Date: Mon, 11 Apr 2011 08:49:53 GMT From: Wen Heping <wen@FreeBSD.org> To: freebsd-gnats-submit@FreeBSD.org Subject: ports/156329: [Update]biology/py-biopython:update to 1.57 Message-ID: <201104110849.p3B8nrMY076094@red.freebsd.org> Resent-Message-ID: <201104110850.p3B8o4Ye096529@freefall.freebsd.org>
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>Number: 156329 >Category: ports >Synopsis: [Update]biology/py-biopython:update to 1.57 >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: update >Submitter-Id: current-users >Arrival-Date: Mon Apr 11 08:50:04 UTC 2011 >Closed-Date: >Last-Modified: >Originator: Wen Heping >Release: >Organization: FreeBSD >Environment: >Description: Update to 1.57 >How-To-Repeat: >Fix: --- Makefile.orig 2011-04-11 14:43:23.000000000 +0800 +++ Makefile 2011-04-11 14:43:52.000000000 +0800 @@ -6,8 +6,7 @@ # PORTNAME= biopython -PORTVERSION= 1.54 -PORTREVISION= 1 +PORTVERSION= 1.57 CATEGORIES= biology python MASTER_SITES= http://www.biopython.org/DIST/ PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} --- distinfo.orig 2011-04-11 14:43:31.000000000 +0800 +++ distinfo 2011-04-11 14:46:04.000000000 +0800 @@ -1,2 +1,2 @@ -SHA256 (biopython-1.54.tar.gz) = 6f704698d68af75b3601b2a862386682b2317038b8bbaf2eb2ad68c1e1a4dc35 -SIZE (biopython-1.54.tar.gz) = 6445527 +SHA256 (biopython-1.57.tar.gz) = 07c16a86127770c8d5b653a6e82fee0999159f7284a3a01c98cf66ed2f0ec4a0 +SIZE (biopython-1.57.tar.gz) = 6945024 --- pkg-plist.orig 2011-04-11 14:43:41.000000000 +0800 +++ pkg-plist 2011-04-11 16:46:03.000000000 +0800 @@ -1,3 +1,6 @@ +%%PYTHON_SITELIBDIR%%/Bio/_py3k.py +%%PYTHON_SITELIBDIR%%/Bio/_py3k.pyc +%%PYTHON_SITELIBDIR%%/Bio/_py3k.pyo %%PYTHON_SITELIBDIR%%/Bio/Affy/CelFile.py %%PYTHON_SITELIBDIR%%/Bio/Affy/CelFile.pyc %%PYTHON_SITELIBDIR%%/Bio/Affy/CelFile.pyo @@ -31,36 +34,12 @@ %%PYTHON_SITELIBDIR%%/Bio/Align/Applications/__init__.py %%PYTHON_SITELIBDIR%%/Bio/Align/Applications/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/Align/Applications/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/Align/FormatConvert.py -%%PYTHON_SITELIBDIR%%/Bio/Align/FormatConvert.pyc -%%PYTHON_SITELIBDIR%%/Bio/Align/FormatConvert.pyo %%PYTHON_SITELIBDIR%%/Bio/Align/Generic.py %%PYTHON_SITELIBDIR%%/Bio/Align/Generic.pyc %%PYTHON_SITELIBDIR%%/Bio/Align/Generic.pyo %%PYTHON_SITELIBDIR%%/Bio/Align/__init__.py %%PYTHON_SITELIBDIR%%/Bio/Align/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/Align/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/AlignAce/AlignAceStandalone.py -%%PYTHON_SITELIBDIR%%/Bio/AlignAce/AlignAceStandalone.pyc -%%PYTHON_SITELIBDIR%%/Bio/AlignAce/AlignAceStandalone.pyo -%%PYTHON_SITELIBDIR%%/Bio/AlignAce/Applications.py -%%PYTHON_SITELIBDIR%%/Bio/AlignAce/Applications.pyc -%%PYTHON_SITELIBDIR%%/Bio/AlignAce/Applications.pyo -%%PYTHON_SITELIBDIR%%/Bio/AlignAce/CompareAceStandalone.py -%%PYTHON_SITELIBDIR%%/Bio/AlignAce/CompareAceStandalone.pyc -%%PYTHON_SITELIBDIR%%/Bio/AlignAce/CompareAceStandalone.pyo -%%PYTHON_SITELIBDIR%%/Bio/AlignAce/Motif.py -%%PYTHON_SITELIBDIR%%/Bio/AlignAce/Motif.pyc -%%PYTHON_SITELIBDIR%%/Bio/AlignAce/Motif.pyo -%%PYTHON_SITELIBDIR%%/Bio/AlignAce/Parser.py -%%PYTHON_SITELIBDIR%%/Bio/AlignAce/Parser.pyc -%%PYTHON_SITELIBDIR%%/Bio/AlignAce/Parser.pyo -%%PYTHON_SITELIBDIR%%/Bio/AlignAce/Scanner.py -%%PYTHON_SITELIBDIR%%/Bio/AlignAce/Scanner.pyc -%%PYTHON_SITELIBDIR%%/Bio/AlignAce/Scanner.pyo -%%PYTHON_SITELIBDIR%%/Bio/AlignAce/__init__.py -%%PYTHON_SITELIBDIR%%/Bio/AlignAce/__init__.pyc -%%PYTHON_SITELIBDIR%%/Bio/AlignAce/__init__.pyo %%PYTHON_SITELIBDIR%%/Bio/AlignIO/ClustalIO.py %%PYTHON_SITELIBDIR%%/Bio/AlignIO/ClustalIO.pyc %%PYTHON_SITELIBDIR%%/Bio/AlignIO/ClustalIO.pyo @@ -146,9 +125,6 @@ %%PYTHON_SITELIBDIR%%/Bio/DocSQL.py %%PYTHON_SITELIBDIR%%/Bio/DocSQL.pyc %%PYTHON_SITELIBDIR%%/Bio/DocSQL.pyo -%%PYTHON_SITELIBDIR%%/Bio/EZRetrieve.py -%%PYTHON_SITELIBDIR%%/Bio/EZRetrieve.pyc -%%PYTHON_SITELIBDIR%%/Bio/EZRetrieve.pyo %%PYTHON_SITELIBDIR%%/Bio/Emboss/Applications.py %%PYTHON_SITELIBDIR%%/Bio/Emboss/Applications.pyc %%PYTHON_SITELIBDIR%%/Bio/Emboss/Applications.pyo @@ -161,12 +137,6 @@ %%PYTHON_SITELIBDIR%%/Bio/Emboss/__init__.py %%PYTHON_SITELIBDIR%%/Bio/Emboss/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/Emboss/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/Encodings/IUPACEncoding.py -%%PYTHON_SITELIBDIR%%/Bio/Encodings/IUPACEncoding.pyc -%%PYTHON_SITELIBDIR%%/Bio/Encodings/IUPACEncoding.pyo -%%PYTHON_SITELIBDIR%%/Bio/Encodings/__init__.py -%%PYTHON_SITELIBDIR%%/Bio/Encodings/__init__.pyc -%%PYTHON_SITELIBDIR%%/Bio/Encodings/__init__.pyo %%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/EMBL_General.mod.dtd %%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/GenBank_General.mod.dtd %%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/HomoloGene.dtd @@ -213,6 +183,7 @@ %%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/archivecustom-modules.ent %%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/articlemeta.ent %%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/backmatter.ent +%%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/bookdoc_100301.dtd %%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/chars.ent %%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/common.ent %%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/default-classes.ent @@ -272,9 +243,14 @@ %%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd %%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd %%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd +%%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd +%%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd %%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/nlmserials_080101.dtd +%%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/nlmserials_100101.dtd %%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd %%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd +%%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/pubmed_100301.dtd +%%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/pubmed_110101.dtd %%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/notat.ent %%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/para.ent %%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs/phrase.ent @@ -293,9 +269,6 @@ %%PYTHON_SITELIBDIR%%/Bio/Entrez/__init__.py %%PYTHON_SITELIBDIR%%/Bio/Entrez/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/Entrez/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/Enzyme/__init__.py -%%PYTHON_SITELIBDIR%%/Bio/Enzyme/__init__.pyc -%%PYTHON_SITELIBDIR%%/Bio/Enzyme/__init__.pyo %%PYTHON_SITELIBDIR%%/Bio/ExPASy/Enzyme.py %%PYTHON_SITELIBDIR%%/Bio/ExPASy/Enzyme.pyc %%PYTHON_SITELIBDIR%%/Bio/ExPASy/Enzyme.pyo @@ -320,18 +293,9 @@ %%PYTHON_SITELIBDIR%%/Bio/FSSP/fssp_rec.py %%PYTHON_SITELIBDIR%%/Bio/FSSP/fssp_rec.pyc %%PYTHON_SITELIBDIR%%/Bio/FSSP/fssp_rec.pyo -%%PYTHON_SITELIBDIR%%/Bio/Fasta/FastaAlign.py -%%PYTHON_SITELIBDIR%%/Bio/Fasta/FastaAlign.pyc -%%PYTHON_SITELIBDIR%%/Bio/Fasta/FastaAlign.pyo -%%PYTHON_SITELIBDIR%%/Bio/Fasta/__init__.py -%%PYTHON_SITELIBDIR%%/Bio/Fasta/__init__.pyc -%%PYTHON_SITELIBDIR%%/Bio/Fasta/__init__.pyo %%PYTHON_SITELIBDIR%%/Bio/File.py %%PYTHON_SITELIBDIR%%/Bio/File.pyc %%PYTHON_SITELIBDIR%%/Bio/File.pyo -%%PYTHON_SITELIBDIR%%/Bio/FilteredReader.py -%%PYTHON_SITELIBDIR%%/Bio/FilteredReader.pyc -%%PYTHON_SITELIBDIR%%/Bio/FilteredReader.pyo %%PYTHON_SITELIBDIR%%/Bio/GA/Crossover/General.py %%PYTHON_SITELIBDIR%%/Bio/GA/Crossover/General.pyc %%PYTHON_SITELIBDIR%%/Bio/GA/Crossover/General.pyo @@ -389,18 +353,6 @@ %%PYTHON_SITELIBDIR%%/Bio/GA/__init__.py %%PYTHON_SITELIBDIR%%/Bio/GA/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/GA/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/GFF/GenericTools.py -%%PYTHON_SITELIBDIR%%/Bio/GFF/GenericTools.pyc -%%PYTHON_SITELIBDIR%%/Bio/GFF/GenericTools.pyo -%%PYTHON_SITELIBDIR%%/Bio/GFF/__init__.py -%%PYTHON_SITELIBDIR%%/Bio/GFF/__init__.pyc -%%PYTHON_SITELIBDIR%%/Bio/GFF/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/GFF/binning.py -%%PYTHON_SITELIBDIR%%/Bio/GFF/binning.pyc -%%PYTHON_SITELIBDIR%%/Bio/GFF/binning.pyo -%%PYTHON_SITELIBDIR%%/Bio/GFF/easy.py -%%PYTHON_SITELIBDIR%%/Bio/GFF/easy.pyc -%%PYTHON_SITELIBDIR%%/Bio/GFF/easy.pyo %%PYTHON_SITELIBDIR%%/Bio/GenBank/LocationParser.py %%PYTHON_SITELIBDIR%%/Bio/GenBank/LocationParser.pyc %%PYTHON_SITELIBDIR%%/Bio/GenBank/LocationParser.pyo @@ -516,15 +468,6 @@ %%PYTHON_SITELIBDIR%%/Bio/LogisticRegression.py %%PYTHON_SITELIBDIR%%/Bio/LogisticRegression.pyc %%PYTHON_SITELIBDIR%%/Bio/LogisticRegression.pyo -%%PYTHON_SITELIBDIR%%/Bio/MEME/Motif.py -%%PYTHON_SITELIBDIR%%/Bio/MEME/Motif.pyc -%%PYTHON_SITELIBDIR%%/Bio/MEME/Motif.pyo -%%PYTHON_SITELIBDIR%%/Bio/MEME/Parser.py -%%PYTHON_SITELIBDIR%%/Bio/MEME/Parser.pyc -%%PYTHON_SITELIBDIR%%/Bio/MEME/Parser.pyo -%%PYTHON_SITELIBDIR%%/Bio/MEME/__init__.py -%%PYTHON_SITELIBDIR%%/Bio/MEME/__init__.pyc -%%PYTHON_SITELIBDIR%%/Bio/MEME/__init__.pyo %%PYTHON_SITELIBDIR%%/Bio/MarkovModel.py %%PYTHON_SITELIBDIR%%/Bio/MarkovModel.pyc %%PYTHON_SITELIBDIR%%/Bio/MarkovModel.pyo @@ -574,9 +517,6 @@ %%PYTHON_SITELIBDIR%%/Bio/NaiveBayes.py %%PYTHON_SITELIBDIR%%/Bio/NaiveBayes.pyc %%PYTHON_SITELIBDIR%%/Bio/NaiveBayes.pyo -%%PYTHON_SITELIBDIR%%/Bio/NetCatch.py -%%PYTHON_SITELIBDIR%%/Bio/NetCatch.pyc -%%PYTHON_SITELIBDIR%%/Bio/NetCatch.pyo %%PYTHON_SITELIBDIR%%/Bio/NeuralNetwork/BackPropagation/Layer.py %%PYTHON_SITELIBDIR%%/Bio/NeuralNetwork/BackPropagation/Layer.pyc %%PYTHON_SITELIBDIR%%/Bio/NeuralNetwork/BackPropagation/Layer.pyo @@ -794,6 +734,9 @@ %%PYTHON_SITELIBDIR%%/Bio/PopGen/GenePop/FileParser.py %%PYTHON_SITELIBDIR%%/Bio/PopGen/GenePop/FileParser.pyc %%PYTHON_SITELIBDIR%%/Bio/PopGen/GenePop/FileParser.pyo +%%PYTHON_SITELIBDIR%%/Bio/PopGen/GenePop/LargeFileParser.py +%%PYTHON_SITELIBDIR%%/Bio/PopGen/GenePop/LargeFileParser.pyc +%%PYTHON_SITELIBDIR%%/Bio/PopGen/GenePop/LargeFileParser.pyo %%PYTHON_SITELIBDIR%%/Bio/PopGen/GenePop/Utils.py %%PYTHON_SITELIBDIR%%/Bio/PopGen/GenePop/Utils.pyc %%PYTHON_SITELIBDIR%%/Bio/PopGen/GenePop/Utils.pyo @@ -828,21 +771,6 @@ %%PYTHON_SITELIBDIR%%/Bio/PopGen/__init__.py %%PYTHON_SITELIBDIR%%/Bio/PopGen/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/PopGen/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/PropertyManager.py -%%PYTHON_SITELIBDIR%%/Bio/PropertyManager.pyc -%%PYTHON_SITELIBDIR%%/Bio/PropertyManager.pyo -%%PYTHON_SITELIBDIR%%/Bio/Prosite/Pattern.py -%%PYTHON_SITELIBDIR%%/Bio/Prosite/Pattern.pyc -%%PYTHON_SITELIBDIR%%/Bio/Prosite/Pattern.pyo -%%PYTHON_SITELIBDIR%%/Bio/Prosite/Prodoc.py -%%PYTHON_SITELIBDIR%%/Bio/Prosite/Prodoc.pyc -%%PYTHON_SITELIBDIR%%/Bio/Prosite/Prodoc.pyo -%%PYTHON_SITELIBDIR%%/Bio/Prosite/__init__.py -%%PYTHON_SITELIBDIR%%/Bio/Prosite/__init__.pyc -%%PYTHON_SITELIBDIR%%/Bio/Prosite/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/Restriction/DNAUtils.py -%%PYTHON_SITELIBDIR%%/Bio/Restriction/DNAUtils.pyc -%%PYTHON_SITELIBDIR%%/Bio/Restriction/DNAUtils.pyo %%PYTHON_SITELIBDIR%%/Bio/Restriction/PrintFormat.py %%PYTHON_SITELIBDIR%%/Bio/Restriction/PrintFormat.pyc %%PYTHON_SITELIBDIR%%/Bio/Restriction/PrintFormat.pyo @@ -936,6 +864,9 @@ %%PYTHON_SITELIBDIR%%/Bio/SeqIO/TabIO.py %%PYTHON_SITELIBDIR%%/Bio/SeqIO/TabIO.pyc %%PYTHON_SITELIBDIR%%/Bio/SeqIO/TabIO.pyo +%%PYTHON_SITELIBDIR%%/Bio/SeqIO/UniprotIO.py +%%PYTHON_SITELIBDIR%%/Bio/SeqIO/UniprotIO.pyc +%%PYTHON_SITELIBDIR%%/Bio/SeqIO/UniprotIO.pyo %%PYTHON_SITELIBDIR%%/Bio/SeqIO/__init__.py %%PYTHON_SITELIBDIR%%/Bio/SeqIO/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/SeqIO/__init__.pyo @@ -1008,18 +939,9 @@ %%PYTHON_SITELIBDIR%%/Bio/SwissProt/KeyWList.py %%PYTHON_SITELIBDIR%%/Bio/SwissProt/KeyWList.pyc %%PYTHON_SITELIBDIR%%/Bio/SwissProt/KeyWList.pyo -%%PYTHON_SITELIBDIR%%/Bio/SwissProt/SProt.py -%%PYTHON_SITELIBDIR%%/Bio/SwissProt/SProt.pyc -%%PYTHON_SITELIBDIR%%/Bio/SwissProt/SProt.pyo %%PYTHON_SITELIBDIR%%/Bio/SwissProt/__init__.py %%PYTHON_SITELIBDIR%%/Bio/SwissProt/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/SwissProt/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/Transcribe.py -%%PYTHON_SITELIBDIR%%/Bio/Transcribe.pyc -%%PYTHON_SITELIBDIR%%/Bio/Transcribe.pyo -%%PYTHON_SITELIBDIR%%/Bio/Translate.py -%%PYTHON_SITELIBDIR%%/Bio/Translate.pyc -%%PYTHON_SITELIBDIR%%/Bio/Translate.pyo %%PYTHON_SITELIBDIR%%/Bio/UniGene/UniGene.py %%PYTHON_SITELIBDIR%%/Bio/UniGene/UniGene.pyc %%PYTHON_SITELIBDIR%%/Bio/UniGene/UniGene.pyo @@ -1038,30 +960,17 @@ %%PYTHON_SITELIBDIR%%/Bio/__init__.py %%PYTHON_SITELIBDIR%%/Bio/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/__init__.pyo -%%PYTHON_SITELIBDIR%%/Bio/cMarkovModel.so %%PYTHON_SITELIBDIR%%/Bio/cpairwise2.so %%PYTHON_SITELIBDIR%%/Bio/kNN.py %%PYTHON_SITELIBDIR%%/Bio/kNN.pyc %%PYTHON_SITELIBDIR%%/Bio/kNN.pyo -%%PYTHON_SITELIBDIR%%/Bio/listfns.py -%%PYTHON_SITELIBDIR%%/Bio/listfns.pyc -%%PYTHON_SITELIBDIR%%/Bio/listfns.pyo -%%PYTHON_SITELIBDIR%%/Bio/mathfns.py -%%PYTHON_SITELIBDIR%%/Bio/mathfns.pyc -%%PYTHON_SITELIBDIR%%/Bio/mathfns.pyo %%PYTHON_SITELIBDIR%%/Bio/pairwise2.py %%PYTHON_SITELIBDIR%%/Bio/pairwise2.pyc %%PYTHON_SITELIBDIR%%/Bio/pairwise2.pyo -%%PYTHON_SITELIBDIR%%/Bio/stringfns.py -%%PYTHON_SITELIBDIR%%/Bio/stringfns.pyc -%%PYTHON_SITELIBDIR%%/Bio/stringfns.pyo %%PYTHON_SITELIBDIR%%/Bio/trie.so %%PYTHON_SITELIBDIR%%/Bio/triefind.py %%PYTHON_SITELIBDIR%%/Bio/triefind.pyc %%PYTHON_SITELIBDIR%%/Bio/triefind.pyo -%%PYTHON_SITELIBDIR%%/Bio/utils.py -%%PYTHON_SITELIBDIR%%/Bio/utils.pyc -%%PYTHON_SITELIBDIR%%/Bio/utils.pyo %%PYTHON_SITELIBDIR%%/BioSQL/BioSeq.py %%PYTHON_SITELIBDIR%%/BioSQL/BioSeq.pyc %%PYTHON_SITELIBDIR%%/BioSQL/BioSeq.pyo @@ -1080,7 +989,6 @@ @dirrm %%PYTHON_SITELIBDIR%%/Bio/Affy @dirrm %%PYTHON_SITELIBDIR%%/Bio/Align/Applications @dirrm %%PYTHON_SITELIBDIR%%/Bio/Align -@dirrm %%PYTHON_SITELIBDIR%%/Bio/AlignAce @dirrm %%PYTHON_SITELIBDIR%%/Bio/AlignIO @dirrm %%PYTHON_SITELIBDIR%%/Bio/Alphabet @dirrm %%PYTHON_SITELIBDIR%%/Bio/Application @@ -1092,19 +1000,15 @@ @dirrm %%PYTHON_SITELIBDIR%%/Bio/Crystal @dirrm %%PYTHON_SITELIBDIR%%/Bio/Data @dirrm %%PYTHON_SITELIBDIR%%/Bio/Emboss -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Encodings @dirrm %%PYTHON_SITELIBDIR%%/Bio/Entrez/DTDs @dirrm %%PYTHON_SITELIBDIR%%/Bio/Entrez -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Enzyme @dirrm %%PYTHON_SITELIBDIR%%/Bio/ExPASy @dirrm %%PYTHON_SITELIBDIR%%/Bio/FSSP -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Fasta @dirrm %%PYTHON_SITELIBDIR%%/Bio/GA/Crossover @dirrm %%PYTHON_SITELIBDIR%%/Bio/GA/Mutation @dirrm %%PYTHON_SITELIBDIR%%/Bio/GA/Repair @dirrm %%PYTHON_SITELIBDIR%%/Bio/GA/Selection @dirrm %%PYTHON_SITELIBDIR%%/Bio/GA -@dirrm %%PYTHON_SITELIBDIR%%/Bio/GFF @dirrm %%PYTHON_SITELIBDIR%%/Bio/GenBank @dirrm %%PYTHON_SITELIBDIR%%/Bio/Geo @dirrm %%PYTHON_SITELIBDIR%%/Bio/Graphics/GenomeDiagram @@ -1116,7 +1020,6 @@ @dirrm %%PYTHON_SITELIBDIR%%/Bio/KEGG/Enzyme @dirrm %%PYTHON_SITELIBDIR%%/Bio/KEGG/Map @dirrm %%PYTHON_SITELIBDIR%%/Bio/KEGG -@dirrm %%PYTHON_SITELIBDIR%%/Bio/MEME @dirrm %%PYTHON_SITELIBDIR%%/Bio/Medline @dirrm %%PYTHON_SITELIBDIR%%/Bio/Motif/Applications @dirrm %%PYTHON_SITELIBDIR%%/Bio/Motif/Parsers @@ -1138,7 +1041,6 @@ @dirrm %%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal/data @dirrm %%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal @dirrm %%PYTHON_SITELIBDIR%%/Bio/PopGen -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Prosite @dirrm %%PYTHON_SITELIBDIR%%/Bio/Restriction/_Update @dirrm %%PYTHON_SITELIBDIR%%/Bio/Restriction @dirrm %%PYTHON_SITELIBDIR%%/Bio/SCOP >Release-Note: >Audit-Trail: >Unformatted:
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