Date: Sun, 21 Mar 2021 15:10:17 +0000 (UTC) From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r568921 - in head/biology: . biolibc Message-ID: <202103211510.12LFAHIE030690@repo.freebsd.org>
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Author: jwb Date: Sun Mar 21 15:10:17 2021 New Revision: 568921 URL: https://svnweb.freebsd.org/changeset/ports/568921 Log: biology/biolibc: Low-level high-performance bioinformatics library Biolibc is a library of fast, memory-efficient, low-level functions for processing biological data. Like libc, it consists of numerous disparate, general-purpose functions which could be used by a wide variety of applications. These include functions for streaming common file formats such as SAM and VCF, string functions specific to bioinformatics, etc. Added: head/biology/biolibc/ head/biology/biolibc/Makefile (contents, props changed) head/biology/biolibc/distinfo (contents, props changed) head/biology/biolibc/pkg-descr (contents, props changed) head/biology/biolibc/pkg-plist (contents, props changed) Modified: head/biology/Makefile Modified: head/biology/Makefile ============================================================================== --- head/biology/Makefile Sun Mar 21 14:23:31 2021 (r568920) +++ head/biology/Makefile Sun Mar 21 15:10:17 2021 (r568921) @@ -12,6 +12,7 @@ SUBDIR += bedtools SUBDIR += bioawk SUBDIR += biococoa + SUBDIR += biolibc SUBDIR += bioparser SUBDIR += biosoup SUBDIR += bolt-lmm Added: head/biology/biolibc/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/biolibc/Makefile Sun Mar 21 15:10:17 2021 (r568921) @@ -0,0 +1,16 @@ +# $FreeBSD$ + +PORTNAME= biolibc +DISTVERSION= 0.1.1 +CATEGORIES= biology + +MAINTAINER= jwb@FreeBSD.org +COMMENT= Low-level high-performance bioinformatics library + +LICENSE= BSD2CLAUSE +LICENSE_FILE= ${WRKSRC}/LICENSE + +USE_GITHUB= yes +GH_ACCOUNT= auerlab + +.include <bsd.port.mk> Added: head/biology/biolibc/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/biolibc/distinfo Sun Mar 21 15:10:17 2021 (r568921) @@ -0,0 +1,3 @@ +TIMESTAMP = 1616330997 +SHA256 (auerlab-biolibc-0.1.1_GH0.tar.gz) = 0b4a5a63a17998423a583e05e6244369b0c7195c09d2c1c25f1bcde45d7d6388 +SIZE (auerlab-biolibc-0.1.1_GH0.tar.gz) = 11770 Added: head/biology/biolibc/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/biolibc/pkg-descr Sun Mar 21 15:10:17 2021 (r568921) @@ -0,0 +1,7 @@ +Biolibc is a library of fast, memory-efficient, low-level functions for +processing biological data. Like libc, it consists of numerous disparate, +general-purpose functions which could be used by a wide variety of +applications. These include functions for streaming common file formats such +as SAM and VCF, string functions specific to bioinformatics, etc. + +WWW: https://github.com/auerlab/vcfio Added: head/biology/biolibc/pkg-plist ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/biolibc/pkg-plist Sun Mar 21 15:10:17 2021 (r568921) @@ -0,0 +1,6 @@ +include/biostring.h +include/dsvio.h +include/samio.h +include/vcfio.h +lib/libbiolibc.a +man/man1/biolibc.1.gz
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