Date: Mon, 27 Sep 2010 13:39:57 GMT From: ohata <Ohata.Hideshi@zf.MitsubishiElectric.co.jp> To: freebsd-gnats-submit@FreeBSD.org Subject: ports/150994: Suitesparse can not compile with atlas Message-ID: <201009271339.o8RDdv76032532@www.freebsd.org> Resent-Message-ID: <201009271340.o8RDe4aA083562@freefall.freebsd.org>
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>Number: 150994 >Category: ports >Synopsis: Suitesparse can not compile with atlas >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: sw-bug >Submitter-Id: current-users >Arrival-Date: Mon Sep 27 13:40:04 UTC 2010 >Closed-Date: >Last-Modified: >Originator: ohata >Release: 8-stable >Organization: Mitsubishi >Environment: FreeBSD yyy.co.jp 8.1-STABLE FreeBSD 8.1-STABLE #8: Fri Sep 24 14:05:33 JST 2010 root@yyy.co.jp:/usr/obj/usr/src/sys/GX260.8 i386 >Description: SuiteSparse can not compile with atlas under gcc45. hostname:/usr/ports/math/suitesparse# make ===> License check disabled, port has not defined LICENSE ===> Extracting for suitesparse-3.4.0_1 => MD5 Checksum OK for SuiteSparse-3.4.0.tar.gz. => SHA256 Checksum OK for SuiteSparse-3.4.0.tar.gz. ===> Patching for suitesparse-3.4.0_1 ===> Applying FreeBSD patches for suitesparse-3.4.0_1 /bin/cp -r /usr/ports/math/suitesparse/work/SuiteSparse /usr/ports/math/suitesparse/work/SuiteSparse_shared ===> suitesparse-3.4.0_1 depends on executable: gmake - found ===> suitesparse-3.4.0_1 depends on executable: gcc45 - found ===> suitesparse-3.4.0_1 depends on shared library: atlas - found ===> Configuring for suitesparse-3.4.0_1 ===> Building for suitesparse-3.4.0_1 cd /usr/ports/math/suitesparse/work/SuiteSparse ; gmake ( cd UFconfig/xerbla ; gmake ) gmake[1]: Entering directory `/usr/ports/math/suitesparse/work/SuiteSparse/UFconfig/xerbla' gcc45 -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc45 -fno-strict-aliasing -c xerbla.c ar cr libcerbla.a xerbla.o rm -f xerbla.o gmake[1]: Leaving directory `/usr/ports/math/suitesparse/work/SuiteSparse/UFconfig/xerbla' ( cd AMD ; gmake ) gmake[1]: Entering directory `/usr/ports/math/suitesparse/work/SuiteSparse/AMD' ( cd Lib ; gmake ) snip gmake[4]: Entering directory `/usr/ports/math/suitesparse/work/SuiteSparse/CCOLAMD/Lib' gmake[4]: Nothing to be done for `default'. gmake[4]: Leaving directory `/usr/ports/math/suitesparse/work/SuiteSparse/CCOLAMD/Lib' gmake[3]: Leaving directory `/usr/ports/math/suitesparse/work/SuiteSparse/CCOLAMD' gcc45 -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc45 -fno-strict-aliasing -DNPARTITION -o cholmod_demo -I../Include -I../../UFconfig cholmod_demo.c ../Lib/libcholmod.a ../../AMD/Lib/libamd.a ../../COLAMD/Lib/libcolamd.a ../../CCOLAMD/Lib/libccolamd.a ../../CAMD/Lib/libcamd.a -L/usr/local/lib -pthread -lalapack_r -L/usr/local/lib -pthread -lptf77blas -lptcblas -latlas_r -lgfortran -lgfortranbegin -lm /usr/local/bin/ld: cholmod_demo: hidden symbol `__powidf2' in /usr/local/lib/gcc45/gcc/i386-portbld-freebsd8.1/4.5.2/libgcc.a(_powidf2.o) is referenced by DSO /usr/local/bin/ld: final link failed: Nonrepresentable section on output collect2: ld returned 1 exit status gmake[2]: *** [cholmod_demo] Error 1 gmake[2]: Leaving directory `/usr/ports/math/suitesparse/work/SuiteSparse/CHOLMOD/Demo' gmake[1]: *** [all] Error 2 gmake[1]: Leaving directory `/usr/ports/math/suitesparse/work/SuiteSparse/CHOLMOD' gmake: *** [default] Error 2 *** Error code 2 Stop in /usr/ports/math/suitesparse. >How-To-Repeat: When Atlas is not installed, it can compile with blas under gcc45. >Fix: >Release-Note: >Audit-Trail: >Unformatted:
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