Date: Sat, 24 Aug 2002 11:33:15 -0500 (CDT) From: Glenn Johnson <glennpj@charter.net> To: FreeBSD-gnats-submit@FreeBSD.org Subject: ports/41977: biology/pymol: fix broken build and install example scripts Message-ID: <200208241633.g7OGXFq7068658@gforce.johnson.home>
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>Number: 41977
>Category: ports
>Synopsis: biology/pymol: fix broken build and install example scripts
>Confidential: no
>Severity: serious
>Priority: medium
>Responsible: freebsd-ports
>State: open
>Quarter:
>Keywords:
>Date-Required:
>Class: update
>Submitter-Id: current-users
>Arrival-Date: Sat Aug 24 09:40:01 PDT 2002
>Closed-Date:
>Last-Modified:
>Originator: Glenn Johnson
>Release: FreeBSD 4.6-STABLE i386
>Organization:
>Environment:
System: FreeBSD gforce.johnson.home 4.6-STABLE FreeBSD 4.6-STABLE #0: Sat Aug 17 20:58:06 CDT 2002 root@gforce.johnson.home:/usr/obj/usr/src/sys/GFORCE i386
>Description:
This PR for biology/pymol fixes the build and adds some useful
example python scripts to the installation.
- Change ${WRKSRC} to ${PORTNAME}-${PORTVERSION} because the
current value of ${WRKSRC}=${PKGNAME} no longer works due to
the appending of the ${PORTREVISION} value.
- Correct the pmw dependency to check for
${PYTHON_SITELIBDIR}/Pmw rather than ${PYTHON_SITELIBDIR}/PMW.
- Add the example scripts, with the exception of the red-hat
spec files. These scripts are potentially useful and one is
necessary for the Compiled Graphics Object demo.
- Bump the PORTREVISION
>How-To-Repeat:
>Fix:
--- pymol.update begins here ---
diff -ruN pymol.orig/Makefile pymol/Makefile
--- pymol.orig/Makefile Sat Aug 24 10:13:40 2002
+++ pymol/Makefile Sat Aug 24 11:04:01 2002
@@ -6,7 +6,7 @@
PORTNAME= pymol
PORTVERSION= 0.82
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= biology python
MASTER_SITES= ${MASTER_SITE_SOURCEFORGE}
MASTER_SITE_SUBDIR= pymol
@@ -17,10 +17,10 @@
BUILD_DEPENDS= ${PYNUMERIC}
RUN_DEPENDS= ${PYNUMERIC} \
- ${PYTHON_SITELIBDIR}/PMW:${PORTSDIR}/x11-toolkits/pmw
+ ${PYTHON_SITELIBDIR}/Pmw:${PORTSDIR}/x11-toolkits/pmw
LIB_DEPENDS= glut.3:${PORTSDIR}/graphics/Mesa3
-WRKSRC= ${WRKDIR}/${PKGNAME}
+WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION}
USE_GMAKE= yes
USE_REINPLACE= yes
USE_PYTHON= yes
@@ -36,7 +36,7 @@
do-install:
@${INSTALL_SCRIPT} ${WRKSRC}/setup/pymol.com ${PREFIX}/bin/pymol
@${MKDIR} ${PREFIX}/share/pymol
- @${TAR} -C ${WRKSRC} -chf - modules test | \
+ @${TAR} -C ${WRKSRC} --exclude package -chf - examples modules test | \
${TAR} -xf - -C ${PREFIX}/share/pymol
@${PYTHON_CMD} ${PYTHON_LIBDIR}/compileall.py ${PREFIX}/share/pymol/modules
@${PYTHON_CMD} -O ${PYTHON_LIBDIR}/compileall.py ${PREFIX}/share/pymol/modules
diff -ruN pymol.orig/pkg-plist pymol/pkg-plist
--- pymol.orig/pkg-plist Sat Aug 24 10:13:40 2002
+++ pymol/pkg-plist Sat Aug 24 10:45:32 2002
@@ -1,4 +1,24 @@
bin/pymol
+share/pymol/examples/chempy/generate_amber.py
+share/pymol/examples/chempy/generate_mmff.py
+share/pymol/examples/cookbook/README
+share/pymol/examples/cookbook/contact.pml
+share/pymol/examples/cookbook/density.pml
+share/pymol/examples/cookbook/groel_es.pml
+share/pymol/examples/cookbook/packing.pml
+share/pymol/examples/cookbook/packsurf.pml
+share/pymol/examples/cookbook/ribosome.pml
+share/pymol/examples/devel/brick01.py
+share/pymol/examples/devel/cgo01.py
+share/pymol/examples/devel/cgo02.py
+share/pymol/examples/devel/cgo03.py
+share/pymol/examples/devel/cgo_3Dtext01.py
+share/pymol/examples/devel/cgo_label_hack.py
+share/pymol/examples/devel/gl01.py
+share/pymol/examples/devel/gl02.py
+share/pymol/examples/devel/gl03.py
+share/pymol/examples/devel/povray01.py
+share/pymol/examples/devel/start_pymol.py
share/pymol/modules/ExtensionClass.so
share/pymol/modules/_cmd.so
share/pymol/modules/_glu_nummodule.so
@@ -548,4 +568,8 @@
@dirrm share/pymol/modules/chempy/bmin
@dirrm share/pymol/modules/chempy
@dirrm share/pymol/modules
+@dirrm share/pymol/examples/devel
+@dirrm share/pymol/examples/cookbook
+@dirrm share/pymol/examples/chempy
+@dirrm share/pymol/examples
@dirrm share/pymol
--- pymol.update ends here ---
>Release-Note:
>Audit-Trail:
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