Date: Fri, 7 Feb 2003 23:30:15 +0900 From: KATO Tsuguru <tkato@prontomail.com> To: FreeBSD-gnats-submit@FreeBSD.org Subject: ports/48047: Update port: biology/libgenome to 0.5.1 Message-ID: <20030207233015.4f5fd487.tkato@prontomail.com>
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>Number: 48047 >Category: ports >Synopsis: Update port: biology/libgenome to 0.5.1 >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Fri Feb 07 06:40:10 PST 2003 >Closed-Date: >Last-Modified: >Originator: KATO Tsuguru >Release: FreeBSD 4.7-RELEASE-p3 i386 >Organization: >Environment: >Description: - Update to version 0.5.1 Remove file: patch-include::gn::gnCompare.h patch-include::gn::gnException.h patch-include::gn::gnFastTranslator.h patch-include::gn::gnFileContig.h patch-include::gn::gnSourceHeader.h patch-include::gn::gnSourceQualifier.h >How-To-Repeat: >Fix: diff -urN /usr/ports/biology/libgenome/Makefile biology/libgenome/Makefile --- /usr/ports/biology/libgenome/Makefile Fri Nov 8 21:23:15 2002 +++ biology/libgenome/Makefile Tue Feb 4 23:50:19 2003 @@ -7,8 +7,7 @@ # PORTNAME= libgenome -PORTVERSION= 0.5.0 -PORTREVISION= 1 +PORTVERSION= 0.5.1 CATEGORIES= biology MASTER_SITES= http://www.libgenome.org/releases/ DISTNAME= libGenome-${PORTVERSION} @@ -17,11 +16,11 @@ USE_REINPLACE= yes USE_LIBTOOL= yes -CONFIGURE_TARGET= --build=${ARCH}-portbld-freebsd${OSREL} +CONFIGURE_TARGET= --build=${MACHINE_ARCH}-portbld-freebsd${OSREL} INSTALLS_SHLIB= yes post-patch: - @${REINPLACE_CMD} -e 's|-O3|@CXXFLAGS@|g' ${WRKSRC}/src/Makefile.in + @${REINPLACE_CMD} -e 's|-O2|@CXXFLAGS@|g' ${WRKSRC}/src/Makefile.in post-install: .if !defined(NOPORTDOCS) diff -urN /usr/ports/biology/libgenome/distinfo biology/libgenome/distinfo --- /usr/ports/biology/libgenome/distinfo Tue Jul 30 19:57:06 2002 +++ biology/libgenome/distinfo Tue Feb 4 23:42:44 2003 @@ -1 +1 @@ -MD5 (libGenome-0.5.0.tar.gz) = dc4351115328a4d10fb52850ee6675d1 +MD5 (libGenome-0.5.1.tar.gz) = da0b97fab9a374d8674a1de06a4a911c diff -urN /usr/ports/biology/libgenome/files/patch-include::gn::gnCompare.h biology/libgenome/files/patch-include::gn::gnCompare.h --- /usr/ports/biology/libgenome/files/patch-include::gn::gnCompare.h Sun Dec 22 21:51:20 2002 +++ biology/libgenome/files/patch-include::gn::gnCompare.h Thu Jan 1 09:00:00 1970 @@ -1,10 +0,0 @@ ---- include/gn/gnCompare.h.orig Tue Nov 20 09:23:47 2001 -+++ include/gn/gnCompare.h Sun Dec 22 09:45:37 2002 -@@ -15,6 +15,7 @@ - - #include "gn/gnDefs.h" - -+#include <cctype> - #include <string> - #include "gn/gnClone.h" - diff -urN /usr/ports/biology/libgenome/files/patch-include::gn::gnException.h biology/libgenome/files/patch-include::gn::gnException.h --- /usr/ports/biology/libgenome/files/patch-include::gn::gnException.h Sun Dec 22 21:51:20 2002 +++ biology/libgenome/files/patch-include::gn::gnException.h Thu Jan 1 09:00:00 1970 @@ -1,10 +0,0 @@ ---- include/gn/gnException.h.orig Sat Dec 1 05:57:29 2001 -+++ include/gn/gnException.h Sun Dec 22 12:44:39 2002 -@@ -4,6 +4,7 @@ - #include "gnClone.h" - #include "gn/gnExceptionCode.h" - #include <string> -+#include <iostream> - #include <list> - - class GNDLLEXPORT gnException diff -urN /usr/ports/biology/libgenome/files/patch-include::gn::gnFastTranslator.h biology/libgenome/files/patch-include::gn::gnFastTranslator.h --- /usr/ports/biology/libgenome/files/patch-include::gn::gnFastTranslator.h Sun Dec 29 13:44:13 2002 +++ biology/libgenome/files/patch-include::gn::gnFastTranslator.h Thu Jan 1 09:00:00 1970 @@ -1,10 +0,0 @@ ---- include/gn/gnFastTranslator.h.orig Tue Mar 19 08:52:51 2002 -+++ include/gn/gnFastTranslator.h Fri Dec 27 21:15:56 2002 -@@ -17,6 +17,7 @@ - #include "gn/gnDefs.h" - - #include <string> -+#include <iostream> - #include <vector> - #include <map> - #include "gn/gnClone.h" diff -urN /usr/ports/biology/libgenome/files/patch-include::gn::gnFileContig.h biology/libgenome/files/patch-include::gn::gnFileContig.h --- /usr/ports/biology/libgenome/files/patch-include::gn::gnFileContig.h Sun Dec 22 21:51:20 2002 +++ biology/libgenome/files/patch-include::gn::gnFileContig.h Thu Jan 1 09:00:00 1970 @@ -1,11 +0,0 @@ ---- include/gn/gnFileContig.h.orig Wed Jul 18 01:52:09 2001 -+++ include/gn/gnFileContig.h Sun Dec 22 12:51:21 2002 -@@ -17,7 +17,7 @@ - - #include <string> - #include "gn/gnClone.h" --#ifdef __GNUG__ -+#if (defined(__GNUC__) && (__GNUC__) < 3) - #include "pair.h" - #endif - diff -urN /usr/ports/biology/libgenome/files/patch-include::gn::gnSourceHeader.h biology/libgenome/files/patch-include::gn::gnSourceHeader.h --- /usr/ports/biology/libgenome/files/patch-include::gn::gnSourceHeader.h Sun Dec 22 21:51:20 2002 +++ biology/libgenome/files/patch-include::gn::gnSourceHeader.h Thu Jan 1 09:00:00 1970 @@ -1,11 +0,0 @@ ---- include/gn/gnSourceHeader.h.orig Tue Oct 16 02:59:53 2001 -+++ include/gn/gnSourceHeader.h Sun Dec 22 12:50:29 2002 -@@ -19,7 +19,7 @@ - #include "gn/gnBaseHeader.h" - #include "gn/gnBaseSource.h" - --#ifdef __GNUG__ -+#if (defined(__GNUC__) && (__GNUC__) < 3) - #include "pair.h" - #endif - diff -urN /usr/ports/biology/libgenome/files/patch-include::gn::gnSourceQualifier.h biology/libgenome/files/patch-include::gn::gnSourceQualifier.h --- /usr/ports/biology/libgenome/files/patch-include::gn::gnSourceQualifier.h Sun Dec 22 21:51:20 2002 +++ biology/libgenome/files/patch-include::gn::gnSourceQualifier.h Thu Jan 1 09:00:00 1970 @@ -1,11 +0,0 @@ ---- include/gn/gnSourceQualifier.h.orig Tue Oct 16 02:59:53 2001 -+++ include/gn/gnSourceQualifier.h Sun Dec 22 12:48:20 2002 -@@ -19,7 +19,7 @@ - #include "gn/gnBaseQualifier.h" - #include "gn/gnBaseSource.h" - --#ifdef __GNUG__ -+#if (defined(__GNUC__) && (__GNUC__) < 3) - #include "pair.h" - #endif - >Release-Note: >Audit-Trail: >Unformatted: To Unsubscribe: send mail to majordomo@FreeBSD.org with "unsubscribe freebsd-ports-bugs" in the body of the message
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