Date: Tue, 24 Feb 2015 11:42:54 +0000 (UTC) From: Alexey Dokuchaev <danfe@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r379787 - head/biology/ugene Message-ID: <201502241142.t1OBgsm9064485@svn.freebsd.org>
next in thread | raw e-mail | index | archive | help
Author: danfe Date: Tue Feb 24 11:42:53 2015 New Revision: 379787 URL: https://svnweb.freebsd.org/changeset/ports/379787 QAT: https://qat.redports.org/buildarchive/r379787/ Log: Update Unipro UGENE to version 1.16.0 (documentation was also rerolled). Modified: head/biology/ugene/Makefile head/biology/ugene/distinfo head/biology/ugene/pkg-plist Modified: head/biology/ugene/Makefile ============================================================================== --- head/biology/ugene/Makefile Tue Feb 24 11:41:59 2015 (r379786) +++ head/biology/ugene/Makefile Tue Feb 24 11:42:53 2015 (r379787) @@ -2,7 +2,7 @@ # $FreeBSD$ PORTNAME= ugene -DISTVERSION= 1.15.1 +DISTVERSION= 1.16.0 CATEGORIES= biology science MASTER_SITES= http://ugene.unipro.ru/downloads/ DISTFILES= ${DISTNAME}${EXTRACT_SUFX} QueryDesigner_UserManual.pdf \ @@ -71,6 +71,8 @@ post-patch: ${WRKSRC}/src/plugins_3rdparty/ball/src/include/BALL/DATATYPE/string.h @${REINPLACE_CMD} -e 's|-bit version|& for ${OPSYS}|' \ ${WRKSRC}/src/ugeneui/src/main_window/AboutDialogController.cpp + @${REINPLACE_CMD} -e '/ifdef/s|Q_OS_LINUX|Q_OS_UNIX|' \ + ${WRKSRC}/src/corelibs/U2Test/src/gui_tests/GUITestLauncher.cpp .for x in ugenecl ugeneui plugins_checker @${ECHO_CMD} 'LIBS += -lexecinfo' >> ${WRKSRC}/src/${x}/${x}.pro .endfor Modified: head/biology/ugene/distinfo ============================================================================== --- head/biology/ugene/distinfo Tue Feb 24 11:41:59 2015 (r379786) +++ head/biology/ugene/distinfo Tue Feb 24 11:42:53 2015 (r379787) @@ -1,8 +1,8 @@ -SHA256 (ugene/ugene-1.15.1.tar.gz) = ac065ed7352eaa2aae137f0745f9aecfaf87c736597ee5bef6e65bd8c752b205 -SIZE (ugene/ugene-1.15.1.tar.gz) = 20208866 -SHA256 (ugene/QueryDesigner_UserManual.pdf) = cc82121ae7564fb314aba545ae61336c5301b8c70b1fe92d5cec4208bae77c40 -SIZE (ugene/QueryDesigner_UserManual.pdf) = 824749 -SHA256 (ugene/UniproUGENE_UserManual.pdf) = 013e9f2ef3f23976e2f1e76ccb7b71b0fe77b1756bda5dc28896cb23dc855bf2 -SIZE (ugene/UniproUGENE_UserManual.pdf) = 12156826 -SHA256 (ugene/WorkflowDesigner_UserManual.pdf) = a0fbc5b3919959901ef285a2f7cabbd3c34fe5d93c6377f3aec905c2ed2717e7 -SIZE (ugene/WorkflowDesigner_UserManual.pdf) = 11782902 +SHA256 (ugene/ugene-1.16.0.tar.gz) = ea87019d12d2db07932e510ccd935eed1a59e6ddc71cdee3b21bb7e2fd060878 +SIZE (ugene/ugene-1.16.0.tar.gz) = 20390008 +SHA256 (ugene/QueryDesigner_UserManual.pdf) = d261125f8ad155ae022a47ecf504febfb45ae7740f822be9b0c508219bb732fb +SIZE (ugene/QueryDesigner_UserManual.pdf) = 824789 +SHA256 (ugene/UniproUGENE_UserManual.pdf) = 94683abe849eecc88735d7748e75f4e30051d1dc8a6b148dbeb3d2ac4ed02a1d +SIZE (ugene/UniproUGENE_UserManual.pdf) = 13237321 +SHA256 (ugene/WorkflowDesigner_UserManual.pdf) = 9dec38e2e5c89f6dbde328bf5ef17d81f5d1309812b8d2c5cf5864c1ad159eff +SIZE (ugene/WorkflowDesigner_UserManual.pdf) = 22805160 Modified: head/biology/ugene/pkg-plist ============================================================================== --- head/biology/ugene/pkg-plist Tue Feb 24 11:41:59 2015 (r379786) +++ head/biology/ugene/pkg-plist Tue Feb 24 11:42:53 2015 (r379787) @@ -320,9 +320,12 @@ lib/ugene/ugenem lib/ugene/ugeneui man/man1/ugene.1.gz share/applications/ugene.desktop +share/icons/application-x-ugene-ext.png +share/mime/application-x-ugene.xml share/pixmaps/ugene.png share/pixmaps/ugene.xpm %%DATADIR%%/DBXRefRegistry.txt +%%DATADIR%%/adapters/adapters.fasta %%DATADIR%%/back_translation/Bacteria/Arthrobacter_aurescens_TC1.cut %%DATADIR%%/back_translation/Bacteria/Bacillus_subtilis.cut %%DATADIR%%/back_translation/Bacteria/Escherichia_coli.cut @@ -1416,6 +1419,7 @@ share/pixmaps/ugene.xpm %%DATADIR%%/workflow_samples/NGS/consensus.uwl %%DATADIR%%/workflow_samples/NGS/extract_coverage.uwl %%DATADIR%%/workflow_samples/NGS/extract_transcript_seq.uwl +%%DATADIR%%/workflow_samples/NGS/fastqc.uwl %%DATADIR%%/workflow_samples/NGS/raw_chip.uwl %%DATADIR%%/workflow_samples/NGS/raw_dna.uwl %%DATADIR%%/workflow_samples/NGS/raw_ngs/chipseq/chipseq_paired.uwl @@ -1434,6 +1438,8 @@ share/pixmaps/ugene.xpm %%DATADIR%%/workflow_samples/NGS/tuxedo/tuxedo_single_dataset.uwl %%DATADIR%%/workflow_samples/NGS/tuxedo/tuxedo_single_dataset_paired.uwl %%DATADIR%%/workflow_samples/NGS/tuxedo.uwl +%%DATADIR%%/workflow_samples/NGS/variation_annotation.uwl +%%DATADIR%%/workflow_samples/Sanger sequencing/trim-and-align.uwl %%DATADIR%%/workflow_samples/Scenarios/filter_matched.uwl %%DATADIR%%/workflow_samples/Scenarios/find_inverted_repeats.uwl %%DATADIR%%/workflow_samples/Scenarios/find_sequences.uwl @@ -1450,3 +1456,4 @@ share/pixmaps/ugene.xpm %%DATADIR%%/workflow_samples/users/Get the second half of sequence.usa %%DATADIR%%/workflow_samples/users/LinkData Fetch.usa %%DATADIR%%/workflow_samples/users/QualityFilter.usa +%%DATADIR%%/workflow_samples/users/Read one sequence.usa
Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?201502241142.t1OBgsm9064485>