Date: Thu, 12 Jan 2017 19:01:53 +0000 From: bugzilla-noreply@freebsd.org To: freebsd-ports-bugs@FreeBSD.org Subject: [Bug 216004] biology/ncbi-blast+: package requires libgomp Message-ID: <bug-216004-13@https.bugs.freebsd.org/bugzilla/>
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https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D216004 Bug ID: 216004 Summary: biology/ncbi-blast+: package requires libgomp Product: Ports & Packages Version: Latest Hardware: Any OS: Any Status: New Severity: Affects Some People Priority: --- Component: Individual Port(s) Assignee: freebsd-ports-bugs@FreeBSD.org Reporter: weeks@iastate.edu It appears that the amd64 ncbi-blast+-2.5.0 package was compiled with gcc >= =3D 5.0, as it requires a libgomp supporting OpenMP 4.0; however, this is not reflected in the dependencies: $ pkg which /usr/local/bin/blastn /usr/local/bin/blastn was installed by package ncbi-blast+-2.5.0 $ pkg info -d ncbi-blast+=20=20=20=20=20=20=20=20 ncbi-blast+-2.5.0: python27-2.7.13_1 pcre-8.39_1 p5-List-MoreUtils-0.416 perl5-5.24.1.r4_1 gcc-4.9.4 $ blastn -version /usr/lib/libgomp.so.1: version GOMP_4.0 required by /usr/local/bin/blastn n= ot found weeks@cicer:ncbi-blast+$ LD_LIBRARY_PATH=3D/usr/local/lib/gcc49 blastn -ver= sion /usr/lib/libgomp.so.1: version GOMP_4.0 required by /usr/local/bin/blastn n= ot found $ LD_LIBRARY_PATH=3D/usr/local/lib/gcc50 blastn -version /usr/lib/libgomp.so.1: version GOMP_4.0 required by /usr/local/bin/blastn n= ot found --=20 You are receiving this mail because: You are the assignee for the bug.=
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