Date: Tue, 4 Apr 2017 05:19:53 +0000 (UTC) From: David Naylor <dbn@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r437680 - head/science/vmd/files Message-ID: <201704040519.v345JrpU083646@repo.freebsd.org>
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Author: dbn Date: Tue Apr 4 05:19:52 2017 New Revision: 437680 URL: https://svnweb.freebsd.org/changeset/ports/437680 Log: science/vmd: unbreak build - Remove patches that are not required with the new sources for stride - Add stride license test Added: head/science/vmd/files/patch-lib_stride_Makefile (contents, props changed) head/science/vmd/files/stride.txt (contents, props changed) Deleted: head/science/vmd/files/patch-plugins__hesstrans__Makefile head/science/vmd/files/patch-stride.c head/science/vmd/files/patch-stride.h head/science/vmd/files/patch-stride_Makefile Added: head/science/vmd/files/patch-lib_stride_Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/vmd/files/patch-lib_stride_Makefile Tue Apr 4 05:19:52 2017 (r437680) @@ -0,0 +1,26 @@ +--- lib/stride/Makefile.orig 2003-04-08 12:03:14 UTC ++++ lib/stride/Makefile +@@ -1,12 +1,12 @@ + #FLAGS = -lm -L/usr/pub/lib -lefence -o + #CC = cc -O2 -fullwarn -TENV:large_GOT + #CC = cc -g -Wall +-CC = gcc -O2 # at least for SunOS ++#CC = gcc -O2 # at least for SunOS + #CC = cc -g + + #CC = cc -O2 -fullwarn + +-#CC = cc -O2 ++CC = cc ${CFLAGS} -O2 + FLAGS = -lm -o + + SOURCE = stride.c splitstr.c rdpdb.c initchn.c geometry.c thr2one.c one2thr.c filename.c tolostr.c strutil.c place_h.c hbenergy.c memory.c helix.c sheet.c rdmap.c phipsi.c command.c molscr.c die.c hydrbond.c mergepat.c fillasn.c escape.c p_jrnl.c p_rem.c p_atom.c p_helix.c p_sheet.c p_turn.c p_ssbond.c p_expdta.c p_model.c p_compnd.c report.c nsc.c area.c ssbond.c chk_res.c chk_atom.c turn.c pdbasn.c dssp.c outseq.c chkchain.c elem.c measure.c asngener.c p_endmdl.c stred.c contact_order.c contact_map.c +@@ -20,7 +20,7 @@ BINDIR = . + + + stride : $(OBJECT) +- $(CC) $(OBJECT) $(FLAGS) $(BINDIR)/stride${ARCH} ++ $(CC) $(OBJECT) $(FLAGS) $(BINDIR)/stride + + $(OBJECT) : stride.h protot.h + Added: head/science/vmd/files/stride.txt ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/vmd/files/stride.txt Tue Apr 4 05:19:52 2017 (r437680) @@ -0,0 +1,24 @@ +All rights reserved, whether the whole or part of the program is +concerned. Permission to use, copy, and modify this software and its +documentation is granted for academic use, provided that: + + i. this copyright notice appears in all copies of the software and + related documentation; + + ii. the reference given below (Frishman and Argos, 1995) must be + cited in any publication of scientific results based in part or + completely on the use of the program; + +iii. bugs will be reported to the authors. + +The use of the software in commercial activities is not allowed +without a prior written commercial license agreement. + +WARNING: STRIDE is provided "as-is" and without warranty of any kind, +express, implied or otherwise, including without limitation any +warranty of merchantability or fitness for a particular purpose. In no +event will the authors be liable for any special, incidental, indirect +or consequential damages of any kind, or any damages whatsoever +resulting from loss of data or profits, whether or not advised of the +possibility of damage, and on any theory of liability, arising out of +or in connection with the use or performance of this software.
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