Date: Fri, 30 Nov 2007 18:17:24 GMT From: Vittorio De Martino <vdemart1@tin.it> To: freebsd-gnats-submit@FreeBSD.org Subject: ports/118358: R update from 2.6.0 to 2.6.1 version Message-ID: <200711301817.lAUIHOLo008092@www.freebsd.org> Resent-Message-ID: <200711301820.lAUIK18f065340@freefall.freebsd.org>
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>Number: 118358 >Category: ports >Synopsis: R update from 2.6.0 to 2.6.1 version >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Fri Nov 30 18:20:01 UTC 2007 >Closed-Date: >Last-Modified: >Originator: Vittorio De Martino >Release: 6.2 >Organization: >Environment: FreeBSD hpbsd.vic 6.2-RELEASE-p7 FreeBSD 6.2-RELEASE-p7 #2: Tue Sep 4 15:48:37 UTC 2007 victor@hpbsd.vic:/usr/obj/usr/src/sys/HP02 i386 >Description: I'm proposing a diff file to update R from 2.6.0 to 2.6.1 >How-To-Repeat: >Fix: Patch attached with submission follows: diff -ruN R-2.6.0/Makefile R/Makefile --- R-2.6.0/Makefile Sat Oct 27 15:11:19 2007 +++ R/Makefile Fri Nov 30 17:24:31 2007 @@ -7,7 +7,7 @@ # PORTNAME= R -PORTVERSION= 2.6.0 +PORTVERSION= 2.6.1 CATEGORIES= math lang MASTER_SITES= http://cran.r-project.org/src/base/R-2/ \ ftp://cran.r-project.org/pub/R/src/base/R-2/ \ diff -ruN R-2.6.0/distinfo R/distinfo --- R-2.6.0/distinfo Sat Oct 27 15:11:19 2007 +++ R/distinfo Fri Nov 30 17:25:20 2007 @@ -1,3 +1,3 @@ -MD5 (R-2.6.0.tar.gz) = 97e5d2542349925962b7469456d45731 -SHA256 (R-2.6.0.tar.gz) = 8a916e653affa83584119dc08a8b12e30e430dee19a398513515003c43d791da -SIZE (R-2.6.0.tar.gz) = 15447985 +MD5 (R-2.6.1.tar.gz) = 19c35a69e1afa73f5f70f91ff9939233 +SHA256 (R-2.6.1.tar.gz) = 8fe505cbd9562cc84422475bc5c0b8e1b88b14d0c9e11d0de4f9e83ae8ce2563 +SIZE (R-2.6.1.tar.gz) = 15519691 diff -ruN R-2.6.0/pkg-plist R/pkg-plist --- R-2.6.0/pkg-plist Sat Oct 27 15:11:20 2007 +++ R/pkg-plist Fri Nov 30 19:03:10 2007 @@ -76,7 +76,7 @@ lib/R/include/Rversion.h lib/R/include/S.h lib/R/lib/libR.so -%%BLAS%%lib/R/lib/libRlapack.so +lib/R/lib/libRlapack.so lib/R/library/KernSmooth/CONTENTS lib/R/library/KernSmooth/DESCRIPTION lib/R/library/KernSmooth/INDEX @@ -2527,6 +2527,7 @@ lib/R/library/boot/man/boot.Rd.gz lib/R/library/boot/po/en@quot/LC_MESSAGES/R-boot.mo lib/R/library/boot/po/fr/LC_MESSAGES/R-boot.mo +lib/R/library/boot/po/ru/LC_MESSAGES/R-boot.mo lib/R/library/class/CITATION lib/R/library/class/CONTENTS lib/R/library/class/DESCRIPTION @@ -2553,6 +2554,8 @@ lib/R/library/class/R-ex/olvq1.R lib/R/library/class/R-ex/reduce.nn.R lib/R/library/class/R/class +lib/R/library/class/R/class.rdb +lib/R/library/class/R/class.rdx lib/R/library/class/help/AnIndex lib/R/library/class/help/SOM lib/R/library/class/help/batchSOM @@ -2827,7 +2830,6 @@ lib/R/library/codetools/Meta/package.rds lib/R/library/codetools/NAMESPACE lib/R/library/codetools/R-ex/checkUsage.R -lib/R/library/codetools/R-ex/codetools.R lib/R/library/codetools/R-ex/findGlobals.R lib/R/library/codetools/R-ex/showTree.R lib/R/library/codetools/R/codetools @@ -3596,6 +3598,7 @@ lib/R/library/grDevices/latex/xyz.coords.tex lib/R/library/grDevices/libs/grDevices.so lib/R/library/grDevices/man/grDevices.Rd.gz +lib/R/library/grDevices/po/de/LC_MESSAGES/R-grDevices.mo lib/R/library/grDevices/po/en@quot/LC_MESSAGES/R-grDevices.mo lib/R/library/grDevices/po/en@quot/LC_MESSAGES/grDevices.mo lib/R/library/grDevices/po/en_GB/LC_MESSAGES/R-grDevices.mo @@ -3888,6 +3891,7 @@ lib/R/library/graphics/latex/xspline.tex lib/R/library/graphics/latex/zAxis.tex lib/R/library/graphics/man/graphics.Rd.gz +lib/R/library/graphics/po/de/LC_MESSAGES/R-graphics.mo lib/R/library/graphics/po/en@quot/LC_MESSAGES/R-graphics.mo lib/R/library/graphics/po/fr/LC_MESSAGES/R-graphics.mo lib/R/library/graphics/po/it/LC_MESSAGES/R-graphics.mo @@ -4196,6 +4200,7 @@ lib/R/library/grid/latex/xDetails.tex lib/R/library/grid/libs/grid.so lib/R/library/grid/man/grid.Rd.gz +lib/R/library/grid/po/de/LC_MESSAGES/R-grid.mo lib/R/library/grid/po/en@quot/LC_MESSAGES/R-grid.mo lib/R/library/grid/po/en@quot/LC_MESSAGES/grid.mo lib/R/library/grid/po/fr/LC_MESSAGES/R-grid.mo @@ -4246,6 +4251,7 @@ lib/R/library/lattice/R-ex/qqmath.R lib/R/library/lattice/R-ex/rfs.R lib/R/library/lattice/R-ex/shingles.R +lib/R/library/lattice/R-ex/simpleTheme.R lib/R/library/lattice/R-ex/singer.R lib/R/library/lattice/R-ex/splom.R lib/R/library/lattice/R-ex/strip.default.R @@ -4312,6 +4318,7 @@ lib/R/library/lattice/help/rfs lib/R/library/lattice/help/shingles lib/R/library/lattice/help/simpleKey +lib/R/library/lattice/help/simpleTheme lib/R/library/lattice/help/singer lib/R/library/lattice/help/splom lib/R/library/lattice/help/strip.default @@ -4372,6 +4379,7 @@ lib/R/library/lattice/html/rfs.html lib/R/library/lattice/html/shingles.html lib/R/library/lattice/html/simpleKey.html +lib/R/library/lattice/html/simpleTheme.html lib/R/library/lattice/html/singer.html lib/R/library/lattice/html/splom.html lib/R/library/lattice/html/strip.default.html @@ -4431,6 +4439,7 @@ lib/R/library/lattice/latex/rfs.tex lib/R/library/lattice/latex/shingles.tex lib/R/library/lattice/latex/simpleKey.tex +lib/R/library/lattice/latex/simpleTheme.tex lib/R/library/lattice/latex/singer.tex lib/R/library/lattice/latex/splom.tex lib/R/library/lattice/latex/strip.default.tex @@ -5100,7 +5109,6 @@ lib/R/library/nlme/R-ex/pdMatrix.reStruct.R lib/R/library/nlme/R-ex/pdNatural.R lib/R/library/nlme/R-ex/pdSymm.R -lib/R/library/nlme/R-ex/phenoModel.R lib/R/library/nlme/R-ex/plot.ACF.R lib/R/library/nlme/R-ex/plot.Variogram.R lib/R/library/nlme/R-ex/plot.augPred.R @@ -5124,7 +5132,6 @@ lib/R/library/nlme/R-ex/print.varFunc.R lib/R/library/nlme/R-ex/qqnorm.gls.R lib/R/library/nlme/R-ex/qqnorm.lme.R -lib/R/library/nlme/R-ex/quinModel.R lib/R/library/nlme/R-ex/random.effects.R lib/R/library/nlme/R-ex/ranef.lmList.R lib/R/library/nlme/R-ex/ranef.lme.R @@ -6252,6 +6259,8 @@ lib/R/library/spatial/R-ex/trmat.R lib/R/library/spatial/R-ex/variogram.R lib/R/library/spatial/R/spatial +lib/R/library/spatial/R/spatial.rdb +lib/R/library/spatial/R/spatial.rdx lib/R/library/spatial/help/AnIndex lib/R/library/spatial/help/Kaver lib/R/library/spatial/help/Kenvl @@ -7769,7 +7778,6 @@ lib/R/library/survival/R-ex/survfit.R lib/R/library/survival/R-ex/survobrien.R lib/R/library/survival/R-ex/survreg.R -lib/R/library/survival/R-ex/survreg.control.R lib/R/library/survival/R-ex/survreg.distributions.R lib/R/library/survival/R-ex/survreg.old.R lib/R/library/survival/R-ex/tcut.R @@ -7978,17 +7986,17 @@ lib/R/library/tcltk/Meta/Rd.rds lib/R/library/tcltk/Meta/demo.rds lib/R/library/tcltk/Meta/hsearch.rds -%%TCLTK%%lib/R/library/tcltk/Meta/nsInfo.rds +lib/R/library/tcltk/Meta/nsInfo.rds lib/R/library/tcltk/Meta/package.rds -%%TCLTK%%lib/R/library/tcltk/NAMESPACE +lib/R/library/tcltk/NAMESPACE lib/R/library/tcltk/R-ex/TclInterface.R lib/R/library/tcltk/R-ex/TkCommands.R lib/R/library/tcltk/R-ex/TkWidgetcmds.R lib/R/library/tcltk/R-ex/TkWidgets.R lib/R/library/tcltk/R-ex/tclServiceMode.R lib/R/library/tcltk/R/tcltk -%%TCLTK%%lib/R/library/tcltk/R/tcltk.rdb -%%TCLTK%%lib/R/library/tcltk/R/tcltk.rdx +lib/R/library/tcltk/R/tcltk.rdb +lib/R/library/tcltk/R/tcltk.rdx lib/R/library/tcltk/demo/tkcanvas.R lib/R/library/tcltk/demo/tkdensity.R lib/R/library/tcltk/demo/tkfaq.R @@ -8036,7 +8044,7 @@ lib/R/library/tcltk/latex/tkStartGUI.tex lib/R/library/tcltk/latex/tk_select.list.tex lib/R/library/tcltk/latex/tkpager.tex -%%TCLTK%%lib/R/library/tcltk/libs/tcltk.so +lib/R/library/tcltk/libs/tcltk.so lib/R/library/tcltk/man/tcltk.Rd.gz lib/R/library/tcltk/po/en@quot/LC_MESSAGES/R-tcltk.mo lib/R/library/tcltk/po/en@quot/LC_MESSAGES/tcltk.mo @@ -8584,7 +8592,7 @@ lib/R/library/utils/po/ko/LC_MESSAGES/R-utils.mo lib/R/library/utils/po/ru/LC_MESSAGES/R-utils.mo lib/R/library/utils/po/zh_CN/LC_MESSAGES/R-utils.mo -%%X11%%lib/R/modules/R_X11.so +lib/R/modules/R_X11.so lib/R/modules/internet.so lib/R/modules/lapack.so lib/R/modules/vfonts.so @@ -8602,6 +8610,7 @@ lib/R/share/licenses/LGPL-2 lib/R/share/licenses/LGPL-2.1 lib/R/share/licenses/LGPL-3 +lib/R/share/licenses/license.db lib/R/share/locale/de/LC_MESSAGES/R.mo lib/R/share/locale/en/LC_MESSAGES/R.mo lib/R/share/locale/en@quot/LC_MESSAGES/R.mo @@ -8648,6 +8657,8 @@ lib/libR.so lib/libR.so.0 libdata/pkgconfig/libR.pc +man/man1/R.1.gz +man/man1/Rscript.1.gz %%DOCSDIR%%/AUTHORS %%DOCSDIR%%/COPYING %%DOCSDIR%%/COPYING.LIB @@ -8683,40 +8694,40 @@ %%DOCSDIR%%/html/search/index.txt %%DOCSDIR%%/html/thanks.html %%DOCSDIR%%/html/up.jpg -%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-FAQ.dvi +%%DOCSDIR%%/manual/R-FAQ.dvi %%DOCSDIR%%/manual/R-FAQ.html -%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-FAQ.pdf -%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-admin.dvi +%%DOCSDIR%%/manual/R-FAQ.pdf +%%DOCSDIR%%/manual/R-admin.dvi %%DOCSDIR%%/manual/R-admin.html -%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-admin.pdf -%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-data.dvi +%%DOCSDIR%%/manual/R-admin.pdf +%%DOCSDIR%%/manual/R-data.dvi %%DOCSDIR%%/manual/R-data.html -%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-data.pdf -%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-exts.dvi +%%DOCSDIR%%/manual/R-data.pdf +%%DOCSDIR%%/manual/R-exts.dvi %%DOCSDIR%%/manual/R-exts.html -%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-exts.pdf -%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-intro.dvi +%%DOCSDIR%%/manual/R-exts.pdf +%%DOCSDIR%%/manual/R-intro.dvi %%DOCSDIR%%/manual/R-intro.html -%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-intro.pdf -%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-ints.dvi +%%DOCSDIR%%/manual/R-intro.pdf +%%DOCSDIR%%/manual/R-ints.dvi %%DOCSDIR%%/manual/R-ints.html -%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-ints.pdf -%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-lang.dvi +%%DOCSDIR%%/manual/R-ints.pdf +%%DOCSDIR%%/manual/R-lang.dvi %%DOCSDIR%%/manual/R-lang.html -%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-lang.pdf -%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/QQ.eps -%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/ecdf.eps -%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/fig11.eps -%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/fig12.eps -%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/hist.eps -%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/ice.eps -%%DVI_MANUAL%%%%DOCSDIR%%/manual/refman.dvi -%%PDF_MANUAL%%%%DOCSDIR%%/manual/refman.pdf -%%DVI_MANUAL%%@dirrm %%DOCSDIR%%/manual/images -@dirrm %%DOCSDIR%%/manual -@dirrm %%DOCSDIR%%/html/search -@dirrm %%DOCSDIR%%/html -@dirrm %%DOCSDIR%% +%%DOCSDIR%%/manual/R-lang.pdf +%%DOCSDIR%%/manual/images/QQ.eps +%%DOCSDIR%%/manual/images/ecdf.eps +%%DOCSDIR%%/manual/images/fig11.eps +%%DOCSDIR%%/manual/images/fig12.eps +%%DOCSDIR%%/manual/images/hist.eps +%%DOCSDIR%%/manual/images/ice.eps +%%DOCSDIR%%/manual/refman.dvi +%%DOCSDIR%%/manual/refman.pdf +@dirrm share/doc/R/manual/images +@dirrm share/doc/R/manual +@dirrm share/doc/R/html/search +@dirrm share/doc/R/html +@dirrm share/doc/R @dirrm lib/R/share/texmf @dirrm lib/R/share/sh @dirrm lib/R/share/perl/Text @@ -8824,7 +8835,7 @@ @dirrm lib/R/library/tcltk/po/en@quot @dirrm lib/R/library/tcltk/po @dirrm lib/R/library/tcltk/man -%%TCLTK%%@dirrm lib/R/library/tcltk/libs +@dirrm lib/R/library/tcltk/libs @dirrm lib/R/library/tcltk/latex @dirrm lib/R/library/tcltk/html @dirrm lib/R/library/tcltk/help @@ -9050,6 +9061,8 @@ @dirrm lib/R/library/grid/po/fr @dirrm lib/R/library/grid/po/en@quot/LC_MESSAGES @dirrm lib/R/library/grid/po/en@quot +@dirrm lib/R/library/grid/po/de/LC_MESSAGES +@dirrm lib/R/library/grid/po/de @dirrm lib/R/library/grid/po @dirrm lib/R/library/grid/man @dirrm lib/R/library/grid/libs @@ -9075,6 +9088,8 @@ @dirrm lib/R/library/graphics/po/fr @dirrm lib/R/library/graphics/po/en@quot/LC_MESSAGES @dirrm lib/R/library/graphics/po/en@quot +@dirrm lib/R/library/graphics/po/de/LC_MESSAGES +@dirrm lib/R/library/graphics/po/de @dirrm lib/R/library/graphics/po @dirrm lib/R/library/graphics/man @dirrm lib/R/library/graphics/latex @@ -9101,6 +9116,8 @@ @dirrm lib/R/library/grDevices/po/en_GB @dirrm lib/R/library/grDevices/po/en@quot/LC_MESSAGES @dirrm lib/R/library/grDevices/po/en@quot +@dirrm lib/R/library/grDevices/po/de/LC_MESSAGES +@dirrm lib/R/library/grDevices/po/de @dirrm lib/R/library/grDevices/po @dirrm lib/R/library/grDevices/man @dirrm lib/R/library/grDevices/libs @@ -9169,6 +9186,8 @@ @dirrm lib/R/library/class/R @dirrm lib/R/library/class/Meta @dirrm lib/R/library/class +@dirrm lib/R/library/boot/po/ru/LC_MESSAGES +@dirrm lib/R/library/boot/po/ru @dirrm lib/R/library/boot/po/fr/LC_MESSAGES @dirrm lib/R/library/boot/po/fr @dirrm lib/R/library/boot/po/en@quot/LC_MESSAGES @@ -9244,4 +9263,3 @@ @dirrm lib/R/bin/exec @dirrm lib/R/bin @dirrm lib/R -@dirrmtry libdata/pkgconfig >Release-Note: >Audit-Trail: >Unformatted:
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