Date: Fri, 21 Aug 2009 13:48:54 GMT From: Wen Heping <wenheping@gmail.com> To: freebsd-gnats-submit@FreeBSD.org Subject: ports/138038: [Update]biology/py-biopython:update to 1.5.1 Message-ID: <200908211348.n7LDms2Y012393@www.freebsd.org> Resent-Message-ID: <200908211350.n7LDo4ww052537@freefall.freebsd.org>
next in thread | raw e-mail | index | archive | help
>Number: 138038 >Category: ports >Synopsis: [Update]biology/py-biopython:update to 1.5.1 >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: update >Submitter-Id: current-users >Arrival-Date: Fri Aug 21 13:50:03 UTC 2009 >Closed-Date: >Last-Modified: >Originator: Wen Heping >Release: FreeBSD 8.0-Current >Organization: ChangAn Middle School >Environment: FreeBSD fb8.wenjing.com 8.0-CURRENT FreeBSD 8.0-CURRENT #0: Sun Mar 22 22:12:06 CST 2009 root@fb8.wenjing.com:/usr/obj/usr/src/sys/GENERIC i386 >Description: update to 1.51 from 1.48 >How-To-Repeat: >Fix: Patch attached with submission follows: diff -urN py-biopython/Makefile py-biopython.new/Makefile --- py-biopython/Makefile 2008-10-11 23:26:33.000000000 +0800 +++ py-biopython.new/Makefile 2009-08-21 21:36:18.000000000 +0800 @@ -6,7 +6,7 @@ # PORTNAME= biopython -PORTVERSION= 1.48 +PORTVERSION= 1.51 CATEGORIES= biology python MASTER_SITES= http://www.biopython.org/DIST/ PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -14,13 +14,11 @@ MAINTAINER= mauricio@arareko.net COMMENT= A collection of Python modules for bioinformatics -BUILD_DEPENDS= ${PYNUMERIC} \ +BUILD_DEPENDS= ${PYNUMPY} \ ${PYTHON_SITELIBDIR}/mx/TextTools/__init__.py:${PORTSDIR}/lang/py-mx-base RUN_DEPENDS= ${BUILD_DEPENDS} -CONFLICTS= py*-martel-[0-9]* - -USE_PYTHON= 2.3+ +USE_PYTHON= 2.4+ USE_PYDISTUTILS=yes .if !defined(WITHOUT_REPORTLAB) diff -urN py-biopython/distinfo py-biopython.new/distinfo --- py-biopython/distinfo 2008-10-11 23:26:33.000000000 +0800 +++ py-biopython.new/distinfo 2009-08-21 17:21:54.000000000 +0800 @@ -1,3 +1,3 @@ -MD5 (biopython-1.48.tar.gz) = b049e3af8128bea68e4e86b55c6d0996 -SHA256 (biopython-1.48.tar.gz) = cfb3a1774d1d4b01a66b3428cec7b4c943517b2485e0ca577a6b540818f29cb0 -SIZE (biopython-1.48.tar.gz) = 4149100 +MD5 (biopython-1.51.tar.gz) = e973cb96b44b47526d31b6a0039c686f +SHA256 (biopython-1.51.tar.gz) = 0ebf44e6376d7b44fb2857e751d388f30402d6a81798821e40a7f7b92a4b036b +SIZE (biopython-1.51.tar.gz) = 5557548 diff -urN py-biopython/files/patch-setup.py py-biopython.new/files/patch-setup.py --- py-biopython/files/patch-setup.py 2007-05-30 14:57:20.000000000 +0800 +++ py-biopython.new/files/patch-setup.py 1970-01-01 08:00:00.000000000 +0800 @@ -1,34 +0,0 @@ ---- setup.py.orig Sat Mar 17 13:21:04 2007 -+++ setup.py Mon May 28 17:01:45 2007 -@@ -112,7 +112,7 @@ - - - # Compile KDTree ? Not compiled by default -- print "\n*** Bio.KDTree *** NOT built by default " -+# print "\n*** Bio.KDTree *** NOT built by default " - kdtree_msg = """ - The Bio.PDB.NeighborSearch module depends on the Bio.KDTree module, - which in turn, depends on C++ code that does not compile cleanly on -@@ -120,14 +120,14 @@ - - Would you like to build Bio.KDTree ?""" - -- if get_yes_or_no (kdtree_msg, 0): -- NUMPY_PACKAGES.append("Bio.KDTree") -- NUMPY_EXTENSIONS.append( -- CplusplusExtension('Bio.KDTree._CKDTree', -- ["Bio/KDTree/KDTree.cpp", -- "Bio/KDTree/KDTree.swig.cpp"], -- libraries=["stdc++"], -- language="c++")) -+# if get_yes_or_no (kdtree_msg, 0): -+ NUMPY_PACKAGES.append("Bio.KDTree") -+ NUMPY_EXTENSIONS.append( -+ CplusplusExtension('Bio.KDTree._CKDTree', -+ ["Bio/KDTree/KDTree.cpp", -+ "Bio/KDTree/KDTree.swig.cpp"], -+ libraries=["stdc++"], -+ language="c++")) - - - return 1 diff -urN py-biopython/pkg-plist py-biopython.new/pkg-plist --- py-biopython/pkg-plist 2008-10-11 23:26:33.000000000 +0800 +++ py-biopython.new/pkg-plist 2009-08-21 21:10:23.000000000 +0800 @@ -1,15 +1,52 @@ +%%PYTHON_SITELIBDIR%%/BioSQL/BioSeq.py +%%PYTHON_SITELIBDIR%%/BioSQL/BioSeq.pyc +%%PYTHON_SITELIBDIR%%/BioSQL/BioSeq.pyo +%%PYTHON_SITELIBDIR%%/BioSQL/BioSeqDatabase.py +%%PYTHON_SITELIBDIR%%/BioSQL/BioSeqDatabase.pyc +%%PYTHON_SITELIBDIR%%/BioSQL/BioSeqDatabase.pyo +%%PYTHON_SITELIBDIR%%/BioSQL/DBUtils.py +%%PYTHON_SITELIBDIR%%/BioSQL/DBUtils.pyc +%%PYTHON_SITELIBDIR%%/BioSQL/DBUtils.pyo +%%PYTHON_SITELIBDIR%%/BioSQL/Loader.py +%%PYTHON_SITELIBDIR%%/BioSQL/Loader.pyc +%%PYTHON_SITELIBDIR%%/BioSQL/Loader.pyo +%%PYTHON_SITELIBDIR%%/BioSQL/__init__.py +%%PYTHON_SITELIBDIR%%/BioSQL/__init__.pyc +%%PYTHON_SITELIBDIR%%/BioSQL/__init__.pyo +@dirrm %%PYTHON_SITELIBDIR%%/BioSQL %%PYTHON_SITELIBDIR%%/Bio/Affy/CelFile.py %%PYTHON_SITELIBDIR%%/Bio/Affy/CelFile.pyc %%PYTHON_SITELIBDIR%%/Bio/Affy/CelFile.pyo %%PYTHON_SITELIBDIR%%/Bio/Affy/__init__.py %%PYTHON_SITELIBDIR%%/Bio/Affy/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/Affy/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/Ais/__init__.py -%%PYTHON_SITELIBDIR%%/Bio/Ais/__init__.pyc -%%PYTHON_SITELIBDIR%%/Bio/Ais/__init__.pyo %%PYTHON_SITELIBDIR%%/Bio/Align/AlignInfo.py %%PYTHON_SITELIBDIR%%/Bio/Align/AlignInfo.pyc %%PYTHON_SITELIBDIR%%/Bio/Align/AlignInfo.pyo +%%PYTHON_SITELIBDIR%%/Bio/Align/Applications/_Clustalw.py +%%PYTHON_SITELIBDIR%%/Bio/Align/Applications/_Clustalw.pyc +%%PYTHON_SITELIBDIR%%/Bio/Align/Applications/_Clustalw.pyo +%%PYTHON_SITELIBDIR%%/Bio/Align/Applications/_Dialign.py +%%PYTHON_SITELIBDIR%%/Bio/Align/Applications/_Dialign.pyc +%%PYTHON_SITELIBDIR%%/Bio/Align/Applications/_Dialign.pyo +%%PYTHON_SITELIBDIR%%/Bio/Align/Applications/_Mafft.py +%%PYTHON_SITELIBDIR%%/Bio/Align/Applications/_Mafft.pyc +%%PYTHON_SITELIBDIR%%/Bio/Align/Applications/_Mafft.pyo +%%PYTHON_SITELIBDIR%%/Bio/Align/Applications/_Muscle.py +%%PYTHON_SITELIBDIR%%/Bio/Align/Applications/_Muscle.pyc +%%PYTHON_SITELIBDIR%%/Bio/Align/Applications/_Muscle.pyo +%%PYTHON_SITELIBDIR%%/Bio/Align/Applications/_Prank.py +%%PYTHON_SITELIBDIR%%/Bio/Align/Applications/_Prank.pyc +%%PYTHON_SITELIBDIR%%/Bio/Align/Applications/_Prank.pyo +%%PYTHON_SITELIBDIR%%/Bio/Align/Applications/_Probcons.py +%%PYTHON_SITELIBDIR%%/Bio/Align/Applications/_Probcons.pyc +%%PYTHON_SITELIBDIR%%/Bio/Align/Applications/_Probcons.pyo +%%PYTHON_SITELIBDIR%%/Bio/Align/Applications/_TCoffee.py +%%PYTHON_SITELIBDIR%%/Bio/Align/Applications/_TCoffee.pyc +%%PYTHON_SITELIBDIR%%/Bio/Align/Applications/_TCoffee.pyo +%%PYTHON_SITELIBDIR%%/Bio/Align/Applications/__init__.py +%%PYTHON_SITELIBDIR%%/Bio/Align/Applications/__init__.pyc +%%PYTHON_SITELIBDIR%%/Bio/Align/Applications/__init__.pyo %%PYTHON_SITELIBDIR%%/Bio/Align/FormatConvert.py %%PYTHON_SITELIBDIR%%/Bio/Align/FormatConvert.pyc %%PYTHON_SITELIBDIR%%/Bio/Align/FormatConvert.pyo @@ -100,15 +137,6 @@ %%PYTHON_SITELIBDIR%%/Bio/CAPS/__init__.py %%PYTHON_SITELIBDIR%%/Bio/CAPS/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/CAPS/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/CDD/Record.py -%%PYTHON_SITELIBDIR%%/Bio/CDD/Record.pyc -%%PYTHON_SITELIBDIR%%/Bio/CDD/Record.pyo -%%PYTHON_SITELIBDIR%%/Bio/CDD/__init__.py -%%PYTHON_SITELIBDIR%%/Bio/CDD/__init__.pyc -%%PYTHON_SITELIBDIR%%/Bio/CDD/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/CDD/cdd_format.py -%%PYTHON_SITELIBDIR%%/Bio/CDD/cdd_format.pyc -%%PYTHON_SITELIBDIR%%/Bio/CDD/cdd_format.pyo %%PYTHON_SITELIBDIR%%/Bio/Clustalw/__init__.py %%PYTHON_SITELIBDIR%%/Bio/Clustalw/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/Clustalw/__init__.pyo @@ -122,9 +150,6 @@ %%PYTHON_SITELIBDIR%%/Bio/Crystal/__init__.py %%PYTHON_SITELIBDIR%%/Bio/Crystal/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/Crystal/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/DBXRef.py -%%PYTHON_SITELIBDIR%%/Bio/DBXRef.pyc -%%PYTHON_SITELIBDIR%%/Bio/DBXRef.pyo %%PYTHON_SITELIBDIR%%/Bio/Data/CodonTable.py %%PYTHON_SITELIBDIR%%/Bio/Data/CodonTable.pyc %%PYTHON_SITELIBDIR%%/Bio/Data/CodonTable.pyo @@ -134,21 +159,9 @@ %%PYTHON_SITELIBDIR%%/Bio/Data/__init__.py %%PYTHON_SITELIBDIR%%/Bio/Data/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/Data/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/Decode.py -%%PYTHON_SITELIBDIR%%/Bio/Decode.pyc -%%PYTHON_SITELIBDIR%%/Bio/Decode.pyo %%PYTHON_SITELIBDIR%%/Bio/DocSQL.py %%PYTHON_SITELIBDIR%%/Bio/DocSQL.pyc %%PYTHON_SITELIBDIR%%/Bio/DocSQL.pyo -%%PYTHON_SITELIBDIR%%/Bio/ECell/Record.py -%%PYTHON_SITELIBDIR%%/Bio/ECell/Record.pyc -%%PYTHON_SITELIBDIR%%/Bio/ECell/Record.pyo -%%PYTHON_SITELIBDIR%%/Bio/ECell/__init__.py -%%PYTHON_SITELIBDIR%%/Bio/ECell/__init__.pyc -%%PYTHON_SITELIBDIR%%/Bio/ECell/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/ECell/ecell_format.py -%%PYTHON_SITELIBDIR%%/Bio/ECell/ecell_format.pyc -%%PYTHON_SITELIBDIR%%/Bio/ECell/ecell_format.pyo %%PYTHON_SITELIBDIR%%/Bio/EUtils/Config.py %%PYTHON_SITELIBDIR%%/Bio/EUtils/Config.pyc %%PYTHON_SITELIBDIR%%/Bio/EUtils/Config.pyo @@ -224,9 +237,6 @@ %%PYTHON_SITELIBDIR%%/Bio/Emboss/Applications.py %%PYTHON_SITELIBDIR%%/Bio/Emboss/Applications.pyc %%PYTHON_SITELIBDIR%%/Bio/Emboss/Applications.pyo -%%PYTHON_SITELIBDIR%%/Bio/Emboss/Primer.py -%%PYTHON_SITELIBDIR%%/Bio/Emboss/Primer.pyc -%%PYTHON_SITELIBDIR%%/Bio/Emboss/Primer.pyo %%PYTHON_SITELIBDIR%%/Bio/Emboss/Primer3.py %%PYTHON_SITELIBDIR%%/Bio/Emboss/Primer3.pyc %%PYTHON_SITELIBDIR%%/Bio/Emboss/Primer3.pyo @@ -236,23 +246,16 @@ %%PYTHON_SITELIBDIR%%/Bio/Emboss/__init__.py %%PYTHON_SITELIBDIR%%/Bio/Emboss/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/Emboss/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/Emboss/primer3_format.py -%%PYTHON_SITELIBDIR%%/Bio/Emboss/primer3_format.pyc -%%PYTHON_SITELIBDIR%%/Bio/Emboss/primer3_format.pyo -%%PYTHON_SITELIBDIR%%/Bio/Emboss/primersearch_format.py -%%PYTHON_SITELIBDIR%%/Bio/Emboss/primersearch_format.pyc -%%PYTHON_SITELIBDIR%%/Bio/Emboss/primersearch_format.pyo %%PYTHON_SITELIBDIR%%/Bio/Encodings/IUPACEncoding.py %%PYTHON_SITELIBDIR%%/Bio/Encodings/IUPACEncoding.pyc %%PYTHON_SITELIBDIR%%/Bio/Encodings/IUPACEncoding.pyo %%PYTHON_SITELIBDIR%%/Bio/Encodings/__init__.py %%PYTHON_SITELIBDIR%%/Bio/Encodings/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/Encodings/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/Entrez/__init__.py -%%PYTHON_SITELIBDIR%%/Bio/Entrez/__init__.pyc -%%PYTHON_SITELIBDIR%%/Bio/Entrez/__init__.pyo %%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/EMBL_General.mod.dtd %%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/GenBank_General.mod.dtd +%%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/HomoloGene.dtd +%%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/HomoloGene.mod.dtd %%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd %%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd %%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd @@ -293,20 +296,41 @@ %%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/eSummary_041029.dtd %%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/egquery.dtd %%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/nlmcommon_080101.dtd +%%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/nlmcommon_090101.dtd %%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/nlmmedline_080101.dtd +%%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/nlmmedline_090101.dtd %%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd +%%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd +%%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/nlmserials_080101.dtd %%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd +%%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd %%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/pubmed_080101.dtd +%%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/pubmed_090101.dtd %%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/taxon.dtd %%PYTHON_SITELIBDIR%%/Bio/Entrez/Parser.py %%PYTHON_SITELIBDIR%%/Bio/Entrez/Parser.pyc %%PYTHON_SITELIBDIR%%/Bio/Entrez/Parser.pyo -%%PYTHON_SITELIBDIR%%/Bio/Entrez/SerialSet.py -%%PYTHON_SITELIBDIR%%/Bio/Entrez/SerialSet.pyc -%%PYTHON_SITELIBDIR%%/Bio/Entrez/SerialSet.pyo +%%PYTHON_SITELIBDIR%%/Bio/Entrez/__init__.py +%%PYTHON_SITELIBDIR%%/Bio/Entrez/__init__.pyc +%%PYTHON_SITELIBDIR%%/Bio/Entrez/__init__.pyo %%PYTHON_SITELIBDIR%%/Bio/Enzyme/__init__.py %%PYTHON_SITELIBDIR%%/Bio/Enzyme/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/Enzyme/__init__.pyo +%%PYTHON_SITELIBDIR%%/Bio/ExPASy/Enzyme.py +%%PYTHON_SITELIBDIR%%/Bio/ExPASy/Enzyme.pyc +%%PYTHON_SITELIBDIR%%/Bio/ExPASy/Enzyme.pyo +%%PYTHON_SITELIBDIR%%/Bio/ExPASy/Prodoc.py +%%PYTHON_SITELIBDIR%%/Bio/ExPASy/Prodoc.pyc +%%PYTHON_SITELIBDIR%%/Bio/ExPASy/Prodoc.pyo +%%PYTHON_SITELIBDIR%%/Bio/ExPASy/Prosite.py +%%PYTHON_SITELIBDIR%%/Bio/ExPASy/Prosite.pyc +%%PYTHON_SITELIBDIR%%/Bio/ExPASy/Prosite.pyo +%%PYTHON_SITELIBDIR%%/Bio/ExPASy/ScanProsite.py +%%PYTHON_SITELIBDIR%%/Bio/ExPASy/ScanProsite.pyc +%%PYTHON_SITELIBDIR%%/Bio/ExPASy/ScanProsite.pyo +%%PYTHON_SITELIBDIR%%/Bio/ExPASy/__init__.py +%%PYTHON_SITELIBDIR%%/Bio/ExPASy/__init__.pyc +%%PYTHON_SITELIBDIR%%/Bio/ExPASy/__init__.pyo %%PYTHON_SITELIBDIR%%/Bio/FSSP/FSSPTools.py %%PYTHON_SITELIBDIR%%/Bio/FSSP/FSSPTools.pyc %%PYTHON_SITELIBDIR%%/Bio/FSSP/FSSPTools.pyo @@ -418,9 +442,6 @@ %%PYTHON_SITELIBDIR%%/Bio/Geo/__init__.py %%PYTHON_SITELIBDIR%%/Bio/Geo/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/Geo/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/Gobase/__init__.py -%%PYTHON_SITELIBDIR%%/Bio/Gobase/__init__.pyc -%%PYTHON_SITELIBDIR%%/Bio/Gobase/__init__.pyo %%PYTHON_SITELIBDIR%%/Bio/Graphics/BasicChromosome.py %%PYTHON_SITELIBDIR%%/Bio/Graphics/BasicChromosome.pyc %%PYTHON_SITELIBDIR%%/Bio/Graphics/BasicChromosome.pyo @@ -433,6 +454,39 @@ %%PYTHON_SITELIBDIR%%/Bio/Graphics/Distribution.py %%PYTHON_SITELIBDIR%%/Bio/Graphics/Distribution.pyc %%PYTHON_SITELIBDIR%%/Bio/Graphics/Distribution.pyo +%%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py +%%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram/_AbstractDrawer.pyc +%%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram/_AbstractDrawer.pyo +%%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram/_CircularDrawer.py +%%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram/_CircularDrawer.pyc +%%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram/_CircularDrawer.pyo +%%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram/_Colors.py +%%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram/_Colors.pyc +%%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram/_Colors.pyo +%%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram/_Diagram.py +%%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram/_Diagram.pyc +%%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram/_Diagram.pyo +%%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram/_Feature.py +%%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram/_Feature.pyc +%%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram/_Feature.pyo +%%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram/_FeatureSet.py +%%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram/_FeatureSet.pyc +%%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram/_FeatureSet.pyo +%%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram/_Graph.py +%%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram/_Graph.pyc +%%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram/_Graph.pyo +%%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram/_GraphSet.py +%%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram/_GraphSet.pyc +%%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram/_GraphSet.pyo +%%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram/_LinearDrawer.py +%%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram/_LinearDrawer.pyc +%%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram/_LinearDrawer.pyo +%%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram/_Track.py +%%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram/_Track.pyc +%%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram/_Track.pyo +%%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram/__init__.py +%%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram/__init__.pyc +%%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram/__init__.pyo %%PYTHON_SITELIBDIR%%/Bio/Graphics/__init__.py %%PYTHON_SITELIBDIR%%/Bio/Graphics/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/Graphics/__init__.pyo @@ -457,21 +511,9 @@ %%PYTHON_SITELIBDIR%%/Bio/Index.py %%PYTHON_SITELIBDIR%%/Bio/Index.pyc %%PYTHON_SITELIBDIR%%/Bio/Index.pyo -%%PYTHON_SITELIBDIR%%/Bio/IntelliGenetics/Record.py -%%PYTHON_SITELIBDIR%%/Bio/IntelliGenetics/Record.pyc -%%PYTHON_SITELIBDIR%%/Bio/IntelliGenetics/Record.pyo -%%PYTHON_SITELIBDIR%%/Bio/IntelliGenetics/__init__.py -%%PYTHON_SITELIBDIR%%/Bio/IntelliGenetics/__init__.pyc -%%PYTHON_SITELIBDIR%%/Bio/IntelliGenetics/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/IntelliGenetics/intelligenetics_format.py -%%PYTHON_SITELIBDIR%%/Bio/IntelliGenetics/intelligenetics_format.pyc -%%PYTHON_SITELIBDIR%%/Bio/IntelliGenetics/intelligenetics_format.pyo %%PYTHON_SITELIBDIR%%/Bio/InterPro/__init__.py %%PYTHON_SITELIBDIR%%/Bio/InterPro/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/InterPro/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/KDTree/CKDTree.py -%%PYTHON_SITELIBDIR%%/Bio/KDTree/CKDTree.pyc -%%PYTHON_SITELIBDIR%%/Bio/KDTree/CKDTree.pyo %%PYTHON_SITELIBDIR%%/Bio/KDTree/KDTree.py %%PYTHON_SITELIBDIR%%/Bio/KDTree/KDTree.pyc %%PYTHON_SITELIBDIR%%/Bio/KDTree/KDTree.pyo @@ -491,15 +533,6 @@ %%PYTHON_SITELIBDIR%%/Bio/KEGG/__init__.py %%PYTHON_SITELIBDIR%%/Bio/KEGG/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/KEGG/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/LocusLink/__init__.py -%%PYTHON_SITELIBDIR%%/Bio/LocusLink/__init__.pyc -%%PYTHON_SITELIBDIR%%/Bio/LocusLink/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/LocusLink/locus_format.py -%%PYTHON_SITELIBDIR%%/Bio/LocusLink/locus_format.pyc -%%PYTHON_SITELIBDIR%%/Bio/LocusLink/locus_format.pyo -%%PYTHON_SITELIBDIR%%/Bio/LocusLink/web_parse.py -%%PYTHON_SITELIBDIR%%/Bio/LocusLink/web_parse.pyc -%%PYTHON_SITELIBDIR%%/Bio/LocusLink/web_parse.pyo %%PYTHON_SITELIBDIR%%/Bio/LogisticRegression.py %%PYTHON_SITELIBDIR%%/Bio/LogisticRegression.pyc %%PYTHON_SITELIBDIR%%/Bio/LogisticRegression.pyo @@ -521,54 +554,31 @@ %%PYTHON_SITELIBDIR%%/Bio/Medline/__init__.py %%PYTHON_SITELIBDIR%%/Bio/Medline/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/Medline/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/MetaTool/Input.py -%%PYTHON_SITELIBDIR%%/Bio/MetaTool/Input.pyc -%%PYTHON_SITELIBDIR%%/Bio/MetaTool/Input.pyo -%%PYTHON_SITELIBDIR%%/Bio/MetaTool/Record.py -%%PYTHON_SITELIBDIR%%/Bio/MetaTool/Record.pyc -%%PYTHON_SITELIBDIR%%/Bio/MetaTool/Record.pyo -%%PYTHON_SITELIBDIR%%/Bio/MetaTool/__init__.py -%%PYTHON_SITELIBDIR%%/Bio/MetaTool/__init__.pyc -%%PYTHON_SITELIBDIR%%/Bio/MetaTool/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/MetaTool/metatool_format.py -%%PYTHON_SITELIBDIR%%/Bio/MetaTool/metatool_format.pyc -%%PYTHON_SITELIBDIR%%/Bio/MetaTool/metatool_format.pyo -%%PYTHON_SITELIBDIR%%/Bio/Mindy/BaseDB.py -%%PYTHON_SITELIBDIR%%/Bio/Mindy/BaseDB.pyc -%%PYTHON_SITELIBDIR%%/Bio/Mindy/BaseDB.pyo -%%PYTHON_SITELIBDIR%%/Bio/Mindy/BerkeleyDB.py -%%PYTHON_SITELIBDIR%%/Bio/Mindy/BerkeleyDB.pyc -%%PYTHON_SITELIBDIR%%/Bio/Mindy/BerkeleyDB.pyo -%%PYTHON_SITELIBDIR%%/Bio/Mindy/FlatDB.py -%%PYTHON_SITELIBDIR%%/Bio/Mindy/FlatDB.pyc -%%PYTHON_SITELIBDIR%%/Bio/Mindy/FlatDB.pyo -%%PYTHON_SITELIBDIR%%/Bio/Mindy/Location.py -%%PYTHON_SITELIBDIR%%/Bio/Mindy/Location.pyc -%%PYTHON_SITELIBDIR%%/Bio/Mindy/Location.pyo -%%PYTHON_SITELIBDIR%%/Bio/Mindy/SimpleSeqRecord.py -%%PYTHON_SITELIBDIR%%/Bio/Mindy/SimpleSeqRecord.pyc -%%PYTHON_SITELIBDIR%%/Bio/Mindy/SimpleSeqRecord.pyo -%%PYTHON_SITELIBDIR%%/Bio/Mindy/XPath.py -%%PYTHON_SITELIBDIR%%/Bio/Mindy/XPath.pyc -%%PYTHON_SITELIBDIR%%/Bio/Mindy/XPath.pyo -%%PYTHON_SITELIBDIR%%/Bio/Mindy/__init__.py -%%PYTHON_SITELIBDIR%%/Bio/Mindy/__init__.pyc -%%PYTHON_SITELIBDIR%%/Bio/Mindy/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/Mindy/compression.py -%%PYTHON_SITELIBDIR%%/Bio/Mindy/compression.pyc -%%PYTHON_SITELIBDIR%%/Bio/Mindy/compression.pyo -%%PYTHON_SITELIBDIR%%/Bio/NBRF/Record.py -%%PYTHON_SITELIBDIR%%/Bio/NBRF/Record.pyc -%%PYTHON_SITELIBDIR%%/Bio/NBRF/Record.pyo -%%PYTHON_SITELIBDIR%%/Bio/NBRF/ValSeq.py -%%PYTHON_SITELIBDIR%%/Bio/NBRF/ValSeq.pyc -%%PYTHON_SITELIBDIR%%/Bio/NBRF/ValSeq.pyo -%%PYTHON_SITELIBDIR%%/Bio/NBRF/__init__.py -%%PYTHON_SITELIBDIR%%/Bio/NBRF/__init__.pyc -%%PYTHON_SITELIBDIR%%/Bio/NBRF/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/NBRF/nbrf_format.py -%%PYTHON_SITELIBDIR%%/Bio/NBRF/nbrf_format.pyc -%%PYTHON_SITELIBDIR%%/Bio/NBRF/nbrf_format.pyo +%%PYTHON_SITELIBDIR%%/Bio/Motif/Applications/_AlignAce.py +%%PYTHON_SITELIBDIR%%/Bio/Motif/Applications/_AlignAce.pyc +%%PYTHON_SITELIBDIR%%/Bio/Motif/Applications/_AlignAce.pyo +%%PYTHON_SITELIBDIR%%/Bio/Motif/Applications/__init__.py +%%PYTHON_SITELIBDIR%%/Bio/Motif/Applications/__init__.pyc +%%PYTHON_SITELIBDIR%%/Bio/Motif/Applications/__init__.pyo +%%PYTHON_SITELIBDIR%%/Bio/Motif/Parsers/AlignAce.py +%%PYTHON_SITELIBDIR%%/Bio/Motif/Parsers/AlignAce.pyc +%%PYTHON_SITELIBDIR%%/Bio/Motif/Parsers/AlignAce.pyo +%%PYTHON_SITELIBDIR%%/Bio/Motif/Parsers/MEME.py +%%PYTHON_SITELIBDIR%%/Bio/Motif/Parsers/MEME.pyc +%%PYTHON_SITELIBDIR%%/Bio/Motif/Parsers/MEME.pyo +%%PYTHON_SITELIBDIR%%/Bio/Motif/Parsers/__init__.py +%%PYTHON_SITELIBDIR%%/Bio/Motif/Parsers/__init__.pyc +%%PYTHON_SITELIBDIR%%/Bio/Motif/Parsers/__init__.pyo +%%PYTHON_SITELIBDIR%%/Bio/Motif/Thresholds.py +%%PYTHON_SITELIBDIR%%/Bio/Motif/Thresholds.pyc +%%PYTHON_SITELIBDIR%%/Bio/Motif/Thresholds.pyo +%%PYTHON_SITELIBDIR%%/Bio/Motif/_Motif.py +%%PYTHON_SITELIBDIR%%/Bio/Motif/_Motif.pyc +%%PYTHON_SITELIBDIR%%/Bio/Motif/_Motif.pyo +%%PYTHON_SITELIBDIR%%/Bio/Motif/__init__.py +%%PYTHON_SITELIBDIR%%/Bio/Motif/__init__.pyc +%%PYTHON_SITELIBDIR%%/Bio/Motif/__init__.pyo +%%PYTHON_SITELIBDIR%%/Bio/Motif/_pwm.so %%PYTHON_SITELIBDIR%%/Bio/NMR/NOEtools.py %%PYTHON_SITELIBDIR%%/Bio/NMR/NOEtools.pyc %%PYTHON_SITELIBDIR%%/Bio/NMR/NOEtools.pyo @@ -747,9 +757,6 @@ %%PYTHON_SITELIBDIR%%/Bio/Pathway/__init__.py %%PYTHON_SITELIBDIR%%/Bio/Pathway/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/Pathway/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/PopGen/__init__.py -%%PYTHON_SITELIBDIR%%/Bio/PopGen/__init__.pyc -%%PYTHON_SITELIBDIR%%/Bio/PopGen/__init__.pyo %%PYTHON_SITELIBDIR%%/Bio/PopGen/Async/Local.py %%PYTHON_SITELIBDIR%%/Bio/PopGen/Async/Local.pyc %%PYTHON_SITELIBDIR%%/Bio/PopGen/Async/Local.pyo @@ -799,6 +806,9 @@ %%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal/data/split_ssm_2d.par %%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal/data/ssm_1d.par %%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal/data/ssm_2d.par +%%PYTHON_SITELIBDIR%%/Bio/PopGen/__init__.py +%%PYTHON_SITELIBDIR%%/Bio/PopGen/__init__.pyc +%%PYTHON_SITELIBDIR%%/Bio/PopGen/__init__.pyo %%PYTHON_SITELIBDIR%%/Bio/PropertyManager.py %%PYTHON_SITELIBDIR%%/Bio/PropertyManager.pyc %%PYTHON_SITELIBDIR%%/Bio/PropertyManager.pyo @@ -814,9 +824,6 @@ %%PYTHON_SITELIBDIR%%/Bio/PubMed.py %%PYTHON_SITELIBDIR%%/Bio/PubMed.pyc %%PYTHON_SITELIBDIR%%/Bio/PubMed.pyo -%%PYTHON_SITELIBDIR%%/Bio/Rebase/__init__.py -%%PYTHON_SITELIBDIR%%/Bio/Rebase/__init__.pyc -%%PYTHON_SITELIBDIR%%/Bio/Rebase/__init__.pyo %%PYTHON_SITELIBDIR%%/Bio/Restriction/DNAUtils.so %%PYTHON_SITELIBDIR%%/Bio/Restriction/PrintFormat.py %%PYTHON_SITELIBDIR%%/Bio/Restriction/PrintFormat.pyc @@ -866,24 +873,12 @@ %%PYTHON_SITELIBDIR%%/Bio/SCOP/__init__.py %%PYTHON_SITELIBDIR%%/Bio/SCOP/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/SCOP/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/SGMLExtractor.py -%%PYTHON_SITELIBDIR%%/Bio/SGMLExtractor.pyc -%%PYTHON_SITELIBDIR%%/Bio/SGMLExtractor.pyo %%PYTHON_SITELIBDIR%%/Bio/SVDSuperimposer/SVDSuperimposer.py %%PYTHON_SITELIBDIR%%/Bio/SVDSuperimposer/SVDSuperimposer.pyc %%PYTHON_SITELIBDIR%%/Bio/SVDSuperimposer/SVDSuperimposer.pyo %%PYTHON_SITELIBDIR%%/Bio/SVDSuperimposer/__init__.py %%PYTHON_SITELIBDIR%%/Bio/SVDSuperimposer/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/SVDSuperimposer/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/Saf/Record.py -%%PYTHON_SITELIBDIR%%/Bio/Saf/Record.pyc -%%PYTHON_SITELIBDIR%%/Bio/Saf/Record.pyo -%%PYTHON_SITELIBDIR%%/Bio/Saf/__init__.py -%%PYTHON_SITELIBDIR%%/Bio/Saf/__init__.pyc -%%PYTHON_SITELIBDIR%%/Bio/Saf/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/Saf/saf_format.py -%%PYTHON_SITELIBDIR%%/Bio/Saf/saf_format.pyc -%%PYTHON_SITELIBDIR%%/Bio/Saf/saf_format.pyo %%PYTHON_SITELIBDIR%%/Bio/Search.py %%PYTHON_SITELIBDIR%%/Bio/Search.pyc %%PYTHON_SITELIBDIR%%/Bio/Search.pyo @@ -896,9 +891,6 @@ %%PYTHON_SITELIBDIR%%/Bio/SeqIO/AceIO.py %%PYTHON_SITELIBDIR%%/Bio/SeqIO/AceIO.pyc %%PYTHON_SITELIBDIR%%/Bio/SeqIO/AceIO.pyo -%%PYTHON_SITELIBDIR%%/Bio/SeqIO/ClustalIO.py -%%PYTHON_SITELIBDIR%%/Bio/SeqIO/ClustalIO.pyc -%%PYTHON_SITELIBDIR%%/Bio/SeqIO/ClustalIO.pyo %%PYTHON_SITELIBDIR%%/Bio/SeqIO/FastaIO.py %%PYTHON_SITELIBDIR%%/Bio/SeqIO/FastaIO.pyc %%PYTHON_SITELIBDIR%%/Bio/SeqIO/FastaIO.pyo @@ -911,21 +903,15 @@ %%PYTHON_SITELIBDIR%%/Bio/SeqIO/Interfaces.py %%PYTHON_SITELIBDIR%%/Bio/SeqIO/Interfaces.pyc %%PYTHON_SITELIBDIR%%/Bio/SeqIO/Interfaces.pyo -%%PYTHON_SITELIBDIR%%/Bio/SeqIO/NexusIO.py -%%PYTHON_SITELIBDIR%%/Bio/SeqIO/NexusIO.pyc -%%PYTHON_SITELIBDIR%%/Bio/SeqIO/NexusIO.pyo %%PYTHON_SITELIBDIR%%/Bio/SeqIO/PhdIO.py %%PYTHON_SITELIBDIR%%/Bio/SeqIO/PhdIO.pyc %%PYTHON_SITELIBDIR%%/Bio/SeqIO/PhdIO.pyo -%%PYTHON_SITELIBDIR%%/Bio/SeqIO/PhylipIO.py -%%PYTHON_SITELIBDIR%%/Bio/SeqIO/PhylipIO.pyc -%%PYTHON_SITELIBDIR%%/Bio/SeqIO/PhylipIO.pyo %%PYTHON_SITELIBDIR%%/Bio/SeqIO/PirIO.py %%PYTHON_SITELIBDIR%%/Bio/SeqIO/PirIO.pyc %%PYTHON_SITELIBDIR%%/Bio/SeqIO/PirIO.pyo -%%PYTHON_SITELIBDIR%%/Bio/SeqIO/StockholmIO.py -%%PYTHON_SITELIBDIR%%/Bio/SeqIO/StockholmIO.pyc -%%PYTHON_SITELIBDIR%%/Bio/SeqIO/StockholmIO.pyo +%%PYTHON_SITELIBDIR%%/Bio/SeqIO/QualityIO.py +%%PYTHON_SITELIBDIR%%/Bio/SeqIO/QualityIO.pyc +%%PYTHON_SITELIBDIR%%/Bio/SeqIO/QualityIO.pyo %%PYTHON_SITELIBDIR%%/Bio/SeqIO/SwissIO.py %%PYTHON_SITELIBDIR%%/Bio/SeqIO/SwissIO.pyc %%PYTHON_SITELIBDIR%%/Bio/SeqIO/SwissIO.pyo @@ -941,9 +927,6 @@ %%PYTHON_SITELIBDIR%%/Bio/SeqUtils/CheckSum.py %%PYTHON_SITELIBDIR%%/Bio/SeqUtils/CheckSum.pyc %%PYTHON_SITELIBDIR%%/Bio/SeqUtils/CheckSum.pyo -%%PYTHON_SITELIBDIR%%/Bio/SeqUtils/lcc.py -%%PYTHON_SITELIBDIR%%/Bio/SeqUtils/lcc.pyc -%%PYTHON_SITELIBDIR%%/Bio/SeqUtils/lcc.pyo %%PYTHON_SITELIBDIR%%/Bio/SeqUtils/CodonUsage.py %%PYTHON_SITELIBDIR%%/Bio/SeqUtils/CodonUsage.pyc %%PYTHON_SITELIBDIR%%/Bio/SeqUtils/CodonUsage.pyo @@ -965,6 +948,9 @@ %%PYTHON_SITELIBDIR%%/Bio/SeqUtils/__init__.py %%PYTHON_SITELIBDIR%%/Bio/SeqUtils/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/SeqUtils/__init__.pyo +%%PYTHON_SITELIBDIR%%/Bio/SeqUtils/lcc.py +%%PYTHON_SITELIBDIR%%/Bio/SeqUtils/lcc.pyc +%%PYTHON_SITELIBDIR%%/Bio/SeqUtils/lcc.pyo %%PYTHON_SITELIBDIR%%/Bio/Sequencing/Ace.py %%PYTHON_SITELIBDIR%%/Bio/Sequencing/Ace.pyc %%PYTHON_SITELIBDIR%%/Bio/Sequencing/Ace.pyo @@ -980,12 +966,6 @@ %%PYTHON_SITELIBDIR%%/Bio/Statistics/lowess.py %%PYTHON_SITELIBDIR%%/Bio/Statistics/lowess.pyc %%PYTHON_SITELIBDIR%%/Bio/Statistics/lowess.pyo -%%PYTHON_SITELIBDIR%%/Bio/Std.py -%%PYTHON_SITELIBDIR%%/Bio/Std.pyc -%%PYTHON_SITELIBDIR%%/Bio/Std.pyo -%%PYTHON_SITELIBDIR%%/Bio/StdHandler.py -%%PYTHON_SITELIBDIR%%/Bio/StdHandler.pyc -%%PYTHON_SITELIBDIR%%/Bio/StdHandler.pyo %%PYTHON_SITELIBDIR%%/Bio/SubsMat/FreqTable.py %%PYTHON_SITELIBDIR%%/Bio/SubsMat/FreqTable.pyc %%PYTHON_SITELIBDIR%%/Bio/SubsMat/FreqTable.pyo @@ -1025,159 +1005,17 @@ %%PYTHON_SITELIBDIR%%/Bio/Wise/psw.py %%PYTHON_SITELIBDIR%%/Bio/Wise/psw.pyc %%PYTHON_SITELIBDIR%%/Bio/Wise/psw.pyo -%%PYTHON_SITELIBDIR%%/Bio/Writer.py -%%PYTHON_SITELIBDIR%%/Bio/Writer.pyc -%%PYTHON_SITELIBDIR%%/Bio/Writer.pyo %%PYTHON_SITELIBDIR%%/Bio/__init__.py %%PYTHON_SITELIBDIR%%/Bio/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/builders/Search/__init__.py -%%PYTHON_SITELIBDIR%%/Bio/builders/Search/__init__.pyc -%%PYTHON_SITELIBDIR%%/Bio/builders/Search/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/builders/Search/search.py -%%PYTHON_SITELIBDIR%%/Bio/builders/Search/search.pyc -%%PYTHON_SITELIBDIR%%/Bio/builders/Search/search.pyo -%%PYTHON_SITELIBDIR%%/Bio/builders/SeqRecord/__init__.py -%%PYTHON_SITELIBDIR%%/Bio/builders/SeqRecord/__init__.pyc -%%PYTHON_SITELIBDIR%%/Bio/builders/SeqRecord/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/builders/SeqRecord/sequence.py -%%PYTHON_SITELIBDIR%%/Bio/builders/SeqRecord/sequence.pyc -%%PYTHON_SITELIBDIR%%/Bio/builders/SeqRecord/sequence.pyo -%%PYTHON_SITELIBDIR%%/Bio/builders/__init__.py -%%PYTHON_SITELIBDIR%%/Bio/builders/__init__.pyc -%%PYTHON_SITELIBDIR%%/Bio/builders/__init__.pyo %%PYTHON_SITELIBDIR%%/Bio/cMarkovModel.so -%%PYTHON_SITELIBDIR%%/Bio/cdistance.so %%PYTHON_SITELIBDIR%%/Bio/clistfns.so %%PYTHON_SITELIBDIR%%/Bio/cmathfns.so -%%PYTHON_SITELIBDIR%%/Bio/config/DBRegistry.py -%%PYTHON_SITELIBDIR%%/Bio/config/DBRegistry.pyc -%%PYTHON_SITELIBDIR%%/Bio/config/DBRegistry.pyo -%%PYTHON_SITELIBDIR%%/Bio/config/FormatRegistry.py -%%PYTHON_SITELIBDIR%%/Bio/config/FormatRegistry.pyc -%%PYTHON_SITELIBDIR%%/Bio/config/FormatRegistry.pyo -%%PYTHON_SITELIBDIR%%/Bio/config/Registry.py -%%PYTHON_SITELIBDIR%%/Bio/config/Registry.pyc -%%PYTHON_SITELIBDIR%%/Bio/config/Registry.pyo -%%PYTHON_SITELIBDIR%%/Bio/config/SeqDBRegistry.py -%%PYTHON_SITELIBDIR%%/Bio/config/SeqDBRegistry.pyc -%%PYTHON_SITELIBDIR%%/Bio/config/SeqDBRegistry.pyo -%%PYTHON_SITELIBDIR%%/Bio/config/__init__.py -%%PYTHON_SITELIBDIR%%/Bio/config/__init__.pyc -%%PYTHON_SITELIBDIR%%/Bio/config/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/config/_stanzaformat.py -%%PYTHON_SITELIBDIR%%/Bio/config/_stanzaformat.pyc -%%PYTHON_SITELIBDIR%%/Bio/config/_stanzaformat.pyo -%%PYTHON_SITELIBDIR%%/Bio/config/_support.py -%%PYTHON_SITELIBDIR%%/Bio/config/_support.pyc -%%PYTHON_SITELIBDIR%%/Bio/config/_support.pyo %%PYTHON_SITELIBDIR%%/Bio/cpairwise2.so %%PYTHON_SITELIBDIR%%/Bio/cstringfns.so -%%PYTHON_SITELIBDIR%%/Bio/dbdefs/__init__.py -%%PYTHON_SITELIBDIR%%/Bio/dbdefs/__init__.pyc -%%PYTHON_SITELIBDIR%%/Bio/dbdefs/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/dbdefs/_support.py -%%PYTHON_SITELIBDIR%%/Bio/dbdefs/_support.pyc -%%PYTHON_SITELIBDIR%%/Bio/dbdefs/_support.pyo -%%PYTHON_SITELIBDIR%%/Bio/dbdefs/embl.py -%%PYTHON_SITELIBDIR%%/Bio/dbdefs/embl.pyc -%%PYTHON_SITELIBDIR%%/Bio/dbdefs/embl.pyo -%%PYTHON_SITELIBDIR%%/Bio/dbdefs/fasta.py -%%PYTHON_SITELIBDIR%%/Bio/dbdefs/fasta.pyc -%%PYTHON_SITELIBDIR%%/Bio/dbdefs/fasta.pyo -%%PYTHON_SITELIBDIR%%/Bio/dbdefs/genbank.py -%%PYTHON_SITELIBDIR%%/Bio/dbdefs/genbank.pyc -%%PYTHON_SITELIBDIR%%/Bio/dbdefs/genbank.pyo -%%PYTHON_SITELIBDIR%%/Bio/dbdefs/interpro.py -%%PYTHON_SITELIBDIR%%/Bio/dbdefs/interpro.pyc -%%PYTHON_SITELIBDIR%%/Bio/dbdefs/interpro.pyo -%%PYTHON_SITELIBDIR%%/Bio/dbdefs/medline.py -%%PYTHON_SITELIBDIR%%/Bio/dbdefs/medline.pyc -%%PYTHON_SITELIBDIR%%/Bio/dbdefs/medline.pyo -%%PYTHON_SITELIBDIR%%/Bio/dbdefs/pdb.py -%%PYTHON_SITELIBDIR%%/Bio/dbdefs/pdb.pyc -%%PYTHON_SITELIBDIR%%/Bio/dbdefs/pdb.pyo -%%PYTHON_SITELIBDIR%%/Bio/dbdefs/prodoc.py -%%PYTHON_SITELIBDIR%%/Bio/dbdefs/prodoc.pyc -%%PYTHON_SITELIBDIR%%/Bio/dbdefs/prodoc.pyo -%%PYTHON_SITELIBDIR%%/Bio/dbdefs/prosite.py -%%PYTHON_SITELIBDIR%%/Bio/dbdefs/prosite.pyc -%%PYTHON_SITELIBDIR%%/Bio/dbdefs/prosite.pyo -%%PYTHON_SITELIBDIR%%/Bio/dbdefs/swissprot.py -%%PYTHON_SITELIBDIR%%/Bio/dbdefs/swissprot.pyc -%%PYTHON_SITELIBDIR%%/Bio/dbdefs/swissprot.pyo %%PYTHON_SITELIBDIR%%/Bio/distance.py %%PYTHON_SITELIBDIR%%/Bio/distance.pyc %%PYTHON_SITELIBDIR%%/Bio/distance.pyo -%%PYTHON_SITELIBDIR%%/Bio/expressions/__init__.py -%%PYTHON_SITELIBDIR%%/Bio/expressions/__init__.pyc -%%PYTHON_SITELIBDIR%%/Bio/expressions/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/expressions/blast/__init__.py -%%PYTHON_SITELIBDIR%%/Bio/expressions/blast/__init__.pyc -%%PYTHON_SITELIBDIR%%/Bio/expressions/blast/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/expressions/blast/ncbiblast.py -%%PYTHON_SITELIBDIR%%/Bio/expressions/blast/ncbiblast.pyc -%%PYTHON_SITELIBDIR%%/Bio/expressions/blast/ncbiblast.pyo -%%PYTHON_SITELIBDIR%%/Bio/expressions/blast/wublast.py -%%PYTHON_SITELIBDIR%%/Bio/expressions/blast/wublast.pyc -%%PYTHON_SITELIBDIR%%/Bio/expressions/blast/wublast.pyo -%%PYTHON_SITELIBDIR%%/Bio/expressions/blocks.py -%%PYTHON_SITELIBDIR%%/Bio/expressions/blocks.pyc -%%PYTHON_SITELIBDIR%%/Bio/expressions/blocks.pyo -%%PYTHON_SITELIBDIR%%/Bio/expressions/embl/__init__.py -%%PYTHON_SITELIBDIR%%/Bio/expressions/embl/__init__.pyc -%%PYTHON_SITELIBDIR%%/Bio/expressions/embl/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/expressions/embl/embl65.py -%%PYTHON_SITELIBDIR%%/Bio/expressions/embl/embl65.pyc -%%PYTHON_SITELIBDIR%%/Bio/expressions/embl/embl65.pyo -%%PYTHON_SITELIBDIR%%/Bio/expressions/fasta.py -%%PYTHON_SITELIBDIR%%/Bio/expressions/fasta.pyc -%%PYTHON_SITELIBDIR%%/Bio/expressions/fasta.pyo -%%PYTHON_SITELIBDIR%%/Bio/expressions/genbank.py -%%PYTHON_SITELIBDIR%%/Bio/expressions/genbank.pyc -%%PYTHON_SITELIBDIR%%/Bio/expressions/genbank.pyo -%%PYTHON_SITELIBDIR%%/Bio/expressions/hmmpfam.py -%%PYTHON_SITELIBDIR%%/Bio/expressions/hmmpfam.pyc -%%PYTHON_SITELIBDIR%%/Bio/expressions/hmmpfam.pyo -%%PYTHON_SITELIBDIR%%/Bio/expressions/swissprot/__init__.py -%%PYTHON_SITELIBDIR%%/Bio/expressions/swissprot/__init__.pyc -%%PYTHON_SITELIBDIR%%/Bio/expressions/swissprot/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/expressions/swissprot/ipi.py -%%PYTHON_SITELIBDIR%%/Bio/expressions/swissprot/ipi.pyc -%%PYTHON_SITELIBDIR%%/Bio/expressions/swissprot/ipi.pyo -%%PYTHON_SITELIBDIR%%/Bio/expressions/swissprot/speclist.py -%%PYTHON_SITELIBDIR%%/Bio/expressions/swissprot/speclist.pyc -%%PYTHON_SITELIBDIR%%/Bio/expressions/swissprot/speclist.pyo -%%PYTHON_SITELIBDIR%%/Bio/expressions/swissprot/sprot38.py -%%PYTHON_SITELIBDIR%%/Bio/expressions/swissprot/sprot38.pyc -%%PYTHON_SITELIBDIR%%/Bio/expressions/swissprot/sprot38.pyo -%%PYTHON_SITELIBDIR%%/Bio/expressions/swissprot/sprot40.py -%%PYTHON_SITELIBDIR%%/Bio/expressions/swissprot/sprot40.pyc -%%PYTHON_SITELIBDIR%%/Bio/expressions/swissprot/sprot40.pyo -%%PYTHON_SITELIBDIR%%/Bio/expressions/transfac.py -%%PYTHON_SITELIBDIR%%/Bio/expressions/transfac.pyc -%%PYTHON_SITELIBDIR%%/Bio/expressions/transfac.pyo -%%PYTHON_SITELIBDIR%%/Bio/formatdefs/__init__.py -%%PYTHON_SITELIBDIR%%/Bio/formatdefs/__init__.pyc -%%PYTHON_SITELIBDIR%%/Bio/formatdefs/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/formatdefs/embl.py -%%PYTHON_SITELIBDIR%%/Bio/formatdefs/embl.pyc -%%PYTHON_SITELIBDIR%%/Bio/formatdefs/embl.pyo -%%PYTHON_SITELIBDIR%%/Bio/formatdefs/genbank.py -%%PYTHON_SITELIBDIR%%/Bio/formatdefs/genbank.pyc -%%PYTHON_SITELIBDIR%%/Bio/formatdefs/genbank.pyo -%%PYTHON_SITELIBDIR%%/Bio/formatdefs/search.py -%%PYTHON_SITELIBDIR%%/Bio/formatdefs/search.pyc -%%PYTHON_SITELIBDIR%%/Bio/formatdefs/search.pyo -%%PYTHON_SITELIBDIR%%/Bio/formatdefs/sequence.py -%%PYTHON_SITELIBDIR%%/Bio/formatdefs/sequence.pyc -%%PYTHON_SITELIBDIR%%/Bio/formatdefs/sequence.pyo -%%PYTHON_SITELIBDIR%%/Bio/formatdefs/swissprot.py -%%PYTHON_SITELIBDIR%%/Bio/formatdefs/swissprot.pyc -%%PYTHON_SITELIBDIR%%/Bio/formatdefs/swissprot.pyo -%%PYTHON_SITELIBDIR%%/Bio/ExPASy.py -%%PYTHON_SITELIBDIR%%/Bio/ExPASy.pyc -%%PYTHON_SITELIBDIR%%/Bio/ExPASy.pyo %%PYTHON_SITELIBDIR%%/Bio/kNN.py %%PYTHON_SITELIBDIR%%/Bio/kNN.pyc %%PYTHON_SITELIBDIR%%/Bio/kNN.pyo @@ -1200,83 +1038,8 @@ %%PYTHON_SITELIBDIR%%/Bio/utils.py %%PYTHON_SITELIBDIR%%/Bio/utils.pyc %%PYTHON_SITELIBDIR%%/Bio/utils.pyo -%%PYTHON_SITELIBDIR%%/Bio/writers/SeqRecord/__init__.py -%%PYTHON_SITELIBDIR%%/Bio/writers/SeqRecord/__init__.pyc -%%PYTHON_SITELIBDIR%%/Bio/writers/SeqRecord/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/writers/SeqRecord/embl.py -%%PYTHON_SITELIBDIR%%/Bio/writers/SeqRecord/embl.pyc -%%PYTHON_SITELIBDIR%%/Bio/writers/SeqRecord/embl.pyo -%%PYTHON_SITELIBDIR%%/Bio/writers/SeqRecord/empty.py -%%PYTHON_SITELIBDIR%%/Bio/writers/SeqRecord/empty.pyc -%%PYTHON_SITELIBDIR%%/Bio/writers/SeqRecord/empty.pyo -%%PYTHON_SITELIBDIR%%/Bio/writers/SeqRecord/fasta.py -%%PYTHON_SITELIBDIR%%/Bio/writers/SeqRecord/fasta.pyc -%%PYTHON_SITELIBDIR%%/Bio/writers/SeqRecord/fasta.pyo -%%PYTHON_SITELIBDIR%%/Bio/writers/__init__.py -%%PYTHON_SITELIBDIR%%/Bio/writers/__init__.pyc -%%PYTHON_SITELIBDIR%%/Bio/writers/__init__.pyo -%%PYTHON_SITELIBDIR%%/BioSQL/BioSeq.py -%%PYTHON_SITELIBDIR%%/BioSQL/BioSeq.pyc -%%PYTHON_SITELIBDIR%%/BioSQL/BioSeq.pyo -%%PYTHON_SITELIBDIR%%/BioSQL/BioSeqDatabase.py -%%PYTHON_SITELIBDIR%%/BioSQL/BioSeqDatabase.pyc -%%PYTHON_SITELIBDIR%%/BioSQL/BioSeqDatabase.pyo -%%PYTHON_SITELIBDIR%%/BioSQL/DBUtils.py -%%PYTHON_SITELIBDIR%%/BioSQL/DBUtils.pyc -%%PYTHON_SITELIBDIR%%/BioSQL/DBUtils.pyo -%%PYTHON_SITELIBDIR%%/BioSQL/Loader.py -%%PYTHON_SITELIBDIR%%/BioSQL/Loader.pyc -%%PYTHON_SITELIBDIR%%/BioSQL/Loader.pyo -%%PYTHON_SITELIBDIR%%/BioSQL/__init__.py -%%PYTHON_SITELIBDIR%%/BioSQL/__init__.pyc -%%PYTHON_SITELIBDIR%%/BioSQL/__init__.pyo -%%PYTHON_SITELIBDIR%%/Martel/Dispatch.py -%%PYTHON_SITELIBDIR%%/Martel/Dispatch.pyc -%%PYTHON_SITELIBDIR%%/Martel/Dispatch.pyo -%%PYTHON_SITELIBDIR%%/Martel/Expression.py -%%PYTHON_SITELIBDIR%%/Martel/Expression.pyc -%%PYTHON_SITELIBDIR%%/Martel/Expression.pyo -%%PYTHON_SITELIBDIR%%/Martel/Generate.py -%%PYTHON_SITELIBDIR%%/Martel/Generate.pyc -%%PYTHON_SITELIBDIR%%/Martel/Generate.pyo -%%PYTHON_SITELIBDIR%%/Martel/IterParser.py -%%PYTHON_SITELIBDIR%%/Martel/IterParser.pyc -%%PYTHON_SITELIBDIR%%/Martel/IterParser.pyo -%%PYTHON_SITELIBDIR%%/Martel/Iterator.py -%%PYTHON_SITELIBDIR%%/Martel/Iterator.pyc -%%PYTHON_SITELIBDIR%%/Martel/Iterator.pyo -%%PYTHON_SITELIBDIR%%/Martel/LAX.py -%%PYTHON_SITELIBDIR%%/Martel/LAX.pyc -%%PYTHON_SITELIBDIR%%/Martel/LAX.pyo -%%PYTHON_SITELIBDIR%%/Martel/Parser.py -%%PYTHON_SITELIBDIR%%/Martel/Parser.pyc -%%PYTHON_SITELIBDIR%%/Martel/Parser.pyo -%%PYTHON_SITELIBDIR%%/Martel/RecordReader.py -%%PYTHON_SITELIBDIR%%/Martel/RecordReader.pyc -%%PYTHON_SITELIBDIR%%/Martel/RecordReader.pyo -%%PYTHON_SITELIBDIR%%/Martel/Time.py -%%PYTHON_SITELIBDIR%%/Martel/Time.pyc -%%PYTHON_SITELIBDIR%%/Martel/Time.pyo -%%PYTHON_SITELIBDIR%%/Martel/__init__.py -%%PYTHON_SITELIBDIR%%/Martel/__init__.pyc -%%PYTHON_SITELIBDIR%%/Martel/__init__.pyo -%%PYTHON_SITELIBDIR%%/Martel/convert_re.py -%%PYTHON_SITELIBDIR%%/Martel/convert_re.pyc -%%PYTHON_SITELIBDIR%%/Martel/convert_re.pyo -%%PYTHON_SITELIBDIR%%/Martel/msre_constants.py -%%PYTHON_SITELIBDIR%%/Martel/msre_constants.pyc -%%PYTHON_SITELIBDIR%%/Martel/msre_constants.pyo -%%PYTHON_SITELIBDIR%%/Martel/msre_parse.py -%%PYTHON_SITELIBDIR%%/Martel/msre_parse.pyc -%%PYTHON_SITELIBDIR%%/Martel/msre_parse.pyo -%%PYTHON_SITELIBDIR%%/Martel/optimize.py -%%PYTHON_SITELIBDIR%%/Martel/optimize.pyc -%%PYTHON_SITELIBDIR%%/Martel/optimize.pyo -%%PYTHON_SITELIBDIR%%/Martel/setup.py -%%PYTHON_SITELIBDIR%%/Martel/setup.pyc -%%PYTHON_SITELIBDIR%%/Martel/setup.pyo @dirrm %%PYTHON_SITELIBDIR%%/Bio/Affy -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Ais +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Align/Applications @dirrm %%PYTHON_SITELIBDIR%%/Bio/Align @dirrm %%PYTHON_SITELIBDIR%%/Bio/AlignAce @dirrm %%PYTHON_SITELIBDIR%%/Bio/AlignIO @@ -1284,20 +1047,19 @@ @dirrm %%PYTHON_SITELIBDIR%%/Bio/Application @dirrm %%PYTHON_SITELIBDIR%%/Bio/Blast @dirrm %%PYTHON_SITELIBDIR%%/Bio/CAPS -@dirrm %%PYTHON_SITELIBDIR%%/Bio/CDD @dirrm %%PYTHON_SITELIBDIR%%/Bio/Clustalw @dirrm %%PYTHON_SITELIBDIR%%/Bio/Cluster @dirrm %%PYTHON_SITELIBDIR%%/Bio/Compass @dirrm %%PYTHON_SITELIBDIR%%/Bio/Crystal @dirrm %%PYTHON_SITELIBDIR%%/Bio/Data -@dirrm %%PYTHON_SITELIBDIR%%/Bio/ECell @dirrm %%PYTHON_SITELIBDIR%%/Bio/EUtils/DTDs @dirrm %%PYTHON_SITELIBDIR%%/Bio/EUtils @dirrm %%PYTHON_SITELIBDIR%%/Bio/Emboss @dirrm %%PYTHON_SITELIBDIR%%/Bio/Encodings -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/ +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs @dirrm %%PYTHON_SITELIBDIR%%/Bio/Entrez @dirrm %%PYTHON_SITELIBDIR%%/Bio/Enzyme +@dirrm %%PYTHON_SITELIBDIR%%/Bio/ExPASy @dirrm %%PYTHON_SITELIBDIR%%/Bio/FSSP @dirrm %%PYTHON_SITELIBDIR%%/Bio/Fasta @dirrm %%PYTHON_SITELIBDIR%%/Bio/GA/Crossover @@ -1308,46 +1070,42 @@ @dirrm %%PYTHON_SITELIBDIR%%/Bio/GFF @dirrm %%PYTHON_SITELIBDIR%%/Bio/GenBank @dirrm %%PYTHON_SITELIBDIR%%/Bio/Geo -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Gobase +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram @dirrm %%PYTHON_SITELIBDIR%%/Bio/Graphics @dirrm %%PYTHON_SITELIBDIR%%/Bio/HMM -@dirrm %%PYTHON_SITELIBDIR%%/Bio/IntelliGenetics @dirrm %%PYTHON_SITELIBDIR%%/Bio/InterPro @dirrm %%PYTHON_SITELIBDIR%%/Bio/KDTree @dirrm %%PYTHON_SITELIBDIR%%/Bio/KEGG/Compound @dirrm %%PYTHON_SITELIBDIR%%/Bio/KEGG/Enzyme @dirrm %%PYTHON_SITELIBDIR%%/Bio/KEGG/Map @dirrm %%PYTHON_SITELIBDIR%%/Bio/KEGG -@dirrm %%PYTHON_SITELIBDIR%%/Bio/LocusLink @dirrm %%PYTHON_SITELIBDIR%%/Bio/MEME @dirrm %%PYTHON_SITELIBDIR%%/Bio/Medline -@dirrm %%PYTHON_SITELIBDIR%%/Bio/MetaTool -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Mindy -@dirrm %%PYTHON_SITELIBDIR%%/Bio/NBRF +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Motif/Applications +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Motif/Parsers +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Motif @dirrm %%PYTHON_SITELIBDIR%%/Bio/NMR @dirrm %%PYTHON_SITELIBDIR%%/Bio/Ndb @dirrm %%PYTHON_SITELIBDIR%%/Bio/NeuralNetwork/BackPropagation @dirrm %%PYTHON_SITELIBDIR%%/Bio/NeuralNetwork/Gene @dirrm %%PYTHON_SITELIBDIR%%/Bio/NeuralNetwork @dirrm %%PYTHON_SITELIBDIR%%/Bio/Nexus -@dirrm %%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal/data -@dirrm %%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal -@dirrm %%PYTHON_SITELIBDIR%%/Bio/PopGen/GenePop -@dirrm %%PYTHON_SITELIBDIR%%/Bio/PopGen/FDist -@dirrm %%PYTHON_SITELIBDIR%%/Bio/PopGen/Async -@dirrm %%PYTHON_SITELIBDIR%%/Bio/PopGen @dirrm %%PYTHON_SITELIBDIR%%/Bio/PDB/mmCIF @dirrm %%PYTHON_SITELIBDIR%%/Bio/PDB @dirrm %%PYTHON_SITELIBDIR%%/Bio/Parsers @dirrm %%PYTHON_SITELIBDIR%%/Bio/Pathway/Rep @dirrm %%PYTHON_SITELIBDIR%%/Bio/Pathway +@dirrm %%PYTHON_SITELIBDIR%%/Bio/PopGen/Async +@dirrm %%PYTHON_SITELIBDIR%%/Bio/PopGen/FDist +@dirrm %%PYTHON_SITELIBDIR%%/Bio/PopGen/GenePop +@dirrm %%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal/data +@dirrm %%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal +@dirrm %%PYTHON_SITELIBDIR%%/Bio/PopGen @dirrm %%PYTHON_SITELIBDIR%%/Bio/Prosite -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Rebase @dirrm %%PYTHON_SITELIBDIR%%/Bio/Restriction/_Update @dirrm %%PYTHON_SITELIBDIR%%/Bio/Restriction @dirrm %%PYTHON_SITELIBDIR%%/Bio/SCOP @dirrm %%PYTHON_SITELIBDIR%%/Bio/SVDSuperimposer -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Saf @dirrm %%PYTHON_SITELIBDIR%%/Bio/SeqIO @dirrm %%PYTHON_SITELIBDIR%%/Bio/SeqUtils @dirrm %%PYTHON_SITELIBDIR%%/Bio/Sequencing @@ -1357,18 +1115,4 @@ @dirrm %%PYTHON_SITELIBDIR%%/Bio/UniGene @dirrm %%PYTHON_SITELIBDIR%%/Bio/WWW @dirrm %%PYTHON_SITELIBDIR%%/Bio/Wise -@dirrm %%PYTHON_SITELIBDIR%%/Bio/builders/Search -@dirrm %%PYTHON_SITELIBDIR%%/Bio/builders/SeqRecord -@dirrm %%PYTHON_SITELIBDIR%%/Bio/builders -@dirrm %%PYTHON_SITELIBDIR%%/Bio/config -@dirrm %%PYTHON_SITELIBDIR%%/Bio/dbdefs -@dirrm %%PYTHON_SITELIBDIR%%/Bio/expressions/blast -@dirrm %%PYTHON_SITELIBDIR%%/Bio/expressions/embl -@dirrm %%PYTHON_SITELIBDIR%%/Bio/expressions/swissprot -@dirrm %%PYTHON_SITELIBDIR%%/Bio/expressions -@dirrm %%PYTHON_SITELIBDIR%%/Bio/formatdefs -@dirrm %%PYTHON_SITELIBDIR%%/Bio/writers/SeqRecord -@dirrm %%PYTHON_SITELIBDIR%%/Bio/writers @dirrm %%PYTHON_SITELIBDIR%%/Bio -@dirrm %%PYTHON_SITELIBDIR%%/BioSQL -@dirrm %%PYTHON_SITELIBDIR%%/Martel >Release-Note: >Audit-Trail: >Unformatted:
Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?200908211348.n7LDms2Y012393>