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Date:      Sat, 24 Jul 2021 03:42:15 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - 130releng-riscv64-quarterly][biology/star] Failed for rna-STAR-2.7.3.a_1 in build
Message-ID:  <202107240342.16O3gFkj084365@beefy7.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     jwb@FreeBSD.org
Log URL:        http://beefy7.nyi.freebsd.org/data/130releng-riscv64-quarterly/2e72ae10199f/logs/rna-STAR-2.7.3.a_1.log
Build URL:      http://beefy7.nyi.freebsd.org/build.html?mastername=130releng-riscv64-quarterly&build=2e72ae10199f
Log:

=>> Building biology/star
build started at Sat Jul 24 03:41:41 UTC 2021
port directory: /usr/ports/biology/star
package name: rna-STAR-2.7.3.a_1
building for: FreeBSD 130releng-riscv64-quarterly-job-02 13.0-RELEASE-p3 FreeBSD 13.0-RELEASE-p3 1300139 riscv
maintained by: jwb@FreeBSD.org
Makefile ident: 
Poudriere version: 3.2.8-8-gaf08dbda
Host OSVERSION: 1400008
Jail OSVERSION: 1300139
Job Id: 02

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jwb@FreeBSD.org
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--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/star/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/star/work  HOME=/wrkdirs/usr/ports/biology/star/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/star/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
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--MAKE_ENV--
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--End PLIST_SUB--

--SUB_LIST--
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=======================<phase: check-sanity   >============================
===>  License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   rna-STAR-2.7.3.a_1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.16.3.txz
[130releng-riscv64-quarterly-job-02] Installing pkg-1.16.3...
[130releng-riscv64-quarterly-job-02] Extracting pkg-1.16.3: .......... done
===>   rna-STAR-2.7.3.a_1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of rna-STAR-2.7.3.a_1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by rna-STAR-2.7.3.a_1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by rna-STAR-2.7.3.a_1 for building
=> SHA256 Checksum OK for alexdobin-STAR-2.7.3a_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by rna-STAR-2.7.3.a_1 for building
===>  Extracting for rna-STAR-2.7.3.a_1
=> SHA256 Checksum OK for alexdobin-STAR-2.7.3a_GH0.tar.gz.
===========================================================================
<snip>
In file included from ./Transcriptome.h:6:
./IncludeDefine.h:24:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 error generated.
In file included from Transcriptome_geneCountsAddAlign.cpp:1:
In file included from ./Transcriptome.h:6:
./IncludeDefine.h:24:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 error generated.
In file included from Transcriptome_geneFullAlignOverlap.cpp:1:
In file included from ./Transcriptome.h:6:
./IncludeDefine.h:24:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 error generated.
In file included from Transcriptome_quantAlign.cpp:1:
In file included from ./Transcriptome.h:6:
./IncludeDefine.h:24:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 error generated.
In file included from Variation.cpp:1:
In file included from ./Variation.h:4:
./IncludeDefine.h:24:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 error generated.
In file included from alignSmithWaterman.cpp:1:
./IncludeDefine.h:24:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 error generated.
In file included from bamRemoveDuplicates.cpp:2:
In file included from ./bamRemoveDuplicates.h:4:
In file included from ./Parameters.h:4:
./IncludeDefine.h:24:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 error generated.
In file included from bamSortByCoordinate.cpp:1:
In file included from ./bamSortByCoordinate.h:4:
In file included from ./Parameters.h:4:
./IncludeDefine.h:24:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 error generated.
In file included from binarySearch2.cpp:1:
In file included from ./binarySearch2.h:4:
./IncludeDefine.h:24:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 error generated.
In file included from blocksOverlap.cpp:1:
In file included from ./blocksOverlap.h:4:
./IncludeDefine.h:24:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 error generated.
In file included from extendAlign.cpp:1:
./IncludeDefine.h:24:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 error generated.
In file included from genomeParametersWrite.cpp:1:
In file included from ./genomeParametersWrite.h:4:
In file included from ./Parameters.h:4:
./IncludeDefine.h:24:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 error generated.
In file included from genomeSAindex.cpp:1:
In file included from ./genomeSAindex.h:3:
In file included from ./PackedArray.h:4:
./IncludeDefine.h:24:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 error generated.
In file included from genomeScanFastaFiles.cpp:1:
In file included from ./genomeScanFastaFiles.h:4:
In file included from ./Parameters.h:4:
./IncludeDefine.h:24:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 error generated.
In file included from insertSeqSA.cpp:5:
In file included from ./insertSeqSA.h:4:
./IncludeDefine.h:24:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 error generated.
In file included from loadGTF.cpp:1:
In file included from ./loadGTF.h:4:
In file included from ./Parameters.h:4:
./IncludeDefine.h:24:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 error generated.
In file included from mapThreadsSpawn.cpp:1:
In file included from ./mapThreadsSpawn.h:3:
In file included from ./Parameters.h:4:
./IncludeDefine.h:24:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 error generated.
In file included from outputSJ.cpp:1:
In file included from ./ReadAlignChunk.h:4:
./IncludeDefine.h:24:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 error generated.
In file included from readLoad.cpp:1:
In file included from ./readLoad.h:4:
./IncludeDefine.h:24:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 error generated.
In file included from serviceFuns.cpp:4:
./IncludeDefine.h:24:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 error generated.
In file included from signalFromBAM.cpp:1:
In file included from ./signalFromBAM.h:6:
In file included from ./Stats.h:4:
./IncludeDefine.h:24:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 error generated.
In file included from sjAlignSplit.cpp:1:
./IncludeDefine.h:24:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 error generated.
In file included from sjdbBuildIndex.cpp:1:
In file included from ./sjdbBuildIndex.h:4:
In file included from ./Parameters.h:4:
./IncludeDefine.h:24:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 error generated.
In file included from sjdbInsertJunctions.cpp:1:
In file included from ./sjdbInsertJunctions.h:4:
In file included from ./Parameters.h:4:
./IncludeDefine.h:24:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 error generated.
In file included from sjdbLoadFromFiles.cpp:1:
In file included from ./sjdbLoadFromFiles.h:5:
In file included from ./SjdbClass.h:4:
./IncludeDefine.h:24:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 error generated.
In file included from sjdbLoadFromStream.cpp:1:
In file included from ./sjdbLoadFromStream.h:5:
In file included from ./SjdbClass.h:4:
./IncludeDefine.h:24:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 error generated.
In file included from sjdbPrepare.cpp:1:
In file included from ./sjdbPrepare.h:4:
In file included from ./SjdbClass.h:4:
./IncludeDefine.h:24:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 error generated.
In file included from stitchAlignToTranscript.cpp:1:
./IncludeDefine.h:24:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 error generated.
In file included from stitchGapIndel.cpp:1:
./IncludeDefine.h:24:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 error generated.
In file included from stitchWindowAligns.cpp:1:
In file included from ./stitchWindowAligns.h:1:
./IncludeDefine.h:24:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 error generated.
In file included from streamFuns.cpp:1:
In file included from ./streamFuns.h:4:
In file included from ./Parameters.h:4:
./IncludeDefine.h:24:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 error generated.
Makefile:104: Depend.list: No such file or directory
gmake[1]: *** [Makefile:103: Depend.list] Error 1
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/star/work/STAR-2.7.3a/source'
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/star



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