Date: Thu, 25 Jul 2013 07:27:16 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [RELEASE - head-default] Build failed for R-3.0.1 during build Message-ID: <201307250727.r6P7RGNc057497@beefy2.isc.freebsd.org>
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Maintainer: bf@FreeBSD.org Last committer: bf@FreeBSD.org Ident: $FreeBSD: head/math/R/Makefile 319316 2013-05-28 15:15:05Z bf $ Log URL: http://beefy2.isc.freebsd.org/bulk/head-default/2013-07-25_07h07m51s/logs/R-3.0.1.log Build URL: http://beefy2.isc.freebsd.org/bulk/head-default/2013-07-25_07h07m51s Log: ====>> Building math/R build started at Thu Jul 25 07:23:27 UTC 2013 port directory: /usr/ports/math/R building for: FreeBSD head-default-job-13 10.0-CURRENT FreeBSD 10.0-CURRENT amd64 maintained by: bf@FreeBSD.org Makefile ident: $FreeBSD: head/math/R/Makefile 319316 2013-05-28 15:15:05Z bf $ Poudriere version: 3.1-pre ---Begin Environment--- OSVERSION=1000035 UNAME_v=FreeBSD 10.0-CURRENT UNAME_r=10.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 MASTERMNT=/usr/local/poudriere/data/build/head-default/ref PKG_EXT=txz FORCE_PACKAGE=yes tpid=86208 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk NBPARALLEL=24 PKGNG=1 PKGNAME=R-3.0.1 PKG_DELETE=/usr/local/sbin/pkg delete -y -f PKG_ADD=/usr/local/sbin/pkg add PWD=/root/poudriere MASTERNAME=head-default USER=root HOME=/root POUDRIERE_VERSION=3.1-pre SKIPSANITY=0 LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for R-3.0.1: ATLAS=off: Use ATLAS instead of BLAS/LAPACK GHOSTSCRIPT=on: [dev2]bitmap() graphics devices ICU=on: Use ICU for collation in multibyte locales INFO_MANUALS=on: GNU info manuals JPEG=on: jpeg() graphics device LETTER_PAPER=off: US Letter paper LIBR=on: R shared library and a dynamically-linked R MISSING=off: use libmissing rather than libquadmath PANGOCAIRO=on: cairo and pango graphics support PCRE_PORT=on: Use devel/pcre instead of the bundled PCRE PDF_MANUALS=off: PDF manuals (requires TeX) PNG=on: png() graphics device TCLTK=on: tcltk package THREADS=on: Threading support TIFF=on: TIFF image format support X11=on: X11() graphics device ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --enable-memory-profiling rdocdir=/usr/local/share/doc/R --with-system-bzlib --with-system-zlib --with-blas="no" --with-lapack="no" --with-ICU --with-system-pcre --enable-threads=posix --with-jpeglib --enable-R-shlib --with-libpng --with-tcltk --with-tcl-config=/usr/local/lib/tcl8.6/tclConfig.sh --with-tk-config=/usr/local/lib/tk8.6/tkConfig.sh --with-libtiff --with-x --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- SED="/usr/local/bin/gsed" ac_cv_have_decl_powl=yes ac_cv_have_decl_log1pl=yes FCFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc46" INSTALL_DATA="install -o root -g wheel -m 644" R_LD_LIBRARY_PATH="/usr/local/lib/gcc46:/usr/local/lib" TAR="/usr/bin/tar" TMPDIR="/tmp" SHLIB_LDFLAGS="-fpic" SHLIB_CXXLDFLAGS="-fpic" TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh F77="gfortran46" FC="gfortran46" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc46" ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- TMPDIR="/tmp" TMPDIR="/tmp" SHELL=/bin/sh NO_LINT=YES F77="gfortran46" FC="gfortran46" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc46" ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="gcc46" CFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc46 -fno-strict-aliasing" CPP="cpp46" CPPFLAGS="-I/usr/local/include" LDFLAGS=" -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc46" CXX="g++46" CXXFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc46 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc46" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o roo t -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444" --End MAKE_ENV-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/R DOCSDIR=/usr/local/share/doc/R EXAMPLESDIR=/usr/local/share/examples/R WWWDIR=/usr/local/www/R ETCDIR=/usr/local/etc/R --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### WITH_PKGNG=yes NO_RESTRICTED=yes DISABLE_MAKE_JOBS=yes ---End make.conf--- ===> Cleaning for R-3.0.1 =======================<phase: check-config >============================ ========================================================================= =======================<phase: pkg-depends >============================ ===> R-3.0.1 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg ===> Installing existing package /packages/All/pkg-1.1.4_1.txz Installing pkg-1.1.4_1... done If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of R-3.0.1 ========================================================================= =======================<phase: fetch-depends >============================ ========================================================================= =======================<phase: fetch >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by R-3.0.1 for building ========================================================================= =======================<phase: checksum >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by R-3.0.1 for building => SHA256 Checksum OK for R-3.0.1.tar.gz. ========================================================================= =======================<phase: extract-depends>============================ ===> R-3.0.1 depends on file: /usr/local/bin/perl5.14.4 - not found ===> Verifying install for /usr/local/bin/perl5.14.4 in /usr/ports/lang/perl5.14 ===> Installing existing package /packages/All/perl-5.14.4.txz Installing perl-5.14.4...Removing stale symlinks from /usr/bin... Skipping /usr/bin/perl Skipping /usr/bin/perl5 Done. Creating various symlinks in /usr/bin... Symlinking /usr/local/bin/perl5.14.4 to /usr/bin/perl Symlinking /usr/local/bin/perl5.14.4 to /usr/bin/perl5 Done. Cleaning up /etc/make.conf... Done. Spamming /etc/make.conf... Done. done ===> Returning to build of R-3.0.1 ========================================================================= =======================<phase: extract >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by R-3.0.1 for building ===> Extracting for R-3.0.1 => SHA256 Checksum OK for R-3.0.1.tar.gz. ========================================================================= =======================<phase: patch-depends >============================ ===> R-3.0.1 depends on file: /usr/local/bin/perl5.14.4 - found ========================================================================= =======================<phase: patch >============================ ===> Patching for R-3.0.1 ===> Applying FreeBSD patches for R-3.0.1 ========================================================================= =======================<phase: build-depends >============================ ===> R-3.0.1 depends on file: /usr/local/bin/gsed - not found ===> Verifying install for /usr/local/bin/gsed in /usr/ports/textproc/gsed ===> Installing existing package /packages/All/gsed-4.2.2.txz Installing gsed-4.2.2... done ===> Returning to build of R-3.0.1 ===> R-3.0.1 depends on executable: gcc46 - not found ===> Verifying install for gcc46 in /usr/ports/lang/gcc ===> Installing existing package /packages/All/gcc-4.6.3.txz Installing gcc-4.6.3...Installing mpfr-3.1.2...Installing gmp-5.1.2... done done Installing mpc-0.9... done Installing gcc-ecj-4.5... done Installing gettext-0.18.3...Installing libiconv-1.14_1... done done Installing binutils-2.23.2... done done ===> Returning to build of R-3.0.1 ===> R-3.0.1 depends on file: /usr/local/bin/as - found ===> R-3.0.1 depends on file: /usr/local/libdata/pkgconfig/x11.pc - not found ===> Verifying install for /usr/local/libdata/pkgconfig/x11.pc in /usr/ports/x11/libX11 ===> Installing existing package /packages/All/libX11-1.6.0,1.txz Installing libX11-1.6.0,1...Installing xproto-7.0.24... done Installing libxcb-1.9.1...Installing libXdmcp-1.1.1... done Installing libXau-1.0.8... done Installing libxml2-2.8.0_2...Installing pkgconf-0.9.2_1... done done Installing libpthread-stubs-0.3_3... done done Installing kbproto-1.0.6... done done ===> Returning to build of R-3.0.1 ===> R-3.0.1 depends on file: /usr/local/libdata/pkgconfig/xmu.pc - not found ===> Verifying install for /usr/local/libdata/pkgconfig/xmu.pc in /usr/ports/x11-toolkits/libXmu ===> Installing existing package /packages/All/libXmu-1.1.1,1.txz Installing libXmu-1.1.1,1...Installing xextproto-7.2.1... done Installing libXext-1.3.2,1... done Installing libSM-1.2.1,1...Installing libICE-1.0.8,1... done done Installing libXt-1.1.4,1... done done ===> Returning to build of R-3.0.1 ===> R-3.0.1 depends on file: /usr/local/libdata/pkgconfig/xt.pc - found ===> R-3.0.1 depends on file: /usr/local/bin/perl5.14.4 - found ========================================================================= =======================<phase: lib-depends >============================ ===> R-3.0.1 depends on shared library: icui18n - not found ===> Verifying install for icui18n in /usr/ports/devel/icu ===> Installing existing package /packages/All/icu-50.1.2.txz Installing icu-50.1.2... done ===> Returning to build of R-3.0.1 ===> R-3.0.1 depends on shared library: pcre - not found ===> Verifying install for pcre in /usr/ports/devel/pcre ===> Installing existing package /packages/All/pcre-8.33.txz Installing pcre-8.33... done <snip>
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