Date: Wed, 2 Apr 2014 09:42:51 GMT From: pkg-fallout-builder@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [REL - 91i386-quarterly][science/jmol] Failed for jmol-13.2.3 in build Message-ID: <201404020942.s329gpmI048747@beefy1.isc.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: ports@FreeBSD.org Last committer: pawel@FreeBSD.org Ident: $FreeBSD: branches/2014Q1/science/jmol/Makefile 333140 2013-11-07 16:53:33Z pawel $ Log URL: http://beefy1.isc.freebsd.org/bulk/91i386-quarterly/2014-04-02_01h04m51s/logs/jmol-13.2.3.log Build URL: http://beefy1.isc.freebsd.org/bulk/91i386-quarterly/2014-04-02_01h04m51s Log: ====>> Building science/jmol build started at Wed Apr 2 09:41:21 UTC 2014 port directory: /usr/ports/science/jmol building for: FreeBSD 91i386-quarterly-job-18 9.1-RELEASE-p10 FreeBSD 9.1-RELEASE-p10 i386 maintained by: ports@FreeBSD.org Makefile ident: $FreeBSD: branches/2014Q1/science/jmol/Makefile 333140 2013-11-07 16:53:33Z pawel $ Poudriere version: 3.1-pre ---Begin Environment--- UNAME_m=i386 UNAME_p=i386 OSVERSION=901000 UNAME_v=FreeBSD 9.1-RELEASE-p10 UNAME_r=9.1-RELEASE-p10 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 MASTERMNT=/usr/local/poudriere/data/build/91i386-quarterly/ref PKG_EXT=txz tpid=86556 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNG=1 PKGNAME=jmol-13.2.3 PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f PKG_ADD=/usr/local/sbin/pkg-static add PWD=/root MASTERNAME=91i386-quarterly USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes PKG_VERSION=/poudriere/pkg-static version PKG_BIN=/usr/local/sbin/pkg-static ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for jmol-13.2.3: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- TMPDIR="/tmp" JAVA_HOME=/usr/local/openjdk7 SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444" --End MAKE_ENV-- --SUB_LIST-- JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" JAVA_VERSION="1.7+" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/jmol DOCSDIR=/usr/local/share/doc/jmol EXAMPLESDIR=/usr/local/share/examples/jmol WWWDIR=/usr/local/www/jmol ETCDIR=/usr/local/etc/jmol --End SUB_LIST-- ---Begin make.conf--- ARCH=i386 MACHINE=i386 MACHINE_ARCH=i386 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### WITH_PKGNG=yes NO_RESTRICTED=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ===> Cleaning for jmol-13.2.3 =======================<phase: check-config >============================ =========================================================================== =======================<phase: pkg-depends >============================ ===> jmol-13.2.3 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg ===> Installing existing package /packages/All/pkg-1.2.7.txz Installing pkg-1.2.7... done If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of jmol-13.2.3 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> Fetching all distfiles required by jmol-13.2.3 for building =========================================================================== =======================<phase: checksum >============================ ===> Fetching all distfiles required by jmol-13.2.3 for building => SHA256 Checksum OK for Jmol-13.2.3-full.tar.gz. => SHA256 Checksum OK for selfSignedCertificate.cer. => SHA256 Checksum OK for selfSignedCertificate.store. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> Fetching all distfiles required by jmol-13.2.3 for building ===> Extracting for jmol-13.2.3 => SHA256 Checksum OK for Jmol-13.2.3-full.tar.gz. => SHA256 Checksum OK for selfSignedCertificate.cer. => SHA256 Checksum OK for selfSignedCertificate.store. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for jmol-13.2.3 =========================================================================== =======================<phase: build-depends >============================ ===> jmol-13.2.3 depends on file: /usr/local/openjdk7/bin/java - not found ===> Verifying install for /usr/local/openjdk7/bin/java in /usr/ports/java/openjdk7 ===> Installing existing package /packages/All/openjdk-7.51.13_2,1.txz Installing openjdk-7.51.13_2,1...Installing libXtst-1.2.2...Installing inputproto-2.3... done Installing libX11-1.6.2,1...Installing kbproto-1.0.6... done Installing libXau-1.0.8...Installing xproto-7.0.25... done done Installing libXdmcp-1.1.1... done Installing libxcb-1.9.3...Installing libpthread-stubs-0.3_4... done Installing libxml2-2.8.0_3...Installing libiconv-1.14_3... done done done done Installing libXext-1.3.2,1...Installing xextproto-7.2.1... done done Installing libXi-1.7.2,1...Installing libXfixes-5.0.1...Installing fixesproto-5.0... done done done Installing recordproto-1.14.2... done done Installing libXrender-0.9.8...Installing renderproto-0.11.1... done done Installing libXt-1.1.4,1...Installing libSM-1.2.2,1...Installing libICE-1.0.8,1... done done done Installing dejavu-2.34_3... done Installing freetype2-2.5.3... done Installing javavmwrapper-2.4_3... done Installing java-zoneinfo-2014.b... done Installing alsa-lib-1.0.27.2_1... done done Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/lib/X11/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===> Returning to build of jmol-13.2.3 ===> jmol-13.2.3 depends on file: /usr/local/bin/ant - not found ===> Verifying install for /usr/local/bin/ant in /usr/ports/devel/apache-ant ===> Installing existing package /packages/All/apache-ant-1.9.3.txz Installing apache-ant-1.9.3...Installing openjdk6-b30_3,1...Installing libXpm-3.5.11... done Installing open-motif-2.3.4...Installing jpeg-8_4... done Installing libXaw-1.0.12,2...Installing libXmu-1.1.2,1... done Installing libXp-1.0.2,1...Installing printproto-1.0.5... done done done Installing libXft-2.3.1...Installing fontconfig-2.11.0_1,1...Installing expat-2.1.0... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: caching, new cache contents: 0 fonts, 2 dirs /usr/local/lib/X11/fonts/dejavu: caching, new cache contents: 21 fonts, 0 dirs /usr/local/lib/X11/fonts/local: caching, new cache contents: 0 fonts, 0 dirs /root/.local/share/fonts: skipping, no such directory /root/.fonts: skipping, no such directory /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: caching, new cache contents: 0 fonts, 2 dirs /root/.local/share/fonts: skipping, no such directory /root/.fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory /root/.cache/fontconfig: not cleaning non-existent cache directory /root/.fontconfig: not cleaning non-existent cache directory fc-cache: succeeded done done Installing png-1.5.18... done Installing xbitmaps-1.1.1... done done done done ====================================================================== <snip> ===> Returning to build of jmol-13.2.3 =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for jmol-13.2.3 =========================================================================== =======================<phase: build >============================ ===> Building for jmol-13.2.3 Buildfile: /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build.xml [copy] Copying 1 file to /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3 [echo] version=13.2.3 init: setup: check.docbook-xml: [mkdir] Created dir: /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/docbook-xml [unzip] Expanding: /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/doc/docbook-xml-4.4.zip into /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/docbook-xml [touch] Creating /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/docbook-xml.timestamp check.docbook-xsl: [mkdir] Created dir: /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/docbook-xsl-1.76.1 [untar] Expanding: /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/doc/docbook-xsl-1.76.1.tar.gz into /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build [touch] Creating /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/docbook-xsl-1.76.1.timestamp check.xsl: initdoc: jmolGuide: [echo] Generating user's guide [mkdir] Created dir: /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/doc/JmolUserGuide [java] Writing ch01.html for chapter(intro) [java] Writing ch02s02.html for section(OptionScript) [java] Writing ch02s03.html for section(OptionGeometry) [java] Writing ch02s04.html for section(OptionLanguage) [java] Writing ch02s05.html for section(OptionSpeed) [java] Writing ch02s06.html for section(OptionPluginDir) [java] Writing ch02s07.html for section(OptionXmx) [java] Writing ch02.html for chapter(commandlineoptions) [java] Writing ch03s02.html for section(EditMenu) [java] Writing ch03s03.html for section(DisplayMenu) [java] Writing ch03s04.html for section(ViewMenu) [java] Writing ch03s05.html for section(HelpMenu) [java] Writing ch03.html for chapter(menudesc) [java] Element img in namespace '' encountered in para, but no template matches. [java] Element img in namespace '' encountered in para, but no template matches. [java] Element img in namespace '' encountered in para, but no template matches. [java] Writing ch04.html for chapter(rasmol) [java] Writing index.html for book [echo] Generating user's guide (fr) [mkdir] Created dir: /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/doc/JmolUserGuide_fr [java] Writing ch01.html for chapter(intro) [java] Writing ch02s02.html for section(OptionLanguage) [java] Writing ch02s03.html for section(OptionSpeed) [java] Writing ch02s04.html for section(OptionXmx) [java] Writing ch02.html for chapter(commandlineoptions) [java] Writing ch03s02.html for section(EditMenu) [java] Writing ch03s03.html for section(DisplayMenu) [java] Writing ch03s04.html for section(ViewMenu) [java] Writing ch03s05.html for section(HelpMenu) [java] Writing ch03.html for chapter(menudesc) [java] Element img in namespace '' encountered in para, but no template matches. [java] Element img in namespace '' encountered in para, but no template matches. [java] Element img in namespace '' encountered in para, but no template matches. [java] Writing ch04.html for chapter(rasmol) [java] Writing index.html for book jmolDevelopersGuide: [echo] Generating developer's guide [echo] Generating developer's guide (fr) [echo] Generating developer's guide (de) jmolAppletGuide: [echo] Generating applet guide [echo] Generating applet guide (fr) [echo] Generating applet guide (de) jmolHistory: [echo] Generating history of changes [mkdir] Created dir: /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/doc/JmolHistory [echo] Generating history of changes (fr) [echo] Generating history of changes (nl) [echo] Generating history of changes (ro) javadoc: [mkdir] Created dir: /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/javadoc [javadoc] Generating Javadoc [javadoc] Javadoc execution [javadoc] Loading source files for package org.jmol.adapter.readers.cifpdb... [javadoc] Loading source files for package org.jmol.adapter.readers.molxyz... [javadoc] Loading source files for package org.jmol.adapter.readers.more... [javadoc] Loading source files for package org.jmol.adapter.readers.pymol... [javadoc] Loading source files for package org.jmol.adapter.readers.quantum... [javadoc] Loading source files for package org.jmol.adapter.readers.simple... [javadoc] Loading source files for package org.jmol.adapter.readers.xml... [javadoc] Loading source files for package org.jmol.adapter.readers.xtal... [javadoc] Loading source files for package org.jmol.adapter.smarter... [javadoc] Loading source files for package org.jmol.api... [javadoc] Loading source files for package org.jmol.applet... [javadoc] Loading source files for package org.jmol.appletjs... [javadoc] Loading source files for package org.jmol.atomdata... [javadoc] Loading source files for package org.jmol.awt... [javadoc] Loading source files for package org.jmol.awtjs... [javadoc] Loading source files for package org.jmol.awtjs2d... [javadoc] Loading source files for package org.jmol.bspt... [javadoc] Loading source files for package org.jmol.console... [javadoc] Loading source files for package org.jmol.consolejs... [javadoc] Loading source files for package org.jmol.constant... [javadoc] Loading source files for package org.jmol.export... [javadoc] Loading source files for package org.jmol.export.dialog... [javadoc] Loading source files for package org.jmol.export.history... [javadoc] Loading source files for package org.jmol.export.image... [javadoc] Loading source files for package org.jmol.exportjs... [javadoc] Loading source files for package org.jmol.g3d... [javadoc] Loading source files for package org.jmol.geodesic... [javadoc] Loading source files for package org.jmol.i18n... [javadoc] Loading source files for package org.jmol.io... [javadoc] Loading source files for package org.jmol.io2... [javadoc] Loading source files for package org.jmol.jvxl.api... [javadoc] Loading source files for package org.jmol.jvxl.calc... [javadoc] Loading source files for package org.jmol.jvxl.data... [javadoc] Loading source files for package org.jmol.jvxl.readers... [javadoc] Loading source files for package org.jmol.minimize... [javadoc] Loading source files for package org.jmol.minimize.forcefield... [javadoc] Loading source files for package org.jmol.modelkit... [javadoc] Loading source files for package org.jmol.modelset... [javadoc] Loading source files for package org.jmol.modelsetbio... [javadoc] Loading source files for package org.jmol.multitouch... [javadoc] Loading source files for package org.jmol.multitouch.jni... [javadoc] Loading source files for package org.jmol.multitouch.sparshui... [javadoc] Loading source files for package org.jmol.navigate... [javadoc] Loading source files for package org.jmol.parallel... [javadoc] Loading source files for package org.jmol.popup... [javadoc] Loading source files for package org.jmol.quantum... [javadoc] Loading source files for package org.jmol.render... [javadoc] Loading source files for package org.jmol.renderbio... [javadoc] Loading source files for package org.jmol.rendercgo... [javadoc] Loading source files for package org.jmol.renderspecial... [javadoc] Loading source files for package org.jmol.rendersurface... [javadoc] Loading source files for package org.jmol.script... [javadoc] 1 error [javadoc] javadoc: error - java.lang.OutOfMemoryError: Please increase memory. [javadoc] For example, on the JDK Classic or HotSpot VMs, add the option -J-Xmx [javadoc] such as -J-Xmx32m. doc: classes: [mkdir] Created dir: /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/classes [javac] Compiling 727 source files to /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/classes [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5 [javac] [javac] [javac] The system is out of resources. [javac] Consult the following stack trace for details. [javac] java.lang.OutOfMemoryError: Java heap space [javac] at com.sun.tools.javac.util.ListBuffer.append(ListBuffer.java:132) [javac] at com.sun.tools.javac.parser.JavacParser.moreStatementExpressions(JavacParser.java:1943) [javac] at com.sun.tools.javac.parser.JavacParser.forUpdate(JavacParser.java:1975) [javac] at com.sun.tools.javac.parser.JavacParser.parseStatement(JavacParser.java:1737) [javac] at com.sun.tools.javac.parser.JavacParser.parseStatement(JavacParser.java:1739) [javac] at com.sun.tools.javac.parser.JavacParser.blockStatements(JavacParser.java:1598) [javac] at com.sun.tools.javac.parser.JavacParser.block(JavacParser.java:1561) [javac] at com.sun.tools.javac.parser.JavacParser.block(JavacParser.java:1575) [javac] at com.sun.tools.javac.parser.JavacParser.methodDeclaratorRest(JavacParser.java:2696) [javac] at com.sun.tools.javac.parser.JavacParser.classOrInterfaceBodyDeclaration(JavacParser.java:2645) [javac] at com.sun.tools.javac.parser.JavacParser.classOrInterfaceBody(JavacParser.java:2573) [javac] at com.sun.tools.javac.parser.JavacParser.classDeclaration(JavacParser.java:2421) [javac] at com.sun.tools.javac.parser.JavacParser.classOrInterfaceOrEnumDeclaration(JavacParser.java:2362) [javac] at com.sun.tools.javac.parser.JavacParser.typeDeclaration(JavacParser.java:2351) [javac] at com.sun.tools.javac.parser.JavacParser.parseCompilationUnit(JavacParser.java:2289) [javac] at com.sun.tools.javac.main.JavaCompiler.parse(JavaCompiler.java:595) [javac] at com.sun.tools.javac.main.JavaCompiler.parse(JavaCompiler.java:632) [javac] at com.sun.tools.javac.main.JavaCompiler.parseFiles(JavaCompiler.java:909) [javac] at com.sun.tools.javac.main.JavaCompiler.compile(JavaCompiler.java:824) [javac] at com.sun.tools.javac.main.Main.compile(Main.java:439) [javac] at com.sun.tools.javac.main.Main.compile(Main.java:353) [javac] at com.sun.tools.javac.main.Main.compile(Main.java:342) [javac] at com.sun.tools.javac.main.Main.compile(Main.java:333) [javac] at com.sun.tools.javac.Main.compile(Main.java:76) [javac] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [javac] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) [javac] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [javac] at java.lang.reflect.Method.invoke(Method.java:606) [javac] at org.apache.tools.ant.taskdefs.compilers.Javac13.execute(Javac13.java:56) [javac] at org.apache.tools.ant.taskdefs.Javac.compile(Javac.java:1153) [javac] at org.apache.tools.ant.taskdefs.Javac.execute(Javac.java:930) [javac] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:292) BUILD FAILED /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build.xml:228: Compile failed; see the compiler error output for details. Total time: 1 minute 1 second *** [do-build] Error code 1 Stop in /usr/ports/science/jmol. ===> Cleaning for jmol-13.2.3
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