Skip site navigation (1)Skip section navigation (2)
Date:      Sat, 21 Aug 2021 10:21:26 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - 130powerpc64-quarterly][biology/vcflib] Failed for vcflib-1.0.0.r1.130_1 in build
Message-ID:  <202108211021.17LALQaE010703@foul1.nyi.freebsd.org>

next in thread | raw e-mail | index | archive | help

You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     jwb@FreeBSD.org
Log URL:        http://foul1.nyi.freebsd.org/data/130powerpc64-quarterly/f329614a0401/logs/vcflib-1.0.0.r1.130_1.log
Build URL:      http://foul1.nyi.freebsd.org/build.html?mastername=130powerpc64-quarterly&build=f329614a0401
Log:

=>> Building biology/vcflib
build started at Sat Aug 21 10:20:39 UTC 2021
port directory: /usr/ports/biology/vcflib
package name: vcflib-1.0.0.r1.130_1
building for: FreeBSD 130powerpc64-quarterly-job-11 13.0-RELEASE FreeBSD 13.0-RELEASE powerpc
maintained by: jwb@FreeBSD.org
Makefile ident: 
Poudriere version: 3.2.8-21-g883afb07
Host OSVERSION: 1400008
Jail OSVERSION: 1300139
Job Id: 11

---Begin Environment---
SHELL=/bin/csh
OSVERSION=1300139
UNAME_v=FreeBSD 13.0-RELEASE
UNAME_r=13.0-RELEASE
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-21-g883afb07
MASTERMNT=/usr/local/poudriere/data/.m/130powerpc64-quarterly/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/130powerpc64-quarterly/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=130powerpc64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/130powerpc64-quarterly/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
jwb@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/vcflib/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/vcflib/work  HOME=/wrkdirs/usr/ports/biology/vcflib/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/vcflib/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/vcflib/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/vcflib/work  HOME=/wrkdirs/usr/ports/biology/vcflib/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/vcflib/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe  -fstack-protector-strong -fno-strict-aliasing "  CPP="cpp" CPPFLAGS=""  LDFLAGS=" -fstack-protector-strong " LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing  -I/usr/local/include/smithwaterman  -I/usr/local/include/multichoose  -I/usr/local/include/filevercmp  -I/usr/local/include/fastahack  -I/usr/local/include/intervaltree  -DVERSION='\"1.0.0.r1.130\"' "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  
 -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/vcflib"  EXAMPLESDIR="share/examples/vcflib"  DATADIR="share/vcflib"  WWWDIR="www/vcflib"  ETCDIR="etc/vcflib"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/vcflib DOCSDIR=/usr/local/share/doc/vcflib EXAMPLESDIR=/usr/local/share/examples/vcflib  WWWDIR=/usr/local/www/vcflib ETCDIR=/usr/local/etc/vcflib
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: powerpc64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: powerpc64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=yes
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: powerpc64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=powerpc64
PPC_ABI=ELFv2
OPSYS=FreeBSD
_OSRELEASE=13.0-RELEASE
OSREL=13.0
OSVERSION=1300139
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=524288
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  33554432
stack size              (kbytes, -s)  524288
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   vcflib-1.0.0.r1.130_1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.16.3.txz
[130powerpc64-quarterly-job-11] Installing pkg-1.16.3...
[130powerpc64-quarterly-job-11] Extracting pkg-1.16.3: .......... done
===>   vcflib-1.0.0.r1.130_1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of vcflib-1.0.0.r1.130_1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License MIT accepted by the user
===> Fetching all distfiles required by vcflib-1.0.0.r1.130_1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License MIT accepted by the user
===> Fetching all distfiles required by vcflib-1.0.0.r1.130_1 for building
=> SHA256 Checksum OK for ekg-vcflib-v1.0.0-rc1-130-g7e3d806_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License MIT accepted by the user
===> Fetching all distfiles required by vcflib-1.0.0.r1.130_1 for building
===>  Extracting for vcflib-1.0.0.r1.130_1
=> SHA256 Checksum OK for ekg-vcflib-v1.0.0-rc1-130-g7e3d806_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for vcflib-1.0.0.r1.130_1
===>  Applying FreeBSD patches for vcflib-1.0.0.r1.130_1 from /usr/ports/biology/vcflib/files
===========================================================================
=======================<phase: build-depends  >============================
===>   vcflib-1.0.0.r1.130_1 depends on executable: fastahack - not found
===>   Installing existing package /packages/All/fastahack-1.0.0.txz
[130powerpc64-quarterly-job-11] Installing fastahack-1.0.0...
[130powerpc64-quarterly-job-11] Extracting fastahack-1.0.0: .......... done
===>   vcflib-1.0.0.r1.130_1 depends on executable: fastahack - found
===>   Returning to build of vcflib-1.0.0.r1.130_1
===>   vcflib-1.0.0.r1.130_1 depends on executable: filevercmp - not found
===>   Installing existing package /packages/All/filevercmp-g20151117.txz
[130powerpc64-quarterly-job-11] Installing filevercmp-g20151117...
[130powerpc64-quarterly-job-11] Extracting filevercmp-g20151117: ...... done
===>   vcflib-1.0.0.r1.130_1 depends on executable: filevercmp - found
===>   Returning to build of vcflib-1.0.0.r1.130_1
===>   vcflib-1.0.0.r1.130_1 depends on executable: fsom - not found
===>   Installing existing package /packages/All/fsom-g20151117_2.txz
[130powerpc64-quarterly-job-11] Installing fsom-g20151117_2...
[130powerpc64-quarterly-job-11] Extracting fsom-g20151117_2: ........ done
===>   vcflib-1.0.0.r1.130_1 depends on executable: fsom - found
===>   Returning to build of vcflib-1.0.0.r1.130_1
===>   vcflib-1.0.0.r1.130_1 depends on package: multichoose>=1.0.3 - not found
===>   Installing existing package /packages/All/multichoose-1.0.3.2.txz
[130powerpc64-quarterly-job-11] Installing multichoose-1.0.3.2...
[130powerpc64-quarterly-job-11] `-- Installing python38-3.8.10...
[130powerpc64-quarterly-job-11] |   `-- Installing gettext-runtime-0.21...
[130powerpc64-quarterly-job-11] |   | `-- Installing indexinfo-0.3.1...
[130powerpc64-quarterly-job-11] |   | `-- Extracting indexinfo-0.3.1: .... done
[130powerpc64-quarterly-job-11] |   `-- Extracting gettext-runtime-0.21: .......... done
[130powerpc64-quarterly-job-11] |   `-- Installing libffi-3.3_1...
[130powerpc64-quarterly-job-11] |   `-- Extracting libffi-3.3_1: .......... done
[130powerpc64-quarterly-job-11] |   `-- Installing mpdecimal-2.5.1...
[130powerpc64-quarterly-job-11] |   `-- Extracting mpdecimal-2.5.1: .......... done
[130powerpc64-quarterly-job-11] |   `-- Installing readline-8.1.1...
[130powerpc64-quarterly-job-11] |   `-- Extracting readline-8.1.1: .......... done
[130powerpc64-quarterly-job-11] `-- Extracting python38-3.8.10: .......... done
[130powerpc64-quarterly-job-11] Extracting multichoose-1.0.3.2: .......... done
=====
Message from python38-3.8.10:

--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

py38-gdbm       databases/py-gdbm@py38
py38-sqlite3    databases/py-sqlite3@py38
py38-tkinter    x11-toolkits/py-tkinter@py38
===>   vcflib-1.0.0.r1.130_1 depends on package: multichoose>=1.0.3 - found
===>   Returning to build of vcflib-1.0.0.r1.130_1
===>   vcflib-1.0.0.r1.130_1 depends on executable: interval_tree_test - not found
===>   Installing existing package /packages/All/intervaltree-g20151213_2.txz
[130powerpc64-quarterly-job-11] Installing intervaltree-g20151213_2...
[130powerpc64-quarterly-job-11] Extracting intervaltree-g20151213_2: ..... done
===>   vcflib-1.0.0.r1.130_1 depends on executable: interval_tree_test - found
===>   Returning to build of vcflib-1.0.0.r1.130_1
===>   vcflib-1.0.0.r1.130_1 depends on package: gmake>=4.3 - not found
===>   Installing existing package /packages/All/gmake-4.3_2.txz
[130powerpc64-quarterly-job-11] Installing gmake-4.3_2...
[130powerpc64-quarterly-job-11] Extracting gmake-4.3_2: .......... done
===>   vcflib-1.0.0.r1.130_1 depends on package: gmake>=4.3 - found
===>   Returning to build of vcflib-1.0.0.r1.130_1
===========================================================================
=======================<phase: lib-depends    >============================
===>   vcflib-1.0.0.r1.130_1 depends on shared library: libhts.so - not found
===>   Installing existing package /packages/All/htslib-1.12.txz
[130powerpc64-quarterly-job-11] Installing htslib-1.12...
[130powerpc64-quarterly-job-11] `-- Installing curl-7.78.0...
[130powerpc64-quarterly-job-11] |   `-- Installing ca_root_nss-3.63...
[130powerpc64-quarterly-job-11] |   `-- Extracting ca_root_nss-3.63: ........ done
[130powerpc64-quarterly-job-11] |   `-- Installing libnghttp2-1.43.0...
[130powerpc64-quarterly-job-11] |   `-- Extracting libnghttp2-1.43.0: .......... done
[130powerpc64-quarterly-job-11] `-- Extracting curl-7.78.0: .......... done
[130powerpc64-quarterly-job-11] `-- Installing libdeflate-1.7...
[130powerpc64-quarterly-job-11] `-- Extracting libdeflate-1.7: .......... done
[130powerpc64-quarterly-job-11] Extracting htslib-1.12: .......... done
=====
Message from ca_root_nss-3.63:

--
FreeBSD does not, and can not warrant that the certification authorities
whose certificates are included in this package have in any way been
audited for trustworthiness or RFC 3647 compliance.

Assessment and verification of trust is the complete responsibility of the
system administrator.


This package installs symlinks to support root certificates discovery by
default for software that uses OpenSSL.

This enables SSL Certificate Verification by client software without manual
intervention.

If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.

  * /etc/ssl/cert.pem
  * /usr/local/etc/ssl/cert.pem
  * /usr/local/openssl/cert.pem
===>   vcflib-1.0.0.r1.130_1 depends on shared library: libhts.so - found (/usr/local/lib/libhts.so)
===>   Returning to build of vcflib-1.0.0.r1.130_1
===>   vcflib-1.0.0.r1.130_1 depends on shared library: libtabix.so - not found
===>   Installing existing package /packages/All/tabixpp-1.0.0.10_1.txz
[130powerpc64-quarterly-job-11] Installing tabixpp-1.0.0.10_1...
[130powerpc64-quarterly-job-11] Extracting tabixpp-1.0.0.10_1: ........ done
===>   vcflib-1.0.0.r1.130_1 depends on shared library: libtabix.so - found (/usr/local/lib/libtabix.so)
===>   Returning to build of vcflib-1.0.0.r1.130_1
===>   vcflib-1.0.0.r1.130_1 depends on shared library: libsw.so - not found
===>   Installing existing package /packages/All/smithwaterman-g20160702.txz
[130powerpc64-quarterly-job-11] Installing smithwaterman-g20160702...
[130powerpc64-quarterly-job-11] Extracting smithwaterman-g20160702: .......... done
===>   vcflib-1.0.0.r1.130_1 depends on shared library: libsw.so - found (/usr/local/lib/libsw.so)
===>   Returning to build of vcflib-1.0.0.r1.130_1
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for vcflib-1.0.0.r1.130_1
===========================================================================
=======================<phase: build          >============================
===>  Building for vcflib-1.0.0.r1.130_1
gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.0-rc1-130-g7e3d806'
c++ -c -o src/Variant.o src/Variant.cpp -I/usr/local/include -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  -I/usr/local/include/smithwaterman  -I/usr/local/include/multichoose  -I/usr/local/include/filevercmp  -I/usr/local/include/fastahack  -I/usr/local/include/intervaltree  -DVERSION='"1.0.0.r1.130"'  -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -fPIC --std=c++11
c++ -c -o src/rnglib.o src/rnglib.cpp -I/usr/local/include -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  -I/usr/local/include/smithwaterman  -I/usr/local/include/multichoose  -I/usr/local/include/filevercmp  -I/usr/local/include/fastahack  -I/usr/local/include/intervaltree  -DVERSION='"1.0.0.r1.130"'  -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -fPIC --std=c++11
c++ -c -o src/var.o src/var.cpp -I/usr/local/include -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  -I/usr/local/include/smithwaterman  -I/usr/local/include/multichoose  -I/usr/local/include/filevercmp  -I/usr/local/include/fastahack  -I/usr/local/include/intervaltree  -DVERSION='"1.0.0.r1.130"'  -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -fPIC --std=c++11
src/Variant.cpp:174:1: warning: non-void function does not return a value in all control paths [-Wreturn-type]
};
^
src/Variant.cpp:502:5: warning: non-void function does not return a value in all control paths [-Wreturn-type]
    }
    ^
src/Variant.cpp:627:5: warning: non-void function does not return a value in all control paths [-Wreturn-type]
    }
    ^
src/Variant.cpp:661:5: warning: non-void function does not return a value in all control paths [-Wreturn-type]
    }
    ^
src/Variant.cpp:699:5: warning: non-void function does not return a value in all control paths [-Wreturn-type]
    }
    ^
c++ -c -o src/pdflib.o src/pdflib.cpp -I/usr/local/include -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  -I/usr/local/include/smithwaterman  -I/usr/local/include/multichoose  -I/usr/local/include/filevercmp  -I/usr/local/include/fastahack  -I/usr/local/include/intervaltree  -DVERSION='"1.0.0.r1.130"'  -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -fPIC --std=c++11
c++ -c -o src/cdflib.o src/cdflib.cpp -I/usr/local/include -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  -I/usr/local/include/smithwaterman  -I/usr/local/include/multichoose  -I/usr/local/include/filevercmp  -I/usr/local/include/fastahack  -I/usr/local/include/intervaltree  -DVERSION='"1.0.0.r1.130"'  -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -fPIC --std=c++11
c++ -c -o src/split.o src/split.cpp -I/usr/local/include -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  -I/usr/local/include/smithwaterman  -I/usr/local/include/multichoose  -I/usr/local/include/filevercmp  -I/usr/local/include/fastahack  -I/usr/local/include/intervaltree  -DVERSION='"1.0.0.r1.130"'  -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -fPIC --std=c++11
c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  -I/usr/local/include/smithwaterman  -I/usr/local/include/multichoose  -I/usr/local/include/filevercmp  -I/usr/local/include/fastahack  -I/usr/local/include/intervaltree  -DVERSION='"1.0.0.r1.130"'  -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -fPIC --std=c++11   -c -o src/ssw.o src/ssw.cpp
In file included from src/ssw.cpp:38:
In file included from /usr/lib/clang/11.0.1/include/emmintrin.h:13:
In file included from /usr/lib/clang/11.0.1/include/xmmintrin.h:13:
/usr/lib/clang/11.0.1/include/mmintrin.h:33:5: error: use of undeclared identifier '__builtin_ia32_emms'; did you mean '__builtin_isless'?
    __builtin_ia32_emms();
    ^
/usr/lib/clang/11.0.1/include/mmintrin.h:33:5: note: '__builtin_isless' declared here
/usr/lib/clang/11.0.1/include/mmintrin.h:33:25: error: too few arguments to function call, expected 2, have 0
    __builtin_ia32_emms();
                        ^
/usr/lib/clang/11.0.1/include/mmintrin.h:50:19: error: use of undeclared identifier '__builtin_ia32_vec_init_v2si'
    return (__m64)__builtin_ia32_vec_init_v2si(__i, 0);
                  ^
/usr/lib/clang/11.0.1/include/mmintrin.h:67:12: error: use of undeclared identifier '__builtin_ia32_vec_ext_v2si'
    return __builtin_ia32_vec_ext_v2si((__v2si)__m, 0);
           ^
/usr/lib/clang/11.0.1/include/mmintrin.h:129:19: error: use of undeclared identifier '__builtin_ia32_packsswb'
    return (__m64)__builtin_ia32_packsswb((__v4hi)__m1, (__v4hi)__m2);
                  ^
/usr/lib/clang/11.0.1/include/mmintrin.h:159:19: error: use of undeclared identifier '__builtin_ia32_packssdw'
    return (__m64)__builtin_ia32_packssdw((__v2si)__m1, (__v2si)__m2);
                  ^
/usr/lib/clang/11.0.1/include/mmintrin.h:189:19: error: use of undeclared identifier '__builtin_ia32_packuswb'
    return (__m64)__builtin_ia32_packuswb((__v4hi)__m1, (__v4hi)__m2);
                  ^
/usr/lib/clang/11.0.1/include/mmintrin.h:216:19: error: use of undeclared identifier '__builtin_ia32_punpckhbw'
    return (__m64)__builtin_ia32_punpckhbw((__v8qi)__m1, (__v8qi)__m2);
                  ^
/usr/lib/clang/11.0.1/include/mmintrin.h:239:19: error: use of undeclared identifier '__builtin_ia32_punpckhwd'
    return (__m64)__builtin_ia32_punpckhwd((__v4hi)__m1, (__v4hi)__m2);
                  ^
/usr/lib/clang/11.0.1/include/mmintrin.h:260:19: error: use of undeclared identifier '__builtin_ia32_punpckhdq'
    return (__m64)__builtin_ia32_punpckhdq((__v2si)__m1, (__v2si)__m2);
                  ^
/usr/lib/clang/11.0.1/include/mmintrin.h:287:19: error: use of undeclared identifier '__builtin_ia32_punpcklbw'
    return (__m64)__builtin_ia32_punpcklbw((__v8qi)__m1, (__v8qi)__m2);
                  ^
/usr/lib/clang/11.0.1/include/mmintrin.h:310:19: error: use of undeclared identifier '__builtin_ia32_punpcklwd'
    return (__m64)__builtin_ia32_punpcklwd((__v4hi)__m1, (__v4hi)__m2);
                  ^
/usr/lib/clang/11.0.1/include/mmintrin.h:331:19: error: use of undeclared identifier '__builtin_ia32_punpckldq'
    return (__m64)__builtin_ia32_punpckldq((__v2si)__m1, (__v2si)__m2);
                  ^
/usr/lib/clang/11.0.1/include/mmintrin.h:352:19: error: use of undeclared identifier '__builtin_ia32_paddb'
    return (__m64)__builtin_ia32_paddb((__v8qi)__m1, (__v8qi)__m2);
                  ^
/usr/lib/clang/11.0.1/include/mmintrin.h:373:19: error: use of undeclared identifier '__builtin_ia32_paddw'
    return (__m64)__builtin_ia32_paddw((__v4hi)__m1, (__v4hi)__m2);
                  ^
/usr/lib/clang/11.0.1/include/mmintrin.h:394:19: error: use of undeclared identifier '__builtin_ia32_paddd'
    return (__m64)__builtin_ia32_paddd((__v2si)__m1, (__v2si)__m2);
                  ^
/usr/lib/clang/11.0.1/include/mmintrin.h:416:19: error: use of undeclared identifier '__builtin_ia32_paddsb'
    return (__m64)__builtin_ia32_paddsb((__v8qi)__m1, (__v8qi)__m2);
                  ^
/usr/lib/clang/11.0.1/include/mmintrin.h:439:19: error: use of undeclared identifier '__builtin_ia32_paddsw'
    return (__m64)__builtin_ia32_paddsw((__v4hi)__m1, (__v4hi)__m2);
                  ^
/usr/lib/clang/11.0.1/include/mmintrin.h:461:19: error: use of undeclared identifier '__builtin_ia32_paddusb'
    return (__m64)__builtin_ia32_paddusb((__v8qi)__m1, (__v8qi)__m2);
                  ^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
gmake[1]: *** [<builtin>: src/ssw.o] Error 1
gmake[1]: *** Waiting for unfinished jobs....
5 warnings generated.
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.0-rc1-130-g7e3d806'
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/vcflib



Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?202108211021.17LALQaE010703>