Date: Mon, 17 Feb 2003 09:22:24 +1100 (EST) From: Maurice Castro <maurice@dante.serc.rmit.edu.au> To: FreeBSD-gnats-submit@FreeBSD.org Subject: ports/48344: Update of R Message-ID: <200302162222.h1GMMOr55202@dante.serc.rmit.edu.au>
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>Number: 48344 >Category: ports >Synopsis: Update of R >Confidential: no >Severity: non-critical >Priority: medium >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: maintainer-update >Submitter-Id: current-users >Arrival-Date: Sun Feb 16 14:40:05 PST 2003 >Closed-Date: >Last-Modified: >Originator: Maurice Castro >Release: FreeBSD 4.4-RELEASE i386 >Organization: Software Engineering Research Centre >Environment: System: FreeBSD dante.serc.rmit.edu.au 4.4-RELEASE FreeBSD 4.4-RELEASE #0: Tue Sep 18 11:57:08 PDT 2001 murray@builder.FreeBSD.org:/usr/src/sys/compile/GENERIC i386 All >Description: Patch for R to bring up to current version Kudos to Eric van Gyzen for the patch >How-To-Repeat: Diff file attached in fix >Fix: Index: Makefile =================================================================== RCS file: /build/cvsroot/ports/math/R-letter/Makefile,v retrieving revision 1.25 diff -u -r1.25 Makefile --- Makefile 8 Jan 2003 14:51:44 -0000 1.25 +++ Makefile 31 Jan 2003 20:17:41 -0000 @@ -6,22 +6,20 @@ # PORTNAME= R -PORTVERSION= 1.6.1 +PORTVERSION= 1.6.2 CATEGORIES= math MASTER_SITES= http://cran.r-project.org/src/base/ \ ftp://cran.r-project.org/pub/R/src/base/ \ http://cran.at.r-project.org/src/base/ \ + http://cran.au.r-project.org/src/base/ \ http://cran.ch.r-project.org/src/base/ \ http://cran.dk.r-project.org/src/base/ \ http://cran.hu.r-project.org/src/base/ \ http://cran.uk.r-project.org/src/base/ \ http://cran.us.r-project.org/src/base/ \ - http://mirror.aarnet.edu.au/CRAN/src/base/ \ ftp://ftp.u-aizu.ac.jp/pub/lang/R/CRAN/src/base/ \ - ftp://dola.snu.ac.kr/pub/R/CRAN/src/base/ \ http://lib.stat.cmu.edu/R/CRAN/src/base/ PKGNAMESUFFIX= -${PAPERSIZE} -DISTNAME= R-${PORTVERSION} EXTRACT_SUFX= .tgz MAINTAINER= maurice@serc.rmit.edu.au @@ -42,11 +40,11 @@ @${FALSE} .endif -#ALL_TARGET= all help html - MAN1= R.1 -test: - @(cd ${WRKSRC}; make test-All) +test check: build + @(cd ${WRKSRC}; make check) +fullcheck: build + @(cd ${WRKSRC}; make fullcheck) .include <bsd.port.mk> Index: distinfo =================================================================== RCS file: /build/cvsroot/ports/math/R-letter/distinfo,v retrieving revision 1.12 diff -u -r1.12 distinfo --- distinfo 8 Jan 2003 14:51:44 -0000 1.12 +++ distinfo 31 Jan 2003 19:27:47 -0000 @@ -1 +1 @@ -MD5 (R-1.6.1.tgz) = 7c9b8e8582812448aedd0322bcc135eb +MD5 (R-1.6.2.tgz) = 174e6280aa2f2102388ca9c7930b1843 Index: pkg-comment =================================================================== RCS file: /build/cvsroot/ports/math/R-letter/pkg-comment,v retrieving revision 1.2 diff -u -r1.2 pkg-comment --- pkg-comment 11 Oct 1999 23:28:26 -0000 1.2 +++ pkg-comment 31 Jan 2003 19:27:24 -0000 @@ -1 +1 @@ -Statistical analysis language similar to AT&T's S language +a language for statistical computing and graphics Index: pkg-descr =================================================================== RCS file: /build/cvsroot/ports/math/R-letter/pkg-descr,v retrieving revision 1.3 diff -u -r1.3 pkg-descr --- pkg-descr 11 Oct 1999 23:35:37 -0000 1.3 +++ pkg-descr 31 Jan 2003 19:19:15 -0000 @@ -1,15 +1,20 @@ -R is a language which is not entirely unlike the S language developed -at AT&T Bell Laboratories by Rick Becker, John Chambers and Allan -Wilks. +R is a language and environment for statistical computing and graphics. +It is a GNU project which is similar to the S language and environment +which was developed at Bell Laboratories (formerly AT&T, now Lucent +Technologies) by John Chambers and colleagues. R can be considered as a +different implementation of S. There are some important differences, +but much code written for S runs unaltered under R. -R is free software distributed under a GNU-style copyleft. +R provides a wide variety of statistical (linear and nonlinear modelling, +classical statistical tests, time-series analysis, classification, +clustering, ...) and graphical techniques, and is highly extensible. +The S language is often the vehicle of choice for research in statistical +methodology, and R provides an Open Source route to participation in that +activity. -This port has most of the functionality in the first S book (the -"Blue Book") and many of the applications. In addition, a certain -amount of functionality from the second S book (the "White Book") -has been implemented. In particular functioning versions of "lm" -and "glm" and their associated "summary" and "anova" methods are -provided. +One of R's strengths is the ease with which well-designed publication-quality +plots can be produced, including mathematical symbols and formulae where +needed. Great care has been taken over the defaults for the minor design +choices in graphics, but the user retains full control. -WWW: http://stat.auckland.ac.nz/r/r.html - http://stat.ethz.ch/R/manual/ +WWW: http://www.R-project.org/ Index: pkg-plist =================================================================== RCS file: /build/cvsroot/ports/math/R-letter/pkg-plist,v retrieving revision 1.15 diff -u -r1.15 pkg-plist --- pkg-plist 8 Jan 2003 14:51:44 -0000 1.15 +++ pkg-plist 31 Jan 2003 20:20:51 -0000 @@ -1177,6 +1177,7 @@ lib/R/library/base/R-ex/image.R lib/R/library/base/R-ex/infert.R lib/R/library/base/R-ex/influence.measures.R +lib/R/library/base/R-ex/integer.R lib/R/library/base/R-ex/integrate.R lib/R/library/base/R-ex/interaction.R lib/R/library/base/R-ex/interaction.plot.R @@ -3558,12 +3559,10 @@ lib/R/library/boot/data/calcium.rda lib/R/library/boot/data/cane.rda lib/R/library/boot/data/capability.rda -lib/R/library/boot/data/cats.rda lib/R/library/boot/data/catsM.rda lib/R/library/boot/data/cav.rda lib/R/library/boot/data/cd4.nested.rda lib/R/library/boot/data/cd4.rda -lib/R/library/boot/data/cement.rda lib/R/library/boot/data/channing.rda lib/R/library/boot/data/city.rda lib/R/library/boot/data/claridge.rda @@ -3580,10 +3579,7 @@ lib/R/library/boot/data/gravity.rda lib/R/library/boot/data/hirose.rda lib/R/library/boot/data/islay.rda -lib/R/library/boot/data/leuk.rda -lib/R/library/boot/data/mammals.rda lib/R/library/boot/data/manaus.rda -lib/R/library/boot/data/mcycle.rda lib/R/library/boot/data/melanoma.rda lib/R/library/boot/data/motor.rda lib/R/library/boot/data/neuro.rda @@ -3591,11 +3587,9 @@ lib/R/library/boot/data/nodal.rda lib/R/library/boot/data/nuclear.rda lib/R/library/boot/data/paulsen.rda -lib/R/library/boot/data/phones.rda lib/R/library/boot/data/poisons.rda lib/R/library/boot/data/polar.rda lib/R/library/boot/data/remission.rda -lib/R/library/boot/data/rock.rda lib/R/library/boot/data/salinity.rda lib/R/library/boot/data/survival.rda lib/R/library/boot/data/tau.rda @@ -3627,11 +3621,10 @@ lib/R/library/boot/help/calcium lib/R/library/boot/help/cane lib/R/library/boot/help/capability -lib/R/library/boot/help/cats +lib/R/library/boot/help/catsM lib/R/library/boot/help/cav lib/R/library/boot/help/cd4 lib/R/library/boot/help/cd4.nested -lib/R/library/boot/help/cement lib/R/library/boot/help/censboot lib/R/library/boot/help/censboot-internal lib/R/library/boot/help/channing @@ -3665,14 +3658,11 @@ lib/R/library/boot/help/islay lib/R/library/boot/help/jack.after.boot lib/R/library/boot/help/k3.linear -lib/R/library/boot/help/leuk lib/R/library/boot/help/linear.approx lib/R/library/boot/help/lines.saddle.distn lib/R/library/boot/help/logit lib/R/library/boot/help/lynx -lib/R/library/boot/help/mammals lib/R/library/boot/help/manaus -lib/R/library/boot/help/mcycle lib/R/library/boot/help/melanoma lib/R/library/boot/help/motor lib/R/library/boot/help/neuro @@ -3682,7 +3672,6 @@ lib/R/library/boot/help/normalize lib/R/library/boot/help/nuclear lib/R/library/boot/help/paulsen -lib/R/library/boot/help/phones lib/R/library/boot/help/plot.boot lib/R/library/boot/help/poisons lib/R/library/boot/help/polar @@ -3691,7 +3680,6 @@ lib/R/library/boot/help/print.saddle.distn lib/R/library/boot/help/print.simplex lib/R/library/boot/help/remission -lib/R/library/boot/help/rock lib/R/library/boot/help/saddle lib/R/library/boot/help/saddle.distn lib/R/library/boot/help/saddle.distn.object @@ -3734,11 +3722,10 @@ lib/R/library/boot/html/calcium.html lib/R/library/boot/html/cane.html lib/R/library/boot/html/capability.html -lib/R/library/boot/html/cats.html +lib/R/library/boot/html/catsM.html lib/R/library/boot/html/cav.html lib/R/library/boot/html/cd4.html lib/R/library/boot/html/cd4.nested.html -lib/R/library/boot/html/cement.html lib/R/library/boot/html/censboot-internal.html lib/R/library/boot/html/censboot.html lib/R/library/boot/html/channing.html @@ -3772,14 +3759,11 @@ lib/R/library/boot/html/islay.html lib/R/library/boot/html/jack.after.boot.html lib/R/library/boot/html/k3.linear.html -lib/R/library/boot/html/leuk.html lib/R/library/boot/html/linear.approx.html lib/R/library/boot/html/lines.saddle.distn.html lib/R/library/boot/html/logit.html lib/R/library/boot/html/lynx.html -lib/R/library/boot/html/mammals.html lib/R/library/boot/html/manaus.html -lib/R/library/boot/html/mcycle.html lib/R/library/boot/html/melanoma.html lib/R/library/boot/html/motor.html lib/R/library/boot/html/neuro.html @@ -3789,7 +3773,6 @@ lib/R/library/boot/html/normalize.html lib/R/library/boot/html/nuclear.html lib/R/library/boot/html/paulsen.html -lib/R/library/boot/html/phones.html lib/R/library/boot/html/plot.boot.html lib/R/library/boot/html/poisons.html lib/R/library/boot/html/polar.html @@ -3798,7 +3781,6 @@ lib/R/library/boot/html/print.saddle.distn.html lib/R/library/boot/html/print.simplex.html lib/R/library/boot/html/remission.html -lib/R/library/boot/html/rock.html lib/R/library/boot/html/saddle.distn.html lib/R/library/boot/html/saddle.distn.object.html lib/R/library/boot/html/saddle.html @@ -3840,11 +3822,10 @@ lib/R/library/boot/latex/calcium.tex lib/R/library/boot/latex/cane.tex lib/R/library/boot/latex/capability.tex -lib/R/library/boot/latex/cats.tex +lib/R/library/boot/latex/catsM.tex lib/R/library/boot/latex/cav.tex lib/R/library/boot/latex/cd4.nested.tex lib/R/library/boot/latex/cd4.tex -lib/R/library/boot/latex/cement.tex lib/R/library/boot/latex/censboot-internal.tex lib/R/library/boot/latex/censboot.tex lib/R/library/boot/latex/channing.tex @@ -3878,14 +3859,11 @@ lib/R/library/boot/latex/islay.tex lib/R/library/boot/latex/jack.after.boot.tex lib/R/library/boot/latex/k3.linear.tex -lib/R/library/boot/latex/leuk.tex lib/R/library/boot/latex/linear.approx.tex lib/R/library/boot/latex/lines.saddle.distn.tex lib/R/library/boot/latex/logit.tex lib/R/library/boot/latex/lynx.tex -lib/R/library/boot/latex/mammals.tex lib/R/library/boot/latex/manaus.tex -lib/R/library/boot/latex/mcycle.tex lib/R/library/boot/latex/melanoma.tex lib/R/library/boot/latex/motor.tex lib/R/library/boot/latex/neuro.tex @@ -3895,7 +3873,6 @@ lib/R/library/boot/latex/normalize.tex lib/R/library/boot/latex/nuclear.tex lib/R/library/boot/latex/paulsen.tex -lib/R/library/boot/latex/phones.tex lib/R/library/boot/latex/plot.boot.tex lib/R/library/boot/latex/poisons.tex lib/R/library/boot/latex/polar.tex @@ -3904,7 +3881,6 @@ lib/R/library/boot/latex/print.saddle.distn.tex lib/R/library/boot/latex/print.simplex.tex lib/R/library/boot/latex/remission.tex -lib/R/library/boot/latex/rock.tex lib/R/library/boot/latex/saddle.distn.object.tex lib/R/library/boot/latex/saddle.distn.tex lib/R/library/boot/latex/saddle.tex @@ -4007,6 +3983,7 @@ lib/R/library/cluster/R-ex/lower.to.upper.tri.inds.R lib/R/library/cluster/R-ex/mona.R lib/R/library/cluster/R-ex/pam.R +lib/R/library/cluster/R-ex/plot.agnes.R lib/R/library/cluster/R-ex/plot.diana.R lib/R/library/cluster/R-ex/plot.partition.R lib/R/library/cluster/R-ex/pluton.R @@ -4424,8 +4401,8 @@ lib/R/library/grid/R-ex/viewport.R lib/R/library/grid/R/grid lib/R/library/grid/TITLE -lib/R/library/grid/doc/changes_0.7-1.txt -lib/R/library/grid/doc/uguide_0.7-1.pdf +lib/R/library/grid/doc/changes_0.7-4.txt +lib/R/library/grid/doc/uguide_0.7-4.pdf lib/R/library/grid/help/AnIndex lib/R/library/grid/help/Grid lib/R/library/grid/help/absolute.size @@ -4754,6 +4731,7 @@ lib/R/library/methods/CONTENTS lib/R/library/methods/DESCRIPTION lib/R/library/methods/INDEX +lib/R/library/methods/R-ex/GenericFunctions.R lib/R/library/methods/R-ex/NextMethod.R lib/R/library/methods/R-ex/as.R lib/R/library/methods/R-ex/classRepresentation-class.R @@ -7573,6 +7551,7 @@ lib/R/library/ts/help/sunspot lib/R/library/ts/help/toeplitz lib/R/library/ts/help/treering +lib/R/library/ts/help/ts-defunct lib/R/library/ts/help/ts.plot lib/R/library/ts/help/ts.union lib/R/library/ts/help/tsSmooth @@ -7633,6 +7612,7 @@ lib/R/library/ts/html/sunspot.html lib/R/library/ts/html/toeplitz.html lib/R/library/ts/html/treering.html +lib/R/library/ts/html/ts-defunct.html lib/R/library/ts/html/ts.plot.html lib/R/library/ts/html/ts.union.html lib/R/library/ts/html/tsSmooth.html @@ -7692,6 +7672,7 @@ lib/R/library/ts/latex/sunspot.tex lib/R/library/ts/latex/toeplitz.tex lib/R/library/ts/latex/treering.tex +lib/R/library/ts/latex/ts-defunct.tex lib/R/library/ts/latex/ts.plot.tex lib/R/library/ts/latex/ts.union.tex lib/R/library/ts/latex/tsSmooth.tex >Release-Note: >Audit-Trail: >Unformatted: To Unsubscribe: send mail to majordomo@FreeBSD.org with "unsubscribe freebsd-ports-bugs" in the body of the message
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