Date: Tue, 23 Jan 2018 06:57:22 GMT From: pkg-fallout@FreeBSD.org To: tzhuan@gmail.com Cc: pkg-fallout@FreeBSD.org Subject: [package - head-amd64-default][math/libtsnnls] Failed for libtsnnls-2.3.3_7 in configure Message-ID: <201801230657.w0N6vMBq065588@beefy12.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: tzhuan@gmail.com Last committer: gerald@FreeBSD.org Ident: $FreeBSD: head/math/libtsnnls/Makefile 449591 2017-09-10 20:55:38Z gerald $ Log URL: http://beefy12.nyi.freebsd.org/data/head-amd64-default/p459717_s328266/logs/libtsnnls-2.3.3_7.log Build URL: http://beefy12.nyi.freebsd.org/build.html?mastername=head-amd64-default&build=p459717_s328266 Log: =>> Building math/libtsnnls build started at Tue Jan 23 06:57:00 UTC 2018 port directory: /usr/ports/math/libtsnnls package name: libtsnnls-2.3.3_7 building for: FreeBSD head-amd64-default-job-11 12.0-CURRENT FreeBSD 12.0-CURRENT 1200056 amd64 maintained by: tzhuan@gmail.com Makefile ident: $FreeBSD: head/math/libtsnnls/Makefile 449591 2017-09-10 20:55:38Z gerald $ Poudriere version: 3.2.4 Host OSVERSION: 1200054 Jail OSVERSION: 1200056 Job Id: 11 !!! Jail is newer than host. (Jail: 1200056, Host: 1200054) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh OSVERSION=1200056 UNAME_v=FreeBSD 12.0-CURRENT 1200056 UNAME_r=12.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/head-amd64-default/ref PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk OLDPWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS PWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p/pool MASTERNAME=head-amd64-default SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root P_PYTHON_MAJOR_VER=2 POUDRIERE_VERSION=3.2.4 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for libtsnnls-2.3.3_7: ATLAS=off: Use atlas (conflict with USE_GOTOBLAS) GOTOBLAS=off: Use gotoblas (conflict with USE_ATLAS) ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- tzhuan@gmail.com --End MAINTAINER-- --CONFIGURE_ARGS-- --with-blas="-lblas" --with-lapack="-llapack" --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran6" FC="gfortran6" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc6" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc6" XDG_DATA_HOME=/wrkdirs/usr/ports/math/libtsnnls/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/libtsnnls/work HOME=/wrkdirs/usr/ports/math/libtsnnls/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/libtsnnls/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran6" FC="gfortran6" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc6" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc6" XDG_DATA_HOME=/wrkdirs/usr/ports/math/libtsnnls/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/libtsnnls/work HOME=/wrkdirs/usr/ports/math/libtsnnls/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/libtsnnls/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc6 -L/usr/local/lib/gcc6 -B/usr/local/bin -fstack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" PORTEXAMPLES="" OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/libtsnnls" EXAMPLESDIR="share/examples/libtsnnls" DATADIR="share/libtsnnls" WWWDIR="www/libtsnnls" ETCDIR="etc/libtsnnls" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/libtsnnls DOCSDIR=/usr/local/share/doc/libtsnnls EXAMPLESDIR=/usr/local/share/examples/libtsnnls WWWDIR=/usr/local/www/libtsnnls ETCDIR=/usr/local/etc/libtsnnls --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### ARCH=amd64 CONFIGURE_MAX_CMD_LEN=262144 HAVE_COMPAT_IA32_KERN=YES OPSYS=FreeBSD OSREL=12.0 OSVERSION=1200056 PYTHONBASE=/usr/local UID=0 _OSRELEASE=12.0-CURRENT #### Misc Poudriere #### GID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ =========================================================================== =======================<phase: pkg-depends >============================ ===> libtsnnls-2.3.3_7 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.4.txz [head-amd64-default-job-11] Installing pkg-1.10.4... [head-amd64-default-job-11] Extracting pkg-1.10.4: .......... done ===> libtsnnls-2.3.3_7 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of libtsnnls-2.3.3_7 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> Fetching all distfiles required by libtsnnls-2.3.3_7 for building =========================================================================== =======================<phase: checksum >============================ ===> Fetching all distfiles required by libtsnnls-2.3.3_7 for building => SHA256 Checksum OK for libtsnnls-2.3.3.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> Fetching all distfiles required by libtsnnls-2.3.3_7 for building ===> Extracting for libtsnnls-2.3.3_7 => SHA256 Checksum OK for libtsnnls-2.3.3.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for libtsnnls-2.3.3_7 =========================================================================== =======================<phase: build-depends >============================ ===> libtsnnls-2.3.3_7 depends on executable: gfortran6 - not found ===> Installing existing package /packages/All/gcc6-6.4.0_3.txz [head-amd64-default-job-11] Installing gcc6-6.4.0_3... [head-amd64-default-job-11] `-- Installing binutils-2.28,1... [head-amd64-default-job-11] | `-- Installing gettext-runtime-0.19.8.1_1... [head-amd64-default-job-11] | | `-- Installing indexinfo-0.3.1... [head-amd64-default-job-11] | | `-- Extracting indexinfo-0.3.1: .... done [head-amd64-default-job-11] | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done [head-amd64-default-job-11] `-- Extracting binutils-2.28,1: .......... done [head-amd64-default-job-11] `-- Installing gcc-ecj-4.5... [head-amd64-default-job-11] `-- Extracting gcc-ecj-4.5: . done [head-amd64-default-job-11] `-- Installing gmp-6.1.2... [head-amd64-default-job-11] `-- Extracting gmp-6.1.2: .......... done [head-amd64-default-job-11] `-- Installing mpc-1.0.3... [head-amd64-default-job-11] | `-- Installing mpfr-3.1.6... [head-amd64-default-job-11] | `-- Extracting mpfr-3.1.6: .......... done [head-amd64-default-job-11] `-- Extracting mpc-1.0.3: ...... done [head-amd64-default-job-11] Extracting gcc6-6.4.0_3: .......... done Message from gcc6-6.4.0_3: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc6 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> libtsnnls-2.3.3_7 depends on executable: gfortran6 - found ===> Returning to build of libtsnnls-2.3.3_7 ===> libtsnnls-2.3.3_7 depends on file: /usr/local/bin/as - found =========================================================================== =======================<phase: lib-depends >============================ ===> libtsnnls-2.3.3_7 depends on shared library: libblas.so - not found ===> Installing existing package /packages/All/blas-3.5.0_3.txz [head-amd64-default-job-11] Installing blas-3.5.0_3... [head-amd64-default-job-11] Extracting blas-3.5.0_3: ....... done ===> libtsnnls-2.3.3_7 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so) ===> Returning to build of libtsnnls-2.3.3_7 ===> libtsnnls-2.3.3_7 depends on shared library: liblapack.so - not found ===> Installing existing package /packages/All/lapack-3.5.0_3.txz [head-amd64-default-job-11] Installing lapack-3.5.0_3... [head-amd64-default-job-11] Extracting lapack-3.5.0_3: .......... done ===> libtsnnls-2.3.3_7 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so) ===> Returning to build of libtsnnls-2.3.3_7 =========================================================================== =======================<phase: configure >============================ ===> Configuring for libtsnnls-2.3.3_7 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/math/libtsnnls/work/libtsnnls-2.3.3/aclocal.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/math/libtsnnls/work/libtsnnls-2.3.3/configure configure: loading site script /usr/ports/Templates/config.site checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether make sets $(MAKE)... yes checking for gcc... cc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of cc... gcc3 checking build system type... amd64-portbld-freebsd12.0 checking host system type... amd64-portbld-freebsd12.0 checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for ld used by cc... /usr/local/bin/ld checking if the linker (/usr/local/bin/ld) is GNU ld... yes checking for /usr/local/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/local/bin/nm checking whether ln -s works... yes checking how to recognize dependent libraries... pass_all checking how to run the C preprocessor... cpp checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for dlfcn.h... (cached) yes checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking dependency style of c++... gcc3 checking how to run the C++ preprocessor... c++ -E checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran6 accepts -g... yes checking the maximum length of command line arguments... (cached) 262144 checking command to parse /usr/local/bin/nm output from cc object... ok checking for objdir... .libs checking for ar... /usr/local/bin/ar checking for ranlib... /usr/local/bin/ranlib checking for strip... strip checking if cc supports -fno-rtti -fno-exceptions... yes checking for cc option to produce PIC... -fPIC checking if cc PIC flag -fPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking whether the cc linker (/usr/local/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... freebsd12.0 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by c++... /usr/local/bin/ld checking if the linker (/usr/local/bin/ld) is GNU ld... yes checking whether the c++ linker (/usr/local/bin/ld) supports shared libraries... yes checking for c++ option to produce PIC... -fPIC checking if c++ PIC flag -fPIC works... yes checking if c++ static flag -static works... yes checking if c++ supports -c -o file.o... yes checking whether the c++ linker (/usr/local/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... freebsd12.0 ld.so (cached) (cached) checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran6 option to produce PIC... -fPIC checking if gfortran6 PIC flag -fPIC works... yes checking if gfortran6 static flag -static works... yes checking if gfortran6 supports -c -o file.o... yes checking whether the gfortran6 linker (/usr/local/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... freebsd12.0 ld.so (cached) (cached) checking how to hardcode library paths into programs... immediate checking for cos in -lm... yes checking for memset... (cached) yes checking for memcpy... (cached) yes checking for rand... (cached) yes checking for srand... (cached) yes checking for time... (cached) yes checking for isnormal... no checking for isnan... yes checking whether we are using the GNU Fortran compiler... yes checking whether gfortran6 accepts -g... yes checking how to get verbose linking output from gfortran6... -v checking for Fortran libraries of gfortran6... -L/usr/local/lib -L/usr/local/lib/gcc6 -L/usr/local/bin -L/usr/local/lib/gcc6/gcc/x86_64-portbld-freebsd12.0/6.4.0 -L/usr/local/lib/gcc6/gcc/x86_64-portbld-freebsd12.0/6.4.0/../../../../../x86_64-portbld-freebsd12.0/lib -L/usr/local/lib/gcc6/gcc/x86_64-portbld-freebsd12.0/6.4.0/../../.. -lgfortran -lm -lssp_nonshared -lquadmath checking host system type... (cached) amd64-portbld-freebsd12.0 checking how to link with BLAS and LAPACK... linux checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking for sgemm_ in -lblas... yes checking for cheev_ in -llapack... yes checking for minimal ATLAS lapack... checking name of daxpy after mangling... daxpy_ checking name of dsyrk after mangling... dsyrk_ checking name of dsymv after mangling... dsymv_ checking name of dgemm after mangling... dgemm_ checking name of dgemv after mangling... dgemv_ checking name of dtrsm after mangling... dtrsm_ checking name of dpotrf after mangling... dpotrf_ checking name of dgels after mangling... dgels_ checking name of dnrm2 after mangling... dnrm2_ checking name of ddot after mangling... ddot_ checking name of dscal after mangling... dscal_ checking for arg_parse in -largtable2... no checking for ANSI C header files... (cached) yes checking clapack.h usability... no checking clapack.h presence... no checking for clapack.h... no checking vecLib/clapack.h usability... no checking vecLib/clapack.h presence... no checking for vecLib/clapack.h... no checking atlas/clapack.h usability... no checking atlas/clapack.h presence... no checking for atlas/clapack.h... no checking for string.h... (cached) yes checking for float.h... (cached) yes checking for stdlib.h... (cached) yes checking for stdio.h... (cached) yes checking for sys/time.h... (cached) yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking for limits.h... (cached) yes checking for math.h... (cached) yes checking for time.h... (cached) yes checking for ctype.h... (cached) yes checking argtable2.h usability... no checking argtable2.h presence... no checking for argtable2.h... no checking for an ANSI C-conforming const... yes checking size of int... configure: error: in `/wrkdirs/usr/ports/math/libtsnnls/work/libtsnnls-2.3.3': configure: error: cannot compute sizeof (int) See `config.log' for more details. ===> Script "configure" failed unexpectedly. Please report the problem to tzhuan@gmail.com [maintainer] and attach the "/wrkdirs/usr/ports/math/libtsnnls/work/libtsnnls-2.3.3/config.log" including the output of the failure of your make command. Also, it might be a good idea to provide an overview of all packages installed on your system (e.g. a /usr/local/sbin/pkg-static info -g -Ea). *** Error code 1 Stop. make: stopped in /usr/ports/math/libtsnnls
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