Date: Mon, 13 Oct 2014 11:01:52 +0000 (UTC) From: Alexey Dokuchaev <danfe@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r370764 - head/biology/ugene Message-ID: <201410131101.s9DB1qbY076979@svn.freebsd.org>
next in thread | raw e-mail | index | archive | help
Author: danfe Date: Mon Oct 13 11:01:51 2014 New Revision: 370764 URL: https://svnweb.freebsd.org/changeset/ports/370764 QAT: https://qat.redports.org/buildarchive/r370764/ Log: Update to version 1.14.2. Modified: head/biology/ugene/Makefile head/biology/ugene/distinfo head/biology/ugene/pkg-plist Modified: head/biology/ugene/Makefile ============================================================================== --- head/biology/ugene/Makefile Mon Oct 13 10:45:04 2014 (r370763) +++ head/biology/ugene/Makefile Mon Oct 13 11:01:51 2014 (r370764) @@ -2,8 +2,7 @@ # $FreeBSD$ PORTNAME= ugene -DISTVERSION= 1.14.0 -PORTREVISION= 1 +DISTVERSION= 1.14.2 CATEGORIES= biology science MASTER_SITES= http://ugene.unipro.ru/downloads/ DISTFILES= ${DISTNAME}${EXTRACT_SUFX} QueryDesigner_UserManual.pdf \ @@ -75,5 +74,10 @@ post-patch: .for x in ugenecl ugeneui plugins_checker @${ECHO_CMD} 'LIBS += -lexecinfo' >> ${WRKSRC}/src/${x}/${x}.pro .endfor +# missing linefeeds at EOF irk gcc4.2 + @(cd ${WRKSRC}/src && ${FIND} -E . -type f -regex '.*\.(cpp|h)' | \ + while read f; do if [ "`${TAIL} -c 1 "$$f"`" ]; then \ + ${ECHO_CMD} >&2 "$${f#./} lacks newline at EOF, fixing"; \ + ${ECHO_CMD} >> "$$f"; fi; done) .include <bsd.port.post.mk> Modified: head/biology/ugene/distinfo ============================================================================== --- head/biology/ugene/distinfo Mon Oct 13 10:45:04 2014 (r370763) +++ head/biology/ugene/distinfo Mon Oct 13 11:01:51 2014 (r370764) @@ -1,5 +1,5 @@ -SHA256 (ugene/ugene-1.14.0.tar.gz) = e54f67d54378fcb375029267bc1ae75aec5e6e4e7c9977184be5865475ef2c42 -SIZE (ugene/ugene-1.14.0.tar.gz) = 19777919 +SHA256 (ugene/ugene-1.14.2.tar.gz) = deea01b9a5386094fa2d7e48db9d529afd9520ed0d6bc5bb2fb40493ae861a3a +SIZE (ugene/ugene-1.14.2.tar.gz) = 19800763 SHA256 (ugene/QueryDesigner_UserManual.pdf) = 2add11809ecc3225abfef417ad8d5435fed76a662081f461abb36e3d4b31cfcd SIZE (ugene/QueryDesigner_UserManual.pdf) = 824781 SHA256 (ugene/UniproUGENE_UserManual.pdf) = c4aa20246988978c6b40a06f7753f78d204ee3155cb8876a3d665b9ebf5641db Modified: head/biology/ugene/pkg-plist ============================================================================== --- head/biology/ugene/pkg-plist Mon Oct 13 10:45:04 2014 (r370763) +++ head/biology/ugene/pkg-plist Mon Oct 13 11:01:51 2014 (r370764) @@ -1416,13 +1416,18 @@ share/pixmaps/ugene.xpm %%DATADIR%%/workflow_samples/NGS/tuxedo.uwl %%DATADIR%%/workflow_samples/Scenarios/extract_consensus.uwl %%DATADIR%%/workflow_samples/Scenarios/filter_matched.uwl +%%DATADIR%%/workflow_samples/Scenarios/find_inverted_repeats.uwl %%DATADIR%%/workflow_samples/Scenarios/find_sequences.uwl %%DATADIR%%/workflow_samples/Scenarios/gene_by_gene_report.uwl %%DATADIR%%/workflow_samples/Scenarios/merge_sequence_annotation.uwl +%%DATADIR%%/workflow_samples/Scenarios/remote_blasting.uwl +%%DATADIR%%/workflow_samples/Scenarios/translate_seq_and_compl.uwl %%DATADIR%%/workflow_samples/Transcriptomics/SearchTFBS.uwl %%DATADIR%%/workflow_samples/users/CASAVA FASTQ filter.usa %%DATADIR%%/workflow_samples/users/Dump sequence info.usa %%DATADIR%%/workflow_samples/users/FASTQ Trimmer.usa +%%DATADIR%%/workflow_samples/users/Get the first half of sequence.usa +%%DATADIR%%/workflow_samples/users/Get the second half of sequence.usa %%DATADIR%%/workflow_samples/users/LinkData Fetch.usa %%DATADIR%%/workflow_samples/users/QualityFilter.usa @dirrm %%DATADIR%%/workflow_samples/users
Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?201410131101.s9DB1qbY076979>