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Date:      Thu, 18 Dec 2014 19:35:08 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - 84amd64-default][biology/migrate] Failed for migrate-3.6.5 in build
Message-ID:  <201412181935.sBIJZ84w088980@beefy2.isc.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     ports@FreeBSD.org
Last committer: wen@FreeBSD.org
Ident:          $FreeBSD: head/biology/migrate/Makefile 374114 2014-12-06 14:54:48Z wen $
Log URL:        http://beefy2.isc.freebsd.org/data/84amd64-default/2014-12-18_17h11m07s/logs/migrate-3.6.5.log
Build URL:      http://beefy2.isc.freebsd.org/build.html?mastername=84amd64-default&build=2014-12-18_17h11m07s
Log:

====>> Building biology/migrate
build started at Thu Dec 18 19:34:49 UTC 2014
port directory: /usr/ports/biology/migrate
building for: FreeBSD 84amd64-default-job-07 8.4-RELEASE-p16 FreeBSD 8.4-RELEASE-p16 amd64
maintained by: ports@FreeBSD.org
Makefile ident:      $FreeBSD: head/biology/migrate/Makefile 374114 2014-12-06 14:54:48Z wen $
Poudriere version: 3.1-pre
Host OSVERSION: 1100050
Jail OSVERSION: 804000

---Begin Environment---
OSVERSION=804000
UNAME_v=FreeBSD 8.4-RELEASE-p16
UNAME_r=8.4-RELEASE-p16
FTP_PASSIVE_MODE=YES
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/84amd64-default/ref
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=migrate-3.6.5
OLDPWD=/root
PWD=/usr/local/poudriere/data/.m/84amd64-default/ref/.p/pool
MASTERNAME=84amd64-default
USER=root
HOME=/root
POUDRIERE_VERSION=3.1-pre
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
---End Environment---

---Begin OPTIONS List---
===> The following configuration options are available for migrate-3.6.5:
     DOCS=on: Build and/or install documentation
     EXAMPLES=on: Build and/or install examples
===> Use 'make config' to modify these settings
---End OPTIONS List---

--CONFIGURE_ARGS--
--prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_prog_GMAKE="make" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/migrate/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/migrate/work  HOME=/wrkdirs/usr/ports/biology/migrate/work TMPDIR="/tmp" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/migrate/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/migrate/work  HOME=/wrkdirs/usr/ports/biology/migrate/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/migrate/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/migrate/work  HOME=/wrkdirs/usr/ports/biology/migrate/work TMPDIR="/tmp" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/migrate/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/migrate/work  HOME=/wrkdirs/usr/ports/biology/migrate/work TMPDIR="/tmp" NO_PIE=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS=" -fstack-protector" LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing"  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -o root -g wheel -m 555"  BSD_INSTALL_LIB="install  -s -o root -g wheel -m 444"  BSD_INSTALL_SCRIPT="install  -o root -g wheel -m 555"  BSD_INSTALL_DATA="install  -o root -g wheel -m 0644"  BSD_INSTALL_MAN="install  -o root -g wheel -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PORTNAME=migrate
OSREL=8.4
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/migrate"
EXAMPLESDIR="share/examples/migrate"
DATADIR="share/migrate"
WWWDIR="www/migrate"
ETCDIR="etc/migrate"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/migrate
DOCSDIR=/usr/local/share/doc/migrate
EXAMPLESDIR=/usr/local/share/examples/migrate
WWWDIR=/usr/local/www/migrate
ETCDIR=/usr/local/etc/migrate
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
WITH_PKGNG=yes
#WITH_PKGNG=devel
# clean-restricted ran via poudriere.conf NO_RESTRICTED
#NO_RESTRICTED=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
=======================<phase: check-sanity   >============================
===========================================================================
=======================<phase: pkg-depends    >============================
===>   migrate-3.6.5 depends on file: /usr/local/sbin/pkg - not found
===>    Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg
===>   Installing existing package /packages/All/pkg-1.4.0.txz
[84amd64-default-job-07] Installing pkg-1.4.0...
[84amd64-default-job-07] Extracting pkg-1.4.0... done
Message for pkg-1.4.0:
 If you are upgrading from the old package format, first run:

  # pkg2ng
===>   Returning to build of migrate-3.6.5
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===> Fetching all distfiles required by migrate-3.6.5 for building
===========================================================================
=======================<phase: checksum       >============================
===> Fetching all distfiles required by migrate-3.6.5 for building
=> SHA256 Checksum OK for migrate-3.6.5.src.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===> Fetching all distfiles required by migrate-3.6.5 for building
===>  Extracting for migrate-3.6.5
=> SHA256 Checksum OK for migrate-3.6.5.src.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for migrate-3.6.5
===>  Applying FreeBSD patches for migrate-3.6.5
===========================================================================
=======================<phase: build-depends  >============================
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for migrate-3.6.5
configure: loading site script /usr/ports/Templates/config.site
checking build system type... amd64-portbld-freebsd8.4
checking host system type... amd64-portbld-freebsd8.4
checking target system type... amd64-portbld-freebsd8.4
USERFLAGS+=-O2: not found
checking for gmake... (cached) make
=======================================================================
Migrate subversion: 
Hardware: portbld
System OS: freebsd8.4  FreeBSD  
System CPU: amd64
-----------------------------------------------------------------------
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking whether we are using the GNU C++ compiler... yes
checking whether c++ accepts -g... yes
CFLAGS+=: not found
C-compiler:  cc
C++-compiler:c++
CFLAGS: -O2 -pipe -fstack-protector -fno-strict-aliasing
=======================================================================
checking for a BSD-compatible install... /usr/bin/install -c -o root -g wheel
checking for pthread_create in -pthread... yes
checking for MPI_Init in -lmpi... no
checking for exp in -lm... yes
checking how to run the C preprocessor... cpp
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking for egrep... (cached) /usr/bin/egrep
checking for ANSI C header files... (cached) yes
checking for sys/types.h... (cached) yes
checking for sys/stat.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for memory.h... (cached) yes
checking for strings.h... (cached) yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for unistd.h... (cached) yes
checking for limits.h... (cached) yes
checking for strings.h... (cached) yes
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking for an ANSI C-conforming const... yes
checking for size_t... (cached) yes
checking for int... (cached) yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking for inline... inline
checking return type of signal handlers... void
checking for strftime... (cached) yes
checking for strcspn... (cached) yes
checking for strsep... (cached) yes
checking for lgamma... yes
checking which zlib implementation to use... autodetect
checking for main in -lz... yes
checking for gzbuffer... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating conf.h
config.status: conf.h is unchanged
 
 MIGRATE-N is now setup
 to compile the program you need to type one of the
 commands below (ordered by preference):
 
 SINGLE CPU machines 
     make           # with PDF output support
                    # this might fail on first attempt,
                    # if the make fails, please let me know
                    # often linking fails because the C++ pdf library
                    # and the core migrate parts (C) mismatch
                    # check the Makefile line for STDLIB= -lstdc++
 
 SMP machines  more than 1 CPU in machine 
     make thread    # uses the thread library if present
     make           # on macs running macos 10.6+ using GrandCentral
 
 PARALLEL Computers, Clusters with MPI software 
     make mpis        # each cpu-core can be treated as a node
     make mpis-thread # experimental, may increase load per node!
------------------------------------------------------------------------
SPEED and other TESTING 
    the migrate website contains a testsuite.tar.gz that has
    many tests for single, parallel and thread compilations
    the tests are driven by a python script rt (see the README
    in the testsuite) and a submit script that allows to streamline
    submissions to a batch queue system, currently supported systems
    are SUN/ORACLE GRIDENGINE, TORQUE/MOAB, and NONE
------------------------------------------------------------------------
In case there are problems with the compile send a message to the 
migrate-support@google.com usergroup, include a log of
   ./configure
   make
=======================================================================
===========================================================================
=======================<phase: build          >============================
===>  Building for migrate-3.6.5
(cd ./haru ; make -f makefile.gcc "CC=c++" "CPP=cc" "ARCH=amd64" "MACOSVERSION=" "MYCPPFLAGS=-O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ ")
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfExceptions.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfList.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfUtils.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfStreams.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfAutoPtrObjects.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfObjects.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfContents.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfPages.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfFonts.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfXref.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfDestinations.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfOutlines.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfBorderStyle.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfAnnotations.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfDoc.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfCatalog.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfInfo.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfEncoding.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfFontDef.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfXObjects.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfFontDef_Courier.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfFontDef_Helvetica.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfFontDef_Times.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfFontDef_Symbol.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfFontDef_ZapfDingbats.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfEncoding_ISO8859.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfEncoding_KOI8.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfEncoding_MSCP.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfMbFonts.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfCMap.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfUnicodeText.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfMbFontDef_Gothic.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfMbFontDef_Mincyo.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfMbFontDef_SimHei.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfMbFontDef_SimSun.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfMbFontDef_Ming.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfMbFontDef_Batang.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfMbFontDef_Dotum.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfCMap_RKSJ.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfCMap_EUC.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfCMap_GB_EUC.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfCMap_ETen_B5.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfCMap_KSCms_UHC.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfCMap_KSC_EUC.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfPngImage.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfJpegImage.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfEncrypt.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c libharuc.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c libharuc_jpfonts.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c libharuc_krfonts.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c libharuc_cnsfonts.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c libharuc_cntfonts.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c libharu_png.cc
cc: -lstdc++: linker input file unused because linking not done
cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c libharu_jpeg.cc
cc: -lstdc++: linker input file unused because linking not done
ar rc libharu.a PdfExceptions.o  PdfList.o  PdfUtils.o  PdfStreams.o  PdfAutoPtrObjects.o  PdfObjects.o  PdfContents.o  PdfPages.o  PdfFonts.o  PdfXref.o  PdfDestinations.o  PdfOutlines.o  PdfBorderStyle.o  PdfAnnotations.o  PdfDoc.o  PdfCatalog.o  PdfInfo.o  PdfEncoding.o  PdfFontDef.o  PdfXObjects.o  PdfFontDef_Courier.o  PdfFontDef_Helvetica.o  PdfFontDef_Times.o  PdfFontDef_Symbol.o  PdfFontDef_ZapfDingbats.o  PdfEncoding_ISO8859.o  PdfEncoding_KOI8.o  PdfEncoding_MSCP.o  PdfMbFonts.o  PdfCMap.o  PdfUnicodeText.o  PdfMbFontDef_Gothic.o  PdfMbFontDef_Mincyo.o  PdfMbFontDef_SimHei.o  PdfMbFontDef_SimSun.o  PdfMbFontDef_Ming.o  PdfMbFontDef_Batang.o  PdfMbFontDef_Dotum.o  PdfCMap_RKSJ.o  PdfCMap_EUC.o  PdfCMap_GB_EUC.o  PdfCMap_ETen_B5.o  PdfCMap_KSCms_UHC.o  PdfCMap_KSC_EUC.o  PdfPngImage.o  PdfJpegImage.o  PdfEncrypt.o  libharuc.o  libharuc_jpfonts.o  libharuc_krfonts.o  libharuc_cnsfonts.o  libharuc_cntfonts.o  libharu_png.o  libharu_jpeg.o
ranlib libharu.a
Using system zlib architecture
/usr/bin/make migrate-n "CFLAGS = -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION=\"\\\"\\\"\" -DMIGRATEVERSION=\"\\\"3.6.5\\\"\"  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++" "LIBS = -Lharu -lharu  -lz -lm" "LDFLAGS =  "
cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.5\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c aic.c
cc: -lstdc++: linker input file unused because linking not done
cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.5\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c altivec.c
cc: -lstdc++: linker input file unused because linking not done
cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.5\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c autotune.c
cc: -lstdc++: linker input file unused because linking not done
cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.5\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c bayes.c
cc: -lstdc++: linker input file unused because linking not done
cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.5\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c broyden.c
cc: -lstdc++: linker input file unused because linking not done
cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.5\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c calculator.c
cc: -lstdc++: linker input file unused because linking not done
cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.5\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c combroyden2.c
cc: -lstdc++: linker input file unused because linking not done
cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.5\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c data.c
data.c:57:21: error: xlocale.h: No such file or directory
*** Error code 1

Stop in /wrkdirs/usr/ports/biology/migrate/work/migrate-3.6.5/src.
*** Error code 1

Stop in /wrkdirs/usr/ports/biology/migrate/work/migrate-3.6.5/src.
*** Error code 1

Stop in /usr/ports/biology/migrate.



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