshare/EMBOSS/test/data/dna.m-embl Xshare/EMBOSS/test/data/dna.m-fasta Xshare/EMBOSS/test/data/dna.m-fasta-long Xshare/EMBOSS/test/data/dna.m-ncbi Xshare/EMBOSS/test/data/dna.m-strider Xshare/EMBOSS/test/data/dna.msf Xshare/EMBOSS/test/data/dna.msf8 Xshare/EMBOSS/test/data/dna.ncbi Xshare/EMBOSS/test/data/dna.phylip Xshare/EMBOSS/test/data/dna.phylip3 Xshare/EMBOSS/test/data/dna.staden Xshare/EMBOSS/test/data/dna.strider Xshare/EMBOSS/test/data/dna.text Xshare/EMBOSS/test/data/prot.acedb Xshare/EMBOSS/test/data/prot.codata Xshare/EMBOSS/test/data/prot.fasta Xshare/EMBOSS/test/data/prot.gcg Xshare/EMBOSS/test/data/prot.gcg8 Xshare/EMBOSS/test/data/prot.ig Xshare/EMBOSS/test/data/prot.m-acedb Xshare/EMBOSS/test/data/prot.m-codata Xshare/EMBOSS/test/data/prot.m-fasta Xshare/EMBOSS/test/data/prot.m-nbrf Xshare/EMBOSS/test/data/prot.m-ncbi Xshare/EMBOSS/test/data/prot.m-swiss Xshare/EMBOSS/test/data/prot.nbrf Xshare/EMBOSS/test/data/prot.ncbi Xshare/EMBOSS/test/data/prot.swiss Xshare/EMBOSS/test/data/prot.text Xshare/EMBOSS/test/embl/Makefile Xshare/EMBOSS/test/embl/Makefile.am Xshare/EMBOSS/test/embl/Makefile.in Xshare/EMBOSS/test/embl/acnum.hit Xshare/EMBOSS/test/embl/acnum.trg Xshare/EMBOSS/test/embl/division.lkp Xshare/EMBOSS/test/embl/entrynam.idx Xshare/EMBOSS/test/embl/est.dat Xshare/EMBOSS/test/embl/hum1.dat Xshare/EMBOSS/test/embl/inv.dat Xshare/EMBOSS/test/embl/pro.dat Xshare/EMBOSS/test/embl/rod.dat Xshare/EMBOSS/test/embl/vrl.dat Xshare/EMBOSS/test/embl/vrt.dat Xshare/EMBOSS/test/pir/Makefile Xshare/EMBOSS/test/pir/Makefile.am Xshare/EMBOSS/test/pir/Makefile.in Xshare/EMBOSS/test/pir/pir1.header Xshare/EMBOSS/test/pir/pir1.names Xshare/EMBOSS/test/pir/pir1.numbers Xshare/EMBOSS/test/pir/pir1.offset Xshare/EMBOSS/test/pir/pir1.ref Xshare/EMBOSS/test/pir/pir1.seq Xshare/EMBOSS/test/pir/pir2.header Xshare/EMBOSS/test/pir/pir2.names Xshare/EMBOSS/test/pir/pir2.numbers Xshare/EMBOSS/test/pir/pir2.offset Xshare/EMBOSS/test/pir/pir2.ref Xshare/EMBOSS/test/pir/pir2.seq Xshare/EMBOSS/test/pir/pir3.header Xshare/EMBOSS/test/pir/pir3.names Xshare/EMBOSS/test/pir/pir3.numbers Xshare/EMBOSS/test/pir/pir3.offset Xshare/EMBOSS/test/pir/pir3.ref Xshare/EMBOSS/test/pir/pir3.seq Xshare/EMBOSS/test/pir/pir4.header Xshare/EMBOSS/test/pir/pir4.names Xshare/EMBOSS/test/pir/pir4.numbers Xshare/EMBOSS/test/pir/pir4.offset Xshare/EMBOSS/test/pir/pir4.ref Xshare/EMBOSS/test/pir/pir4.seq Xshare/EMBOSS/test/swiss/Makefile Xshare/EMBOSS/test/swiss/Makefile.am Xshare/EMBOSS/test/swiss/Makefile.in Xshare/EMBOSS/test/swiss/acnum.hit Xshare/EMBOSS/test/swiss/acnum.trg Xshare/EMBOSS/test/swiss/division.lkp Xshare/EMBOSS/test/swiss/entrynam.idx Xshare/EMBOSS/test/swiss/seq.dat Xshare/EMBOSS/test/swnew/Makefile Xshare/EMBOSS/test/swnew/Makefile.am Xshare/EMBOSS/test/swnew/Makefile.in Xshare/EMBOSS/test/swnew/acnum.hit Xshare/EMBOSS/test/swnew/acnum.trg Xshare/EMBOSS/test/swnew/division.lkp Xshare/EMBOSS/test/swnew/entrynam.idx Xshare/EMBOSS/test/swnew/new_seq.dat Xshare/EMBOSS/test/swnew/upd_ann.dat Xshare/EMBOSS/test/swnew/upd_seq.dat Xshare/EMBOSS/test/wormpep/Makefile Xshare/EMBOSS/test/wormpep/Makefile.am Xshare/EMBOSS/test/wormpep/Makefile.in Xshare/EMBOSS/test/wormpep/acnum.hit Xshare/EMBOSS/test/wormpep/acnum.trg Xshare/EMBOSS/test/wormpep/division.lkp Xshare/EMBOSS/test/wormpep/entrynam.idx Xshare/EMBOSS/test/wormpep/wormpep X@dirrm share/EMBOSS/data/CODONS X@dirrm share/EMBOSS/data/REBASE X@dirrm share/EMBOSS/data/PRINTS X@dirrm share/EMBOSS/data/PROSITE X@dirrm share/EMBOSS/data X@dirrm share/EMBOSS/acd X@dirrm share/EMBOSS/test/data X@dirrm share/EMBOSS/test/embl X@dirrm share/EMBOSS/test/pir X@dirrm share/EMBOSS/test/swiss X@dirrm share/EMBOSS/test/swnew X@dirrm share/EMBOSS/test/wormpep X@dirrm share/EMBOSS/test X@dirrm share/EMBOSS END-of-emboss/pkg/PLIST echo x - emboss/pkg/DESCR sed 's/^X//' >emboss/pkg/DESCR << 'END-of-emboss/pkg/DESCR' XThe European Molecular Biology Open Software Suite (EMBOSS) is a Xcomprehensive set (about 100) of open source tools for genetic sequence Xanalysis. EMBOSS is produced by the European Molecular Biology Network X(EMBnet - http://www.embnet.org/). X XAll EMBOSS tools are all built around the same set of core libraries - AJAX Xand NUCLEUS - and therefore share a unified user interface and a uniform Xsequence addressing methodology. X XThe various components of EMBOSS are distributed under the GPL, except the Xcore libraries which are under the LGPL. X XWWW: http://www.uk.embnet.org/Software/EMBOSS/ X X-- Johann Visagie <johann@egenetics.com> END-of-emboss/pkg/DESCR echo x - emboss/pkg/COMMENT sed 's/^X//' >emboss/pkg/COMMENT << 'END-of-emboss/pkg/COMMENT' XA collection of open source tools for genetic sequence analysis END-of-emboss/pkg/COMMENT echo x - emboss/Makefile sed 's/^X//' >emboss/Makefile << 'END-of-emboss/Makefile' X# New ports collection makefile for: emboss X# Date created: 31 July 2000 X# Whom: Johann Visagie <johann@egenetics.com> X# X# $FreeBSD$ X# X XPORTNAME= emboss XPORTVERSION= 1.0.0 XCATEGORIES= biology XMASTER_SITES= ftp://ftp.uk.embnet.org/pub/EMBOSS/ XDISTNAME= EMBOSS-${PORTVERSION} X XMAINTAINER= johann@egenetics.com X XLIB_DEPENDS= gd.1:${PORTSDIR}/graphics/gd \ X png.4:${PORTSDIR}/graphics/png X XUSE_GMAKE= yes XGNU_CONFIGURE= yes XUSE_LIBTOOL= yes X XCONFIGURE_ENV= CPPFLAGS="-I${LOCALBASE}/include/gd" \ X LIBS="-L${LOCALBASE}/lib" X X.include <bsd.port.mk> END-of-emboss/Makefile echo c - emboss/files mkdir -p emboss/files > /dev/null 2>&1 echo x - emboss/files/md5 sed 's/^X//' >emboss/files/md5 << 'END-of-emboss/files/md5' XMD5 (EMBOSS-1.0.0.tar.gz) = 7b8e7bebdef3adfb6fe45a2d346318fb END-of-emboss/files/md5 exit >Release-Note: >Audit-Trail: >Unformatted: To Unsubscribe: send mail to majordomo@FreeBSD.org with "unsubscribe freebsd-ports" in the body of the message
Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?E13JHbJ-0006He-00>