Date: Sat, 2 Jan 2016 21:00:55 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - head-armv6-default][science/openbabel] Failed for openbabel-2.3.2_2 in configure Message-ID: <201601022100.u02L0tSt024534@beefy8.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: makc@FreeBSD.org Last committer: makc@FreeBSD.org Ident: $FreeBSD: head/science/openbabel/Makefile 395231 2015-08-25 10:03:08Z makc $ Log URL: http://beefy8.nyi.freebsd.org/data/head-armv6-default/p405059_s293048/logs/openbabel-2.3.2_2.log Build URL: http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p405059_s293048 Log: ====>> Building science/openbabel build started at Sat Jan 2 20:59:09 UTC 2016 port directory: /usr/ports/science/openbabel building for: FreeBSD head-armv6-default-job-23 11.0-CURRENT FreeBSD 11.0-CURRENT r293048 arm maintained by: makc@FreeBSD.org Makefile ident: $FreeBSD: head/science/openbabel/Makefile 395231 2015-08-25 10:03:08Z makc $ Poudriere version: 3.1.10 Host OSVERSION: 1100091 Jail OSVERSION: 1100093 !!! Jail is newer than host. (Jail: 1100093, Host: 1100091) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv6 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1100093 UNAME_v=FreeBSD 11.0-CURRENT r293048 UNAME_r=11.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM=screen QEMU_EMULATING=1 MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=openbabel-2.3.2_2 OLDPWD=/ PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool MASTERNAME=head-armv6-default SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root POUDRIERE_VERSION=3.1.10 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for openbabel-2.3.2_2: CAIRO=off: PNG support via cairo library PYTHON=on: Python bindings or support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/openbabel/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/openbabel/work HOME=/wrkdirs/usr/ports/science/openbabel/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/openbabel/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/openbabel/work HOME=/wrkdirs/usr/ports/science/openbabel/work TMPDIR="/tmp" NO_PIE=yes NO_DEBUG_FILES=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -mfloat-abi=softfp -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -mfloat-abi=softfp -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- VERSION="2.3.2" CAIRO="@comment " NO_CAIRO="" PYTHON="" NO_PYTHON="@comment " CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd11 PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_VERSION=python2.7 PYTHON_VER=2.7 OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" DOCSDIR="share/doc/openbabel" EXAMPLESDIR="share/examples/openbabel" DATADIR="share/openbabel" WWWDIR="www/openbabel" ETCDIR="etc/openbabel" --End PLIST_SUB-- --SUB_LIST-- CAIRO="@comment " NO_CAIRO="" PYTHON="" NO_PYTHON="@comment " PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/openbabel DOCSDIR=/usr/local/share/doc/openbabel EXAMPLESDIR=/usr/local/share/examples/openbabel WWWDIR=/usr/local/www/openbabel ETCDIR=/usr/local/etc/openbabel --End SUB_LIST-- ---Begin make.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed <snip> ===> Installing existing package /packages/All/eigen-3.2.7.txz [head-armv6-default-job-23] Installing eigen-3.2.7... [head-armv6-default-job-23] Extracting eigen-3.2.7: .......... done ===> openbabel-2.3.2_2 depends on file: /usr/local/include/eigen3/Eigen/Eigen - found ===> Returning to build of openbabel-2.3.2_2 ===> openbabel-2.3.2_2 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-3.4.1.txz [head-armv6-default-job-23] Installing cmake-3.4.1... [head-armv6-default-job-23] `-- Installing expat-2.1.0_3... [head-armv6-default-job-23] `-- Extracting expat-2.1.0_3: .......... done [head-armv6-default-job-23] `-- Installing cmake-modules-3.4.1... [head-armv6-default-job-23] `-- Extracting cmake-modules-3.4.1: .......... done [head-armv6-default-job-23] `-- Installing curl-7.46.0_1... [head-armv6-default-job-23] | `-- Installing ca_root_nss-3.20.1... [head-armv6-default-job-23] | `-- Extracting ca_root_nss-3.20.1: ....... done [head-armv6-default-job-23] `-- Extracting curl-7.46.0_1: .......... done [head-armv6-default-job-23] `-- Installing libarchive-3.1.2_4,1... [head-armv6-default-job-23] | `-- Installing lzo2-2.09... [head-armv6-default-job-23] | `-- Extracting lzo2-2.09: .......... done [head-armv6-default-job-23] `-- Extracting libarchive-3.1.2_4,1: .......... done [head-armv6-default-job-23] `-- Installing jsoncpp-0.6.0.r2_2... [head-armv6-default-job-23] `-- Extracting jsoncpp-0.6.0.r2_2: .......... done [head-armv6-default-job-23] Extracting cmake-3.4.1: .......... done Message from ca_root_nss-3.20.1: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** ===> openbabel-2.3.2_2 depends on file: /usr/local/bin/cmake - found ===> Returning to build of openbabel-2.3.2_2 ===> openbabel-2.3.2_2 depends on file: /usr/local/bin/python2.7 - not found ===> Installing existing package /packages/All/python27-2.7.11.txz [head-armv6-default-job-23] Installing python27-2.7.11... [head-armv6-default-job-23] `-- Installing libffi-3.2.1... [head-armv6-default-job-23] | `-- Installing indexinfo-0.2.4... [head-armv6-default-job-23] | `-- Extracting indexinfo-0.2.4: .... done [head-armv6-default-job-23] `-- Extracting libffi-3.2.1: .......... done [head-armv6-default-job-23] `-- Installing gettext-runtime-0.19.6... [head-armv6-default-job-23] `-- Extracting gettext-runtime-0.19.6: .......... done [head-armv6-default-job-23] `-- Installing readline-6.3.8... [head-armv6-default-job-23] `-- Extracting readline-6.3.8: .......... done [head-armv6-default-job-23] Extracting python27-2.7.11: .......... done Message from python27-2.7.11: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== ===> openbabel-2.3.2_2 depends on file: /usr/local/bin/python2.7 - found ===> Returning to build of openbabel-2.3.2_2 =========================================================================== =======================<phase: lib-depends >============================ ===> openbabel-2.3.2_2 depends on shared library: libxml2.so - not found ===> Installing existing package /packages/All/libxml2-2.9.3.txz [head-armv6-default-job-23] Installing libxml2-2.9.3... [head-armv6-default-job-23] Extracting libxml2-2.9.3: .......... done ===> openbabel-2.3.2_2 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so) ===> Returning to build of openbabel-2.3.2_2 =========================================================================== =======================<phase: configure >============================ ===> Configuring for openbabel-2.3.2_2 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/science/openbabel/work/.build -- The C compiler identification is Clang 3.7.0 -- The CXX compiler identification is Clang 3.7.0 -- Check for working C compiler: /nxb-bin/usr/bin/cc -- Check for working C compiler: /nxb-bin/usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /nxb-bin/usr/bin/c++ -- Check for working CXX compiler: /nxb-bin/usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Using included inchi library. -- Found LibXml2: /usr/local/lib/libxml2.so (found version "2.9.3") -- Found ZLIB: /usr/lib/libz.so (found version "1.2.8") -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) -- Looking for conio.h -- Looking for conio.h - not found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for time.h -- Looking for time.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for rpc/xdr.h -- Looking for rpc/xdr.h - not found -- Looking for regex.h -- Looking for regex.h - found -- Looking for C++ include sstream CMake Error: Generator: execution of make failed. Make command was: "/usr/bin/make" "cmTC_96a06/fast" -- Looking for C++ include sstream - not found -- Looking for rint -- Looking for rint - not found -- Looking for snprintf -- Looking for snprintf - found -- Looking for sranddev -- Looking for sranddev - found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strncasecmp -- Looking for strncasecmp - found -- Looking for dlopen in dl -- Looking for dlopen in dl - not found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of clock_t -- Check size of clock_t - done -- Performing Test SCANDIR_NEEDS_CONST -- Performing Test SCANDIR_NEEDS_CONST - Failed -- Found Eigen3: /usr/local/include/eigen3 (Required is at least version "2.91.0") -- Could NOT find Cairo. PNG output will NOT be supported. -- Looking for getopt -- Looking for getopt - found -- GUI will not be built CMake Warning (dev) in cmake/modules/UsePythonTest.cmake: Syntax Warning in cmake code at /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:54:14 Argument not separated from preceding token by whitespace. Call Stack (most recent call first): test/CMakeLists.txt:171 (include) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) in cmake/modules/UsePythonTest.cmake: Syntax Warning in cmake code at /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:54:31 Argument not separated from preceding token by whitespace. Call Stack (most recent call first): test/CMakeLists.txt:171 (include) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) in cmake/modules/UsePythonTest.cmake: Syntax Warning in cmake code at /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:57:25 Argument not separated from preceding token by whitespace. Call Stack (most recent call first): test/CMakeLists.txt:171 (include) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) in cmake/modules/UsePythonTest.cmake: Syntax Warning in cmake code at /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:57:39 Argument not separated from preceding token by whitespace. Call Stack (most recent call first): test/CMakeLists.txt:171 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/local/bin/python2.7 (found version "2.7.11") -- Found PythonLibs: /usr/local/lib/libpython2.7.so (found version "2.7.11") -- Python bindings will be compiled -- Configuring incomplete, errors occurred! See also "/wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles/CMakeOutput.log". See also "/wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles/CMakeError.log". *** Error code 1 Stop. make: stopped in /usr/ports/science/openbabel
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