Date: Tue, 28 Nov 2017 15:21:01 +0000 (UTC) From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r455045 - head/biology/bwa Message-ID: <201711281521.vASFL1Co031082@repo.freebsd.org>
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Author: jwb Date: Tue Nov 28 15:21:01 2017 New Revision: 455045 URL: https://svnweb.freebsd.org/changeset/ports/455045 Log: biology/bwa: Upgrade to 0.7.17 Approved by: jrm (mentor) Differential Revision: https://reviews.freebsd.org/D13283 Modified: head/biology/bwa/Makefile head/biology/bwa/distinfo Modified: head/biology/bwa/Makefile ============================================================================== --- head/biology/bwa/Makefile Tue Nov 28 15:16:38 2017 (r455044) +++ head/biology/bwa/Makefile Tue Nov 28 15:21:01 2017 (r455045) @@ -2,24 +2,28 @@ # $FreeBSD$ PORTNAME= bwa -PORTVERSION= 0.7.9a +PORTVERSION= 0.7.17 +DISTVERSIONPREFIX=v CATEGORIES= biology -MASTER_SITES= SF/bio-bwa/ MAINTAINER= bacon4000@gmail.com COMMENT= Burrows-Wheeler sequence aligner LICENSE= GPLv3 +# From 0.7.9a: Recheck for 0.7.17. BROKEN_aarch64= fails to compile: invalid conversion between vector type and integer type BROKEN_armv6= fails to compile: invalid conversion between vector type and integer type BROKEN_mips= fails to compile: cc1: unrecognized command line option "-msse2" BROKEN_mips64= fails to compile: cc1: unrecognized command line option "-msse2" BROKEN_powerpc64= fails to compile: ksw.c: emmintrin.h: No such file or directory -USES= perl5 shebangfix tar:bzip2 +USES= gmake perl5 shebangfix tar:bzip2 SHEBANG_FILES= qualfa2fq.pl xa2multi.pl USE_PERL5= run + +USE_GITHUB= yes +GH_ACCOUNT= lh3 PLIST_FILES= bin/bwa bin/qualfa2fq.pl bin/xa2multi.pl man/man1/bwa.1.gz Modified: head/biology/bwa/distinfo ============================================================================== --- head/biology/bwa/distinfo Tue Nov 28 15:16:38 2017 (r455044) +++ head/biology/bwa/distinfo Tue Nov 28 15:21:01 2017 (r455045) @@ -1,2 +1,3 @@ -SHA256 (bwa-0.7.9a.tar.bz2) = f5ad30e4e5ea86a8dcd6febcb6f620a75c82b03024f64a572017c295a962eadc -SIZE (bwa-0.7.9a.tar.bz2) = 166193 +TIMESTAMP = 1511844744 +SHA256 (lh3-bwa-v0.7.17_GH0.tar.gz) = 980b9591b61c60042c4a39b9e31ccaad8d17ff179d44d347997825da3fdf47fd +SIZE (lh3-bwa-v0.7.17_GH0.tar.gz) = 232593
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