Date: Tue, 8 Jun 2004 17:33:50 -0300 (ART) From: Fernan Aguero <fernan@iib.unsam.edu.ar> To: FreeBSD-gnats-submit@FreeBSD.org Cc: tonym@biolateral.com.au Subject: ports/67735: biology/ncbi-toolkit does not build bl2seq Message-ID: <200406082033.i58KXo5d008519@pi.iib.unsam.edu.ar> Resent-Message-ID: <200406090410.i594ANEV038141@freefall.freebsd.org>
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>Number: 67735 >Category: ports >Synopsis: biology/ncbi-toolkit does not build bl2seq >Confidential: no >Severity: serious >Priority: medium >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: sw-bug >Submitter-Id: current-users >Arrival-Date: Wed Jun 09 04:10:22 GMT 2004 >Closed-Date: >Last-Modified: >Originator: Fernan Aguero >Release: FreeBSD 4.10-RELEASE i386 >Organization: IIB-UNSAM >Environment: FreeBSD pi.iib.unsam.edu.ar 4.10-RELEASE FreeBSD 4.10-RELEASE #0: Wed May 26 12:56:43 ART 2004 fernan@pi.iib.unsam.edu.ar:/usr/obj/usr/src/sys/PI i386 >Description: The standard build of ncbi-toolkit does not produce the executable bl2seq, which is part of the toolkit. The source bl2seq.c is present under ncbi/build/, it is not compiled, and obviously it is not installed (bin/bl2seq is not listed in pkg-plist). However, I do remember using bl2seq about a year ago, and can see it in an old pkg-plist. The ncbi-toolkit has been updated, so perhaps this is already fixed in the new version?. I'm downloading the tarball now, but will not have time to work on it until late next week. >How-To-Repeat: cd /usr/ports/biology/ncbi-toolkit make ls work/ncbi/build/bl2seq* you'll see just bl2seq.c (not bl2seq.o, not bl2seq) >Fix: >Release-Note: >Audit-Trail: >Unformatted:
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