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Date:      Fri, 29 Jul 2016 16:12:36 +0000
From:      bugzilla-noreply@freebsd.org
To:        freebsd-ports-bugs@FreeBSD.org
Subject:   [Bug 210168] [patch] math/gsl: update to 2.1
Message-ID:  <bug-210168-13-6zM71AIOWV@https.bugs.freebsd.org/bugzilla/>
In-Reply-To: <bug-210168-13@https.bugs.freebsd.org/bugzilla/>
References:  <bug-210168-13@https.bugs.freebsd.org/bugzilla/>

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https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D210168

Rainer Hurling <rhurlin@gwdg.de> changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
                 CC|                            |rhurlin@gwdg.de

--- Comment #4 from Rainer Hurling <rhurlin@gwdg.de> ---
Created attachment 173099
  --> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=3D173099&action=
=3Dedit
patch to update math/gsl, rev. 2

I tried your patch with some minor modifications on 12-CURRENT amd64 and it
builds and installs fine. 'portlint -AC' also is fine.

(The changes in the newer patch, rev. 2, against the older one are an obsol=
ete
patch under files, a style problem with COMMENT and a bit better sorting in
pkg-plist.)


Next, I tried 44 known dependencies with GSL 2.1 on Poudriere and only 8
stopped with errors [EE]. A append a list with all ports. They are marked [=
OK],
if they build, ohterwise [EE], if errors occurred. The reasons for not buil=
ding
are from Poudriere log files:

[OK]    audio/snd
[OK]    benchmarks/flowgrind
[OK]    benchmarks/sipp
[OK]    biology/bcftools
[OK]    comms/gnuradio
[OK]    editors/calligra
[EE]!!! graphics/amide
tb_profile.c:671:33: error: no member named 'J' in 'gsl_multifit_fdfsolver'
    gsl_multifit_covar (solver->J, 0.0, covar);

[OK]    graphics/enblend
[OK]    graphics/inkscape
[EE]!!! science/kst2            no newer version, no deps
src/plugins/fits/lorentzian_unweighted/../non_linear.h:180:40: error:=20
      no member named 'J' in 'gsl_multifit_fdfsolver'
          gsl_multifit_covar( pSolver->J, 0.0, pMatrixCovariance );

[OK]    graphics/luminance
[OK]    graphics/luminance-qt5
[OK]    graphics/nip2
[OK]    graphics/ocropus
[OK]    graphics/pfstmo
[OK]    graphics/qgis
[OK]    graphics/xaos
[OK]    lang/algol68g
[OK]    lang/newlisp
[OK]    lang/newlisp-devel
[OK]    mail/bogofilter
[OK]    math/asymptote
[OK]    math/dieharder
[OK]    math/fflas-ffpack
[OK]    math/giacxcas
[OK]    math/labplot
[OK]    math/libflame
[OK]    math/libproj4
[EE]!!! math/ocamlgsl           NEW RELEASE 1.19.1
[OK]    math/octave-forge-gsl
[EE]!!! math/orpie              deps on math/ocamgsl
[EE]!!! math/p5-Math-GSL
xs/BSpline_wrap.1.16.c:3277:62: error: too many arguments to function call,
expected 4, have 5
    result =3D (int)gsl_bspline_deriv_eval(arg1,arg2,arg3,arg4,arg5);

[OK]    math/PDL
[OK]    math/pspp
[EE]!!! math/py-gsl             NEW RELEASE 2.2.0
[EE]!!! math/qtiplot            no newer version, no deps
src/analysis/Fit.cpp:131:29: error: no member named 'J' in
'gsl_multifit_fdfsolver'
            gsl_multifit_covar (s->J, 0.0, covar);

[EE]!!! math/rubygem-rb-gsl     no newer version, no deps
histogram.c:1245:25: error: no member named 'J' in 'gsl_multifit_fdfsolver'
  gsl_multifit_covar(s->J, 0.0, covar);

[OK]    net/ns3
[OK]    science/afni
[OK]    science/fisicalab
[OK]    science/getdp
[OK]    science/gnudatalanguage
[OK]    science/py-mlpy
[OK]    science/step


So it seems, that math/ocamlgsl and math/py-gsl should be updated. For five=
 of
the other failing ports we need patches, only math/orpie should build, after
the update of math/ocamgsl.

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