Date: Sun, 24 Mar 2013 23:37:18 -0700 (PDT) From: Don Lewis <truckman@FreeBSD.org> To: FreeBSD-gnats-submit@FreeBSD.org Subject: ports/177364: [patch] math/scilab port build fails configuration step Message-ID: <201303250637.r2P6bIlT082848@mousie.catspoiler.org> Resent-Message-ID: <201303250710.r2P7A2J1059769@freefall.freebsd.org>
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>Number: 177364
>Category: ports
>Synopsis: [patch] math/scilab port build fails configuration step
>Confidential: no
>Severity: non-critical
>Priority: medium
>Responsible: freebsd-ports-bugs
>State: open
>Quarter:
>Keywords:
>Date-Required:
>Class: sw-bug
>Submitter-Id: current-users
>Arrival-Date: Mon Mar 25 07:10:02 UTC 2013
>Closed-Date:
>Last-Modified:
>Originator: Don Lewis
>Release: FreeBSD 10.0-CURRENT i386
>Organization:
FreeBSD project
>Environment:
System: FreeBSD scratch.catspoiler.org 10.0-CURRENT FreeBSD 10.0-CURRENT #23 r248434: Sun Mar 17 14:56:39 PDT 2013 dl@scratch.catspoiler.org:/usr/obj/usr/src/sys/GENERICSMB i386
>Description:
When attempting to build the math/scilab port, if fails the
configuration step because it doesn't think it can find the
umfpack library even though suitesparse-4.0.2_1 is installed.
checking for suitesparse/umfpack.h... yes
checking for suitesparse/umfpack.h... (cached) yes
checking for umf_divcomplex in /usr/local/lib... checking for amd_info in -lamd... yes
checking for umf_divcomplex in -lumfpack -lamd -lcholmod -lcolamd -lalapack -lcblas -lcblas -lf77blas -latlas... no
configure: error: libumfpack : Library missing. (Cannot find umf_divcomplex). Check if libumfpack is installed and if the version is correct (also called lib suitesparse)
===> Script "configure" failed unexpectedly.
The problem is that the the symbol SuiteSparse_time is undefined
because it is in a library that is not linked in.
The relevant section of config.log:
configure:22350: checking for umf_divcomplex in -lumfpack -lamd -lcholmod -lcola
md -lalapack -lcblas -lcblas -lf77blas -latlas
configure:22383: gcc46 -o conftest -O2 -pipe -march=athlon64 -Wl,-rpath=/usr/loc
al/lib/gcc46 -fno-strict-aliasing -DNDEBUG -I$(top_srcdir)/modules/core/includes
/ -I$(top_srcdir)/libs/MALLOC/includes/ -I$(top_srcdir)/modules/localization/inc
ludes/ -I/usr/local/include -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc46 co
nftest.c -lumfpack -lamd -lcholmod -lcolamd -lalapack -lcblas -lcblas -lf77blas
-latlas -lcblas -lf77blas -latlas -L/usr/local/lib -lm -pthread -lcurses -lm
>How-To-Repeat:
Attempt to build the math/scilab port.
>Fix:
The following patch fixes the problem for me:
Index: Makefile
===================================================================
--- Makefile (revision 314476)
+++ Makefile (working copy)
@@ -202,7 +202,7 @@
post-patch:
@# Configure fixes
@${REINPLACE_CMD} -e 's|-ldl | |' ${WRKSRC}/configure
- @${REINPLACE_CMD} -e 's|-lumfpack|-lumfpack -lamd -lcholmod -lcolamd $$LAPACK_LIBS $$BLAS_LIBS|g' ${WRKSRC}/configure
+ @${REINPLACE_CMD} -e 's|-lumfpack|-lumfpack -lsuitesparseconfig -lamd -lcholmod -lcolamd $$LAPACK_LIBS $$BLAS_LIBS|g' ${WRKSRC}/configure
@${REINPLACE_CMD} -e 's|TCLTK_LIBS=" -ldl"|TCLTK_LIBS=" "|' ${WRKSRC}/configure
@${REINPLACE_CMD} -e 's|"x=" ==|"x" =|g' ${WRKSRC}/configure
@${REINPLACE_CMD} -e 's|"x" ==|"x" =|g' ${WRKSRC}/configure
>Release-Note:
>Audit-Trail:
>Unformatted:
>&5
/usr/local/lib/libumfpack.so: undefined reference to `SuiteSparse_time'
collect2: ld returned 1 exit status
configure:22383: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "Scilab"
| #define PACKAGE_TARNAME "scilab"
| #define PACKAGE_VERSION "5"
| #define PACKAGE_STRING "Scilab 5"
| #define PACKAGE_BUGREPORT "http://bugzilla.scilab.org/"
| #define PACKAGE_URL ""
| #define O_LARGEFILE 0
| #define INSTALLPREFIX "/usr/local"
| #define STDC_HEADERS 1
| #define INSTALLPREFIX "/usr/local"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define INSTALLPREFIX "/usr/local"
| #define PACKAGE "scilab"
| #define VERSION "5"
| #define G95_FORTRAN /**/
| #define SIZEOF_INT 4
| #define SIZEOF_LONG 4
| #define WTU /**/
| #define CNAME(name1,name2) name1##name2
| #define C2F(name) name##_
| #define F2C(name) name##_
| #define HAVE_LIBHDF5 1
| #define WITH_HDF5 /**/
| #define WITH_HDF5 /**/
| #define WITH_XCOS /**/
| #define HAVE_CLOCK_GETTIME 1
| #define WITH_GUI /**/
| #define HAVE_SLEEP 1
| #define HAVE_USLEEP 1
| #define HAVE_DUP2 1
| #define HAVE_GETCWD 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_GETPASS 1
| #define HAVE_RMDIR 1
| #define HAVE_GETWD 1
| #define HAVE_REGCOMP 1
| #define HAVE_ATEXIT 1
| #define HAVE_PUTENV 1
| #define HAVE_SETENV 1
| #define HAVE_BZERO 1
| #define HAVE_MEMMOVE 1
| #define HAVE_MEMSET 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRERROR 1
| #define HAVE_STRCHR 1
| #define HAVE_STRDUP 1
| #define HAVE_STRPBRK 1
| #define HAVE_STRRCHR 1
| #define HAVE_STRSTR 1
| #define HAVE_STRTOL 1
| #define HAVE_SELECT 1
| #define HAVE_ENDPWENT 1
| #define HAVE_GETHOSTBYADDR 1
| #define HAVE_GETHOSTBYNAME 1
| #define HAVE_GETHOSTNAME 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_ISASCII 1
| #define HAVE_ISWPRINT 1
| #define HAVE_MKDIR 1
| #define HAVE_MUNMAP 1
| #define HAVE_STRSIGNAL 1
| #define HAVE_POW 1
| #define HAVE_SQRT 1
| #define HAVE_FINITE 1
| #define HAVE_FLOOR 1
| #define HAVE_SOCKET 1
| #define HAVE_UNAME 1
| #define HAVE_SETLOCALE 1
| #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1
| #define HAVE_LIMITS_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LIBINTL_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_NETDB_H 1
| #define HAVE_NETINET_IN_H 1
| #define HAVE_NLIST_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_SYS_FILE_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_SYS_SOCKET_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_SYS_TIMEB_H 1
| #define HAVE_SYS_UTSNAME_H 1
| #define HAVE_SYSLOG_H 1
| #define HAVE_TERM_H 1
| #define HAVE_TERMCAP_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_WCHAR_H 1
| #define HAVE_WCTYPE_H 1
| #define HAVE_TIME_H 1
| #define HAVE_DIRENT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_SYS_WAIT_H 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_STRUCT_STAT_ST_RDEV 1
| #define HAVE_ICONV 1
| #define ENABLE_NLS 1
| #define HAVE_GETTEXT 1
| #define HAVE_DCGETTEXT 1
| #define RETSIGTYPE void
| #define HAVE_STRUCT_STAT_ST_BLOCKS 1
| #define HAVE_ST_BLOCKS 1
| #define HAVE_LIBCURSES 1
| #define HAVE_NCURSES_H 1
| #define HAVE_CURSES_H 1
| #define HAVE_TERMCAP /**/
| #define HAVE_LIBDL 1
| #define WITH_FFTW /**/
| #define HAVE_OMP_H 1
| #define HAVE_LIBXML2 1
| #define LIBXML_FLAGS "-I/usr/local/include/libxml2 -I/usr/local/include"
| #define LIBXML_LIBS "-L/usr/local/lib -lxml2 -lz -L/usr/local/lib -liconv -lm"
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char umf_divcomplex ();
| #ifdef F77_DUMMY_MAIN
|
| # ifdef __cplusplus
| extern "C"
| # endif
| int F77_DUMMY_MAIN() { return 1; }
|
| #endif
| int
| main ()
| {
| return umf_divcomplex ();
| ;
| return 0;
| }
configure:22392: result: no
configure:22397: error: libumfpack : Library missing. (Cannot find umf_divcomple
x). Check if libumfpack is installed and if the version is correct (also called
lib suitesparse)
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