Date: Fri, 14 Aug 2015 01:47:47 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - head-mips64-default][biology/protomol] Failed for protomol-2.0.3_12 in build Message-ID: <201508140147.t7E1ll5e087769@beefy8.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: ports@FreeBSD.org Last committer: amdmi3@FreeBSD.org Ident: $FreeBSD: head/biology/protomol/Makefile 390543 2015-06-25 09:32:18Z amdmi3 $ Log URL: http://beefy8.nyi.freebsd.org/data/head-mips64-default/p393537_s286292/logs/protomol-2.0.3_12.log Build URL: http://beefy8.nyi.freebsd.org/build.html?mastername=head-mips64-default&build=p393537_s286292 Log: ====>> Building biology/protomol build started at Fri Aug 14 00:10:29 UTC 2015 port directory: /usr/ports/biology/protomol building for: FreeBSD head-mips64-default-job-18 11.0-CURRENT FreeBSD 11.0-CURRENT r286292 mips maintained by: ports@FreeBSD.org Makefile ident: $FreeBSD: head/biology/protomol/Makefile 390543 2015-06-25 09:32:18Z amdmi3 $ Poudriere version: 3.1.7 Host OSVERSION: 1100076 Jail OSVERSION: 1100077 !!! Jail is newer than host. (Jail: 1100077, Host: 1100076) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- UNAME_p=mips64 UNAME_m=mips ABI_FILE=/usr/lib/crt1.o OSVERSION=1100077 UNAME_v=FreeBSD 11.0-CURRENT r286292 UNAME_r=11.0-CURRENT LC_COLLATE=C BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM=screen MASTERMNT=/usr/local/poudriere/data/.m/head-mips64-default/ref PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=protomol-2.0.3_12 OLDPWD=/ PWD=/usr/local/poudriere/data/.m/head-mips64-default/ref/.p/pool MASTERNAME=head-mips64-default SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root POUDRIERE_VERSION=3.1.7 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for protomol-2.0.3_12: GLUT=on: OpenGL Utility Toolkit support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --without-irix_mipspro_mpi --with-glut=yes --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/protomol/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/protomol/work HOME=/wrkdirs/usr/ports/biology/protomol/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/protomol/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/protomol/work HOME=/wrkdirs/usr/ports/biology/protomol/work TMPDIR="/tmp" NO_PIE=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -G0 -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="-I/usr/local/include" LDFLAGS="" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/protomol" EXAMPLESDIR="share/examples/protomol" DATADIR="share/protomol" WWWDIR="www/protomol" ETCDIR="etc/protomol" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/protomol DOCSDIR=/usr/local/share/doc/protomol EXAMPLESDIR=/usr/local/share/examples/protomol WWWDIR=/usr/local/www/protomol ETCDIR=/usr/local/etc/protomol --End SUB_LIST-- ---Begin make.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings <snip> /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o Writer.o `test -f 'Writer.cpp' || echo './'`Writer.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o XFigWriter.o `test -f 'XFigWriter.cpp' || echo './'`XFigWriter.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o XYZBinReader.o `test -f 'XYZBinReader.cpp' || echo './'`XYZBinReader.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o XYZBinWriter.o `test -f 'XYZBinWriter.cpp' || echo './'`XYZBinWriter.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o XYZReader.o `test -f 'XYZReader.cpp' || echo './'`XYZReader.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o XYZTrajectoryReader.o `test -f 'XYZTrajectoryReader.cpp' || echo './'`XYZTrajectoryReader.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o XYZTrajectoryWriter.o `test -f 'XYZTrajectoryWriter.cpp' || echo './'`XYZTrajectoryWriter.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o XYZWriter.o `test -f 'XYZWriter.cpp' || echo './'`XYZWriter.cpp rm -f libio.a ar cru libio.a ConfigurationReader.o DCDTrajectoryReader.o DCDTrajectoryWriter.o File.o PARReader.o PARWriter.o PDBReader.o PDBWriter.o PNGWriter.o PPMReader.o PPMWriter.o PGMReader.o PGMWriter.o PSFReader.o PSFWriter.o Reader.o Writer.o XFigWriter.o XYZBinReader.o XYZBinWriter.o XYZReader.o XYZTrajectoryReader.o XYZTrajectoryWriter.o XYZWriter.o ranlib libio.a Making all in parallel /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o Parallel.o `test -f 'Parallel.cpp' || echo './'`Parallel.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o ParallelType.o `test -f 'ParallelType.cpp' || echo './'`ParallelType.cpp rm -f libparallel.a ar cru libparallel.a Parallel.o ParallelType.o ranlib libparallel.a Making all in topology /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o ArrayCellListStructure.o `test -f 'ArrayCellListStructure.cpp' || echo './'`ArrayCellListStructure.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o C1SwitchingFunctionBase.o `test -f 'C1SwitchingFunctionBase.cpp' || echo './'`C1SwitchingFunctionBase.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o C1SwitchingFunction.o `test -f 'C1SwitchingFunction.cpp' || echo './'`C1SwitchingFunction.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o C2SwitchingFunctionBase.o `test -f 'C2SwitchingFunctionBase.cpp' || echo './'`C2SwitchingFunctionBase.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o C2SwitchingFunction.o `test -f 'C2SwitchingFunction.cpp' || echo './'`C2SwitchingFunction.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o buildCellLists.o `test -f 'buildCellLists.cpp' || echo './'`buildCellLists.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o ComplementSwitchingFunctionBase.o `test -f 'ComplementSwitchingFunctionBase.cpp' || echo './'`ComplementSwitchingFunctionBase.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o CubicCellManager.o `test -f 'CubicCellManager.cpp' || echo './'`CubicCellManager.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o CutoffSwitchingFunctionBase.o `test -f 'CutoffSwitchingFunctionBase.cpp' || echo './'`CutoffSwitchingFunctionBase.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o CutoffSwitchingFunction.o `test -f 'CutoffSwitchingFunction.cpp' || echo './'`CutoffSwitchingFunction.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o ExclusionTable.o `test -f 'ExclusionTable.cpp' || echo './'`ExclusionTable.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o ExclusionType.o `test -f 'ExclusionType.cpp' || echo './'`ExclusionType.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o GenericTopology.o `test -f 'GenericTopology.cpp' || echo './'`GenericTopology.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o LennardJonesParameterTable.o `test -f 'LennardJonesParameterTable.cpp' || echo './'`LennardJonesParameterTable.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o PeriodicBoundaryConditions.o `test -f 'PeriodicBoundaryConditions.cpp' || echo './'`PeriodicBoundaryConditions.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o RangeSwitchingFunctionBase.o `test -f 'RangeSwitchingFunctionBase.cpp' || echo './'`RangeSwitchingFunctionBase.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o ShiftSwitchingFunctionBase.o `test -f 'ShiftSwitchingFunctionBase.cpp' || echo './'`ShiftSwitchingFunctionBase.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o ShiftSwitchingFunction.o `test -f 'ShiftSwitchingFunction.cpp' || echo './'`ShiftSwitchingFunction.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o topologyutilities.o `test -f 'topologyutilities.cpp' || echo './'`topologyutilities.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o UniversalSwitchingFunctionBase.o `test -f 'UniversalSwitchingFunctionBase.cpp' || echo './'`UniversalSwitchingFunctionBase.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o VacuumBoundaryConditions.o `test -f 'VacuumBoundaryConditions.cpp' || echo './'`VacuumBoundaryConditions.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o AngleInfo.o `test -f 'AngleInfo.cpp' || echo './'`AngleInfo.cpp rm -f libtopology.a ar cru libtopology.a ArrayCellListStructure.o C1SwitchingFunctionBase.o C1SwitchingFunction.o C2SwitchingFunctionBase.o C2SwitchingFunction.o buildCellLists.o ComplementSwitchingFunctionBase.o CubicCellManager.o CutoffSwitchingFunctionBase.o CutoffSwitchingFunction.o ExclusionTable.o ExclusionType.o GenericTopology.o LennardJonesParameterTable.o PeriodicBoundaryConditions.o RangeSwitchingFunctionBase.o ShiftSwitchingFunctionBase.o ShiftSwitchingFunction.o topologyutilities.o UniversalSwitchingFunctionBase.o VacuumBoundaryConditions.o AngleInfo.o ranlib libtopology.a Making all in forces /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o AngleSystemForceBase.o `test -f 'AngleSystemForceBase.cpp' || echo './'`AngleSystemForceBase.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o BondSystemForceBase.o `test -f 'BondSystemForceBase.cpp' || echo './'`BondSystemForceBase.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o CompareForce.o `test -f 'CompareForce.cpp' || echo './'`CompareForce.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o CoulombEwaldRealForce.o `test -f 'CoulombEwaldRealForce.cpp' || echo './'`CoulombEwaldRealForce.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o CoulombEwaldRealTableForce.o `test -f 'CoulombEwaldRealTableForce.cpp' || echo './'`CoulombEwaldRealTableForce.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o CoulombForce.o `test -f 'CoulombForce.cpp' || echo './'`CoulombForce.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o CoulombMultiGridDirectForceBase.o `test -f 'CoulombMultiGridDirectForceBase.cpp' || echo './'`CoulombMultiGridDirectForceBase.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o CoulombMultiGridDirectTableForceBase.o `test -f 'CoulombMultiGridDirectTableForceBase.cpp' || echo './'`CoulombMultiGridDirectTableForceBase.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o DihedralSystemForceBase.o `test -f 'DihedralSystemForceBase.cpp' || echo './'`DihedralSystemForceBase.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o HarmDihedralSystemForceBase.o `test -f 'HarmDihedralSystemForceBase.cpp' || echo './'`HarmDihedralSystemForceBase.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o ElectricFieldSystemForceBase.o `test -f 'ElectricFieldSystemForceBase.cpp' || echo './'`ElectricFieldSystemForceBase.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o ExternalGravitationSystemForce.o `test -f 'ExternalGravitationSystemForce.cpp' || echo './'`ExternalGravitationSystemForce.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o ExternalMagneticFieldExtendedForce.o `test -f 'ExternalMagneticFieldExtendedForce.cpp' || echo './'`ExternalMagneticFieldExtendedForce.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o ExtendedCompareForce.o `test -f 'ExtendedCompareForce.cpp' || echo './'`ExtendedCompareForce.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o ExtendedForce.o `test -f 'ExtendedForce.cpp' || echo './'`ExtendedForce.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o ExtendedTimeForce.o `test -f 'ExtendedTimeForce.cpp' || echo './'`ExtendedTimeForce.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o Force.o `test -f 'Force.cpp' || echo './'`Force.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o ForceGroup.o `test -f 'ForceGroup.cpp' || echo './'`ForceGroup.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o FrictionExtendedForce.o `test -f 'FrictionExtendedForce.cpp' || echo './'`FrictionExtendedForce.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o GravitationForce.o `test -f 'GravitationForce.cpp' || echo './'`GravitationForce.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o Hermite.o `test -f 'Hermite.cpp' || echo './'`Hermite.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o ImproperSystemForceBase.o `test -f 'ImproperSystemForceBase.cpp' || echo './'`ImproperSystemForceBase.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o LennardJonesForce.o `test -f 'LennardJonesForce.cpp' || echo './'`LennardJonesForce.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o LennardJonesTableForce.o `test -f 'LennardJonesTableForce.cpp' || echo './'`LennardJonesTableForce.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o MagneticDipoleForce.o `test -f 'MagneticDipoleForce.cpp' || echo './'`MagneticDipoleForce.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o MagneticDipoleMirrorSystemForceBase.o `test -f 'MagneticDipoleMirrorSystemForceBase.cpp' || echo './'`MagneticDipoleMirrorSystemForceBase.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o MetaForce.o `test -f 'MetaForce.cpp' || echo './'`MetaForce.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o MollyForce.o `test -f 'MollyForce.cpp' || echo './'`MollyForce.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o NonbondedCutoffForceBase.o `test -f 'NonbondedCutoffForceBase.cpp' || echo './'`NonbondedCutoffForceBase.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o NonbondedFullEwaldSystemForceBase.o `test -f 'NonbondedFullEwaldSystemForceBase.cpp' || echo './'`NonbondedFullEwaldSystemForceBase.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o NonbondedFullSystemForceBase.o `test -f 'NonbondedFullSystemForceBase.cpp' || echo './'`NonbondedFullSystemForceBase.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o NonbondedMultiGridSystemForceBase.o `test -f 'NonbondedMultiGridSystemForceBase.cpp' || echo './'`NonbondedMultiGridSystemForceBase.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o NonbondedPMEwaldSystemForceBase.o `test -f 'NonbondedPMEwaldSystemForceBase.cpp' || echo './'`NonbondedPMEwaldSystemForceBase.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o NonbondedSimpleFullSystemForceBase.o `test -f 'NonbondedSimpleFullSystemForceBase.cpp' || echo './'`NonbondedSimpleFullSystemForceBase.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o PaulTrapExtendedForceBase.o `test -f 'PaulTrapExtendedForceBase.cpp' || echo './'`PaulTrapExtendedForceBase.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o ReducedHessCoulomb.o `test -f 'ReducedHessCoulomb.cpp' || echo './'`ReducedHessCoulomb.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o ReducedHessLennardJones.o `test -f 'ReducedHessLennardJones.cpp' || echo './'`ReducedHessLennardJones.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o SphericalSystemForce.o `test -f 'SphericalSystemForce.cpp' || echo './'`SphericalSystemForce.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o SystemCompareForce.o `test -f 'SystemCompareForce.cpp' || echo './'`SystemCompareForce.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o SystemForce.o `test -f 'SystemForce.cpp' || echo './'`SystemForce.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o SystemTimeForce.o `test -f 'SystemTimeForce.cpp' || echo './'`SystemTimeForce.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o TimeForce.o `test -f 'TimeForce.cpp' || echo './'`TimeForce.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o WrapperMetaForce.o `test -f 'WrapperMetaForce.cpp' || echo './'`WrapperMetaForce.cpp rm -f libforces.a ar cru libforces.a AngleSystemForceBase.o BondSystemForceBase.o CompareForce.o CoulombEwaldRealForce.o CoulombEwaldRealTableForce.o CoulombForce.o CoulombMultiGridDirectForceBase.o CoulombMultiGridDirectTableForceBase.o DihedralSystemForceBase.o HarmDihedralSystemForceBase.o ElectricFieldSystemForceBase.o ExternalGravitationSystemForce.o ExternalMagneticFieldExtendedForce.o ExtendedCompareForce.o ExtendedForce.o ExtendedTimeForce.o Force.o ForceGroup.o FrictionExtendedForce.o GravitationForce.o Hermite.o ImproperSystemForceBase.o LennardJonesForce.o LennardJonesTableForce.o MagneticDipoleForce.o MagneticDipoleMirrorSystemForceBase.o MetaForce.o MollyForce.o NonbondedCutoffForceBase.o NonbondedFullEwaldSystemForceBase.o NonbondedFullSystemForceBase.o NonbondedMultiGridSystemForceBase.o NonbondedPMEwaldSystemForceBase.o NonbondedSimpleFullSystemForceBase.o PaulTrapExtendedForceBase.o ReducedHessCoulomb.o ReducedHessLennardJones.o SphericalSystemForce.o Syste mCompareForce.o SystemForce.o SystemTimeForce.o TimeForce.o WrapperMetaForce.o ranlib libforces.a Making all in imd /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o IMDElf.o `test -f 'IMDElf.cpp' || echo './'`IMDElf.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o imd.o `test -f 'imd.cpp' || echo './'`imd.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o vmdsock.o `test -f 'vmdsock.cpp' || echo './'`vmdsock.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o HapticSystemForce.o `test -f 'HapticSystemForce.cpp' || echo './'`HapticSystemForce.cpp rm -f libimd.a ar cru libimd.a IMDElf.o imd.o vmdsock.o HapticSystemForce.o ranlib libimd.a Making all in integrators /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o ModifierMetaShake.o `test -f 'ModifierMetaShake.cpp' || echo './'`ModifierMetaShake.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o ModifierMetaRattle.o `test -f 'ModifierMetaRattle.cpp' || echo './'`ModifierMetaRattle.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o ModifierMetaRattleShake.o `test -f 'ModifierMetaRattleShake.cpp' || echo './'`ModifierMetaRattleShake.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o NPTVerletIntegrator.o `test -f 'NPTVerletIntegrator.cpp' || echo './'`NPTVerletIntegrator.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o NVTVerletIntegrator.o `test -f 'NVTVerletIntegrator.cpp' || echo './'`NVTVerletIntegrator.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o BSplineMOLLYIntegrator.o `test -f 'BSplineMOLLYIntegrator.cpp' || echo './'`BSplineMOLLYIntegrator.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o EquilibriumMOLLYIntegrator.o `test -f 'EquilibriumMOLLYIntegrator.cpp' || echo './'`EquilibriumMOLLYIntegrator.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o DihedralHMCIntegrator.o `test -f 'DihedralHMCIntegrator.cpp' || echo './'`DihedralHMCIntegrator.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o DLMCIntegrator.o `test -f 'DLMCIntegrator.cpp' || echo './'`DLMCIntegrator.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o ShadowHMCIntegrator.o `test -f 'ShadowHMCIntegrator.cpp' || echo './'`ShadowHMCIntegrator.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o HMCIntegrator.o `test -f 'HMCIntegrator.cpp' || echo './'`HMCIntegrator.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o MCIntegrator.o `test -f 'MCIntegrator.cpp' || echo './'`MCIntegrator.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o ImpulseIntegrator.o `test -f 'ImpulseIntegrator.cpp' || echo './'`ImpulseIntegrator.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o Integrator.o `test -f 'Integrator.cpp' || echo './'`Integrator.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o IntegratorDefinition.o `test -f 'IntegratorDefinition.cpp' || echo './'`IntegratorDefinition.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o LeapfrogIntegrator.o `test -f 'LeapfrogIntegrator.cpp' || echo './'`LeapfrogIntegrator.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o DMDLeapfrogIntegrator.o `test -f 'DMDLeapfrogIntegrator.cpp' || echo './'`DMDLeapfrogIntegrator.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o BBKIntegrator.o `test -f 'BBKIntegrator.cpp' || echo './'`BBKIntegrator.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o ModifierShake.o `test -f 'ModifierShake.cpp' || echo './'`ModifierShake.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o ModifierRattle.o `test -f 'ModifierRattle.cpp' || echo './'`ModifierRattle.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o ModifierNPTShake.o `test -f 'ModifierNPTShake.cpp' || echo './'`ModifierNPTShake.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o ModifierNPTRattle.o `test -f 'ModifierNPTRattle.cpp' || echo './'`ModifierNPTRattle.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o ModifierNVTShake.o `test -f 'ModifierNVTShake.cpp' || echo './'`ModifierNVTShake.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o ModifierNVTRattle.o `test -f 'ModifierNVTRattle.cpp' || echo './'`ModifierNVTRattle.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o PLeapfrogIntegrator.o `test -f 'PLeapfrogIntegrator.cpp' || echo './'`PLeapfrogIntegrator.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o MOLLYIntegrator.o `test -f 'MOLLYIntegrator.cpp' || echo './'`MOLLYIntegrator.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o UmbrellaIntegrator.o `test -f 'UmbrellaIntegrator.cpp' || echo './'`UmbrellaIntegrator.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o MTSIntegrator.o `test -f 'MTSIntegrator.cpp' || echo './'`MTSIntegrator.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o NoseNVTLeapfrogIntegrator.o `test -f 'NoseNVTLeapfrogIntegrator.cpp' || echo './'`NoseNVTLeapfrogIntegrator.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o PaulTrapIntegrator.o `test -f 'PaulTrapIntegrator.cpp' || echo './'`PaulTrapIntegrator.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o LangevinImpulseIntegrator.o `test -f 'LangevinImpulseIntegrator.cpp' || echo './'`LangevinImpulseIntegrator.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o StandardIntegrator.o `test -f 'StandardIntegrator.cpp' || echo './'`StandardIntegrator.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o STSIntegrator.o `test -f 'STSIntegrator.cpp' || echo './'`STSIntegrator.cpp rm -f libintegrators.a ar cru libintegrators.a ModifierMetaShake.o ModifierMetaRattle.o ModifierMetaRattleShake.o NPTVerletIntegrator.o NVTVerletIntegrator.o BSplineMOLLYIntegrator.o EquilibriumMOLLYIntegrator.o DihedralHMCIntegrator.o DLMCIntegrator.o ShadowHMCIntegrator.o HMCIntegrator.o MCIntegrator.o ImpulseIntegrator.o Integrator.o IntegratorDefinition.o LeapfrogIntegrator.o DMDLeapfrogIntegrator.o BBKIntegrator.o ModifierShake.o ModifierRattle.o ModifierNPTShake.o ModifierNPTRattle.o ModifierNVTShake.o ModifierNVTRattle.o PLeapfrogIntegrator.o MOLLYIntegrator.o UmbrellaIntegrator.o MTSIntegrator.o NoseNVTLeapfrogIntegrator.o PaulTrapIntegrator.o LangevinImpulseIntegrator.o StandardIntegrator.o STSIntegrator.o NPTVerletIntegrator.o NVTVerletIntegrator.o ranlib libintegrators.a Making all in frontend /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o HelpTextFactory.o `test -f 'HelpTextFactory.cpp' || echo './'`HelpTextFactory.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o ForceFactoryDetails.o `test -f 'ForceFactoryDetails.cpp' || echo './'`ForceFactoryDetails.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o InputPosVel.o `test -f 'InputPosVel.cpp' || echo './'`InputPosVel.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o InputPosVelType.o `test -f 'InputPosVelType.cpp' || echo './'`InputPosVelType.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o IntegratorFactoryDetails.o `test -f 'IntegratorFactoryDetails.cpp' || echo './'`IntegratorFactoryDetails.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o Output.o `test -f 'Output.cpp' || echo './'`Output.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o OutputCache.o `test -f 'OutputCache.cpp' || echo './'`OutputCache.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o OutputCollection.o `test -f 'OutputCollection.cpp' || echo './'`OutputCollection.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o OutputDCDTrajectory.o `test -f 'OutputDCDTrajectory.cpp' || echo './'`OutputDCDTrajectory.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o OutputDiffusion.o `test -f 'OutputDiffusion.cpp' || echo './'`OutputDiffusion.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o OutputDihedrals.o `test -f 'OutputDihedrals.cpp' || echo './'`OutputDihedrals.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o OutputEnergies.o `test -f 'OutputEnergies.cpp' || echo './'`OutputEnergies.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o OutputFactoryDetails.o `test -f 'OutputFactoryDetails.cpp' || echo './'`OutputFactoryDetails.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o OutputFile.o `test -f 'OutputFile.cpp' || echo './'`OutputFile.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o OutputFinalXYZBinPos.o `test -f 'OutputFinalXYZBinPos.cpp' || echo './'`OutputFinalXYZBinPos.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o OutputFinalXYZBinVel.o `test -f 'OutputFinalXYZBinVel.cpp' || echo './'`OutputFinalXYZBinVel.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o OutputFinalXYZPos.o `test -f 'OutputFinalXYZPos.cpp' || echo './'`OutputFinalXYZPos.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o OutputFinalPDBPos.o `test -f 'OutputFinalPDBPos.cpp' || echo './'`OutputFinalPDBPos.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o OutputFinalXYZVel.o `test -f 'OutputFinalXYZVel.cpp' || echo './'`OutputFinalXYZVel.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o OutputMomentum.o `test -f 'OutputMomentum.cpp' || echo './'`OutputMomentum.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o OutputPaulTrap.o `test -f 'OutputPaulTrap.cpp' || echo './'`OutputPaulTrap.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o OutputPDBFramePos.o `test -f 'OutputPDBFramePos.cpp' || echo './'`OutputPDBFramePos.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o OutputScreen.o `test -f 'OutputScreen.cpp' || echo './'`OutputScreen.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o OutputTemperatures.o `test -f 'OutputTemperatures.cpp' || echo './'`OutputTemperatures.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o OutputXYZTrajectoryForce.o `test -f 'OutputXYZTrajectoryForce.cpp' || echo './'`OutputXYZTrajectoryForce.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o OutputXYZTrajectoryPos.o `test -f 'OutputXYZTrajectoryPos.cpp' || echo './'`OutputXYZTrajectoryPos.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o OutputXYZTrajectoryVel.o `test -f 'OutputXYZTrajectoryVel.cpp' || echo './'`OutputXYZTrajectoryVel.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o TopologyFactoryDetails.o `test -f 'TopologyFactoryDetails.cpp' || echo './'`TopologyFactoryDetails.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o buildTopology.o `test -f 'buildTopology.cpp' || echo './'`buildTopology.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o inputValueDefinitions.o `test -f 'inputValueDefinitions.cpp' || echo './'`inputValueDefinitions.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o parseCommandLine.o `test -f 'parseCommandLine.cpp' || echo './'`parseCommandLine.cpp rm -f libfrontend.a ar cru libfrontend.a HelpTextFactory.o ForceFactoryDetails.o InputPosVel.o InputPosVelType.o IntegratorFactoryDetails.o Output.o OutputCache.o OutputCollection.o OutputDCDTrajectory.o OutputDiffusion.o OutputDihedrals.o OutputEnergies.o OutputFactoryDetails.o OutputFile.o OutputFinalXYZBinPos.o OutputFinalXYZBinVel.o OutputFinalXYZPos.o OutputFinalPDBPos.o OutputFinalXYZVel.o OutputMomentum.o OutputPaulTrap.o OutputPDBFramePos.o OutputScreen.o OutputTemperatures.o OutputXYZTrajectoryForce.o OutputXYZTrajectoryPos.o OutputXYZTrajectoryVel.o TopologyFactoryDetails.o buildTopology.o inputValueDefinitions.o parseCommandLine.o ranlib libfrontend.a Making all in factories /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I../../framework/factories -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o registerForceExemplars.o `test -f 'registerForceExemplars.cpp' || echo './'`registerForceExemplars.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I../../framework/factories -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o registerForceExemplarsBonded.o `test -f 'registerForceExemplarsBonded.cpp' || echo './'`registerForceExemplarsBonded.cpp /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I../../framework/factories -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -L/usr/local/lib -c -o registerForceExemplarsCutoff.o `test -f 'registerForceExemplarsCutoff.cpp' || echo './'`registerForceExemplarsCutoff.cpp In file included from registerForceExemplarsCutoff.cpp:9: ./../framework/forces/CoulombMultiGridDirectForce.h: In static member function 'static ProtoMol::CoulombMultiGridDirectForce<TKernel> ProtoMol::CoulombMultiGridDirectForce<TKernel>::make(std::string&, const std::vector<ProtoMol::Value, std::allocator<ProtoMol::Value> >&)': ./../framework/forces/CoulombMultiGridDirectForce.h:60: internal compiler error: Segmentation fault Please submit a full bug report, with preprocessed source if appropriate. See <URL:http://www.freebsd.org/support.html>; for instructions. *** Error code 1 Stop. make[4]: stopped in /wrkdirs/usr/ports/biology/protomol/work/protomol/framework/factories *** Error code 1 Stop. make[3]: stopped in /wrkdirs/usr/ports/biology/protomol/work/protomol/framework *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/biology/protomol/work/protomol *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/biology/protomol/work/protomol *** Error code 1 Stop. make: stopped in /usr/ports/biology/protomol
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