Date: Wed, 11 Dec 2013 14:43:51 +0000 (UTC) From: Baptiste Daroussin <bapt@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r336171 - in head/biology: crux embassy emboss iolib libsbml mopac ortep3 plink plinkseq protomol pymol seaview Message-ID: <201312111443.rBBEhpf7009673@svn.freebsd.org>
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Author: bapt Date: Wed Dec 11 14:43:51 2013 New Revision: 336171 URL: http://svnweb.freebsd.org/changeset/ports/336171 Log: In preparation for making libtool generate libraries with a sane name, fix all LIB_DEPENDS in biology Modified: head/biology/crux/Makefile head/biology/embassy/Makefile head/biology/emboss/Makefile head/biology/iolib/Makefile head/biology/libsbml/Makefile head/biology/mopac/Makefile head/biology/ortep3/Makefile head/biology/plink/Makefile head/biology/plinkseq/Makefile head/biology/protomol/Makefile head/biology/pymol/Makefile head/biology/seaview/Makefile Modified: head/biology/crux/Makefile ============================================================================== --- head/biology/crux/Makefile Wed Dec 11 14:42:44 2013 (r336170) +++ head/biology/crux/Makefile Wed Dec 11 14:43:51 2013 (r336171) @@ -31,7 +31,7 @@ USE_FORTRAN= yes .if ${PORT_OPTIONS:MSYS_LINALG} CONFIGURE_ARGS+= --enable-sys-linalg -LIB_DEPENDS+= atlas.2:${PORTSDIR}/math/atlas +LIB_DEPENDS+= libatlas.so:${PORTSDIR}/math/atlas .else CONFIGURE_ARGS+= --disable-sys-linalg .endif Modified: head/biology/embassy/Makefile ============================================================================== --- head/biology/embassy/Makefile Wed Dec 11 14:42:44 2013 (r336170) +++ head/biology/embassy/Makefile Wed Dec 11 14:43:51 2013 (r336171) @@ -11,7 +11,7 @@ DIST_SUBDIR= emboss MAINTAINER= wen@FreeBSD.org COMMENT= Collection of contributed EMBOSS applications -LIB_DEPENDS= nucleus.6:${PORTSDIR}/biology/emboss +LIB_DEPENDS= libnucleus.so:${PORTSDIR}/biology/emboss PREFIX?= ${LOCALBASE}/emboss NO_MTREE= yes Modified: head/biology/emboss/Makefile ============================================================================== --- head/biology/emboss/Makefile Wed Dec 11 14:42:44 2013 (r336170) +++ head/biology/emboss/Makefile Wed Dec 11 14:43:51 2013 (r336171) @@ -15,8 +15,8 @@ COMMENT= A collection of open source too BUILD_DEPENDS= clustalw:${PORTSDIR}/biology/clustalw \ primer3:${PORTSDIR}/biology/primer3 -LIB_DEPENDS= gd:${PORTSDIR}/graphics/gd \ - png15:${PORTSDIR}/graphics/png +LIB_DEPENDS= libgd.so:${PORTSDIR}/graphics/gd \ + libpng15.so:${PORTSDIR}/graphics/png CONFLICTS= qmail-ldap-[0-9]* digest-[0-9]* @@ -38,8 +38,8 @@ CONFIGURE_ARGS+= --with-docroot=${DOCSDI .if !defined(WITHOUT_X11) USE_XORG= x11 USES+= motif -LIB_DEPENDS+= gd:${PORTSDIR}/graphics/gd \ - png15:${PORTSDIR}/graphics/png +LIB_DEPENDS+= libgd.so:${PORTSDIR}/graphics/gd \ + libpng15.so:${PORTSDIR}/graphics/png .else CONFIGURE_ARGS+= --without-x .endif Modified: head/biology/iolib/Makefile ============================================================================== --- head/biology/iolib/Makefile Wed Dec 11 14:42:44 2013 (r336170) +++ head/biology/iolib/Makefile Wed Dec 11 14:43:51 2013 (r336171) @@ -13,7 +13,7 @@ COMMENT= General purpose trace file (and LICENSE= BSD -LIB_DEPENDS= curl:${PORTSDIR}/ftp/curl +LIB_DEPENDS= libcurl.so:${PORTSDIR}/ftp/curl USE_AUTOTOOLS= libtool:env GNU_CONFIGURE= yes Modified: head/biology/libsbml/Makefile ============================================================================== --- head/biology/libsbml/Makefile Wed Dec 11 14:42:44 2013 (r336170) +++ head/biology/libsbml/Makefile Wed Dec 11 14:43:51 2013 (r336171) @@ -11,7 +11,7 @@ DISTNAME= ${PORTNAME}-${PORTVERSION}-src MAINTAINER= wen@FreeBSD.org COMMENT= API Library for Working with SBML File -LIB_DEPENDS= xml2.5:${PORTSDIR}/textproc/libxml2 +LIB_DEPENDS= libxml2.so:${PORTSDIR}/textproc/libxml2 OPTIONS_DEFINE= PYTHON RUBY Modified: head/biology/mopac/Makefile ============================================================================== --- head/biology/mopac/Makefile Wed Dec 11 14:42:44 2013 (r336170) +++ head/biology/mopac/Makefile Wed Dec 11 14:43:51 2013 (r336171) @@ -12,7 +12,7 @@ DISTNAME= ${PORTNAME}7-${MOPAC_SUBVERSIO MAINTAINER= ports@FreeBSD.org COMMENT= Semi-empirical (MNDO, etc.) molecular orbital calculation -LIB_DEPENDS= f2c:${PORTSDIR}/lang/f2c +LIB_DEPENDS= libf2c.so:${PORTSDIR}/lang/f2c USE_GMAKE= yes USE_AUTOTOOLS= aclocal automake autoconf libtool Modified: head/biology/ortep3/Makefile ============================================================================== --- head/biology/ortep3/Makefile Wed Dec 11 14:42:44 2013 (r336170) +++ head/biology/ortep3/Makefile Wed Dec 11 14:43:51 2013 (r336171) @@ -13,7 +13,7 @@ EXTRACT_ONLY= ortep.tar.Z MAINTAINER= ports@FreeBSD.org COMMENT= Oak Ridge Thermal Ellipsoid Plot Program for Crystal Structure -PGPLOT_LIB_DEPENDS= pgplot:${PORTSDIR}/graphics/pgplot +PGPLOT_LIB_DEPENDS= libpgplot.so:${PORTSDIR}/graphics/pgplot USE_FORTRAN= yes WRKSRC= ${WRKDIR}/ortep/src Modified: head/biology/plink/Makefile ============================================================================== --- head/biology/plink/Makefile Wed Dec 11 14:42:44 2013 (r336170) +++ head/biology/plink/Makefile Wed Dec 11 14:43:51 2013 (r336171) @@ -13,7 +13,7 @@ COMMENT= Whole genome association analys LICENSE= GPLv2 -LIB_DEPENDS= lapack:${PORTSDIR}/math/lapack +LIB_DEPENDS= liblapack.so:${PORTSDIR}/math/lapack USE_ZIP= yes USE_GMAKE= yes Modified: head/biology/plinkseq/Makefile ============================================================================== --- head/biology/plinkseq/Makefile Wed Dec 11 14:42:44 2013 (r336170) +++ head/biology/plinkseq/Makefile Wed Dec 11 14:43:51 2013 (r336171) @@ -12,7 +12,7 @@ COMMENT= Toolset for working with human LICENSE= GPLv2 -LIB_DEPENDS= protobuf:${PORTSDIR}/devel/protobuf +LIB_DEPENDS= libprotobuf.so:${PORTSDIR}/devel/protobuf USE_DOS2UNIX= yes USE_LDCONFIG= yes Modified: head/biology/protomol/Makefile ============================================================================== --- head/biology/protomol/Makefile Wed Dec 11 14:42:44 2013 (r336170) +++ head/biology/protomol/Makefile Wed Dec 11 14:43:51 2013 (r336171) @@ -12,9 +12,9 @@ EXTRACT_SUFX= # empty MAINTAINER= sangwoos@gmail.com COMMENT= OO, component based, framework for molecular dynamics (MD) simulations -LIB_DEPENDS= png15:${PORTSDIR}/graphics/png \ - jpeg.11:${PORTSDIR}/graphics/jpeg \ - tiff.4:${PORTSDIR}/graphics/tiff +LIB_DEPENDS= libpng15.so:${PORTSDIR}/graphics/png \ + libjpeg.so:${PORTSDIR}/graphics/jpeg \ + libtiff.so:${PORTSDIR}/graphics/tiff GNU_CONFIGURE= yes USE_XORG= xmu xt sm ice xext x11 xi Modified: head/biology/pymol/Makefile ============================================================================== --- head/biology/pymol/Makefile Wed Dec 11 14:42:44 2013 (r336170) +++ head/biology/pymol/Makefile Wed Dec 11 14:43:51 2013 (r336171) @@ -13,8 +13,8 @@ COMMENT= Free and Open-Source molecular BUILD_DEPENDS= ${PYNUMERIC} RUN_DEPENDS= ${PYNUMERIC} \ ${PYTHON_SITELIBDIR}/Pmw:${PORTSDIR}/x11-toolkits/py-Pmw -LIB_DEPENDS= png15:${PORTSDIR}/graphics/png \ - freetype.9:${PORTSDIR}/print/freetype2 +LIB_DEPENDS= libpng15.so:${PORTSDIR}/graphics/png \ + libfreetype.so:${PORTSDIR}/print/freetype2 VERSION= 1.5.0.1 SVNREVISION= 3978 Modified: head/biology/seaview/Makefile ============================================================================== --- head/biology/seaview/Makefile Wed Dec 11 14:42:44 2013 (r336170) +++ head/biology/seaview/Makefile Wed Dec 11 14:43:51 2013 (r336171) @@ -11,7 +11,7 @@ DISTNAME= ${PORTNAME}_${PORTVERSION} MAINTAINER= ports@FreeBSD.org COMMENT= Multiple DNA/protein sequence alignment editor -LIB_DEPENDS= fltk:${PORTSDIR}/x11-toolkits/fltk +LIB_DEPENDS= libfltk.so:${PORTSDIR}/x11-toolkits/fltk OPTIONS_DEFINE= PDFLIB OPTIONS_DEFAULT=PDFLIB @@ -39,7 +39,7 @@ NO_STAGE= yes .include <bsd.port.options.mk> .if ${PORT_OPTIONS:MPDFLIB} -LIB_DEPENDS+= pdf:${PORTSDIR}/print/pdflib +LIB_DEPENDS+= libpdf.so:${PORTSDIR}/print/pdflib MAKE_ENV+= LPDF='-L${LOCALBASE}/lib -lpdf' .else MAKE_ENV+= PDF_PS_FLAGS='-DNO_PDF'
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