Skip site navigation (1)Skip section navigation (2)
Date:      Wed, 17 Jul 2002 08:13:01 -0700 (PDT)
From:      Nakata Maho <chat95@mbox.kyoto-inet.or.jp>
To:        freebsd-gnats-submit@FreeBSD.org
Subject:   ports/40694: New port biology/pymol Very beautiful molecular viewer using OpenGL
Message-ID:  <200207171513.g6HFD18M040903@www.freebsd.org>

next in thread | raw e-mail | index | archive | help

>Number:         40694
>Category:       ports
>Synopsis:       New port biology/pymol Very beautiful molecular viewer using OpenGL
>Confidential:   no
>Severity:       non-critical
>Priority:       medium
>Responsible:    freebsd-ports
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          change-request
>Submitter-Id:   current-users
>Arrival-Date:   Wed Jul 17 08:20:01 PDT 2002
>Closed-Date:
>Last-Modified:
>Originator:     Nakata Maho
>Release:        FreeBSD 4.6-STABLE
>Organization:
Praivete
>Environment:
FreeBSD debussy.private.org 4.6-STABLE FreeBSD 4.6-STABLE #0: Sun Jul 14 07:04:47 JST 2002     maho@debussy.private.org:/work/cvsup/src/sys/compile/MAHO-DEBUSSY-4.x-STABLE  i386

>Description:
I made a new port for FreeBSD, biology/pymol.
Pymol is molecular viewer written by python.
This viewer is free, but very powerful, and produces extremely
beautiful pictures of proteins in different format(simple view,
3d-stereo view, and ribbon structure, and so on) and movies.
See for example, visiting http://pymol.sourceforge.net/pmimag.html
or simply typing,
pymol /usr/local/share/pymol/dat/1tii.pdb
after installing this new port.

I checked with portlint, and it says, "looks fine".
Thank you very much for showing me your interest.
>How-To-Repeat:
      
>Fix:
begin 644 pymol.tar.gz
M'XL(`+6'-3T``^U<>W/;.)+/O^:G0$U2N_$YE$B]_*C-GAU)\7C'MERR??%<
M794*(B&19Q+D\&%;F?5WOP9`2I1,4$@FR<[=$3,11?0/#:"!?H&4PX4?>,U7
MW[6@CK'?[:)7")G[79-=H1C9-;M!0.FVC7:O9P*,75^A[O<=EBAIG.`(H5<^
M=H(JW*-#B/<C!O1C2\C7/[R?ZZ'GQLEWZ<,TC%ZGL['NR_5O=7N]UG+]37,?
MUK_5-HU7R/@NH]DH^?I'05`Y^_^CZS]U:9/O`4WL!#^P4X_$S>%30FCL!K3O
MX3ANQ,$&?6+Y=DGMW$LG-/7%?3F]BI9(B4%(Z-RKY"T@,K+E$#]<-"<3E[K)
M9-((%^4`'%E2VM0':6WEP%%6X/N8VG$U*B+82UR?5*-@AR9;(&GB>G)$0.T)
M]J<DJH;X_FQ6B:B83>1:]U*J99ERFH/]<+M0`1;-Y4*PP@<IS7:MQ)Y*R3,<
M)]O[GT5X[A.:Q%\"Q1:,^'Y3M<I@R<(C5`WL8258-%>"Q50-%JK`IH1^5IS&
M-$VP&M)*)HIS9DBU:3.DVLPY4FGR@+06L2)R[JGV#E91&;E01#JNK8Q472/'
M5962XZI*R?54>_>(JI0\Y37R2:*(#!W5<891H(B,F;560B:.,C)27:-DH<KS
M`7M*R(7E!5^@]`SND/`+\4]?`H=P(<&VJVBP5DU4\4K[;!9$/O9LXBQL);8<
M[[MJ8$4KHVAB%.V+HG%1M"R*9D71IB@:%$5KHFA*%.T(P!S%O45]-9BRYZ3*
MGI,J>TZJ[#FILN>DRIZ3*GM.JNPYJ;+GI,J>DRI[3JKL.:FRYZ3*GI,J>TZJ
M[#FILN>DRIZ3*GM.JNPYJ;+GI,J>DRI[SA"\H**]5Y2FHBA7R>EVK*+,X]2;
M!6HV3G%M%!=&<54JEV2.?1+'\DQV[LOS8X=`#N]+R6X@)7EQ(J7Y6)X1^SB4
MTWQ;3@MLXLDG`E52&B7NW)D&\E.&L"(-!['+:1[/I&74*$B(2[?1MYR`K*$.
M#[?B*@]+<E!$8M=.B5R<L2UG`DV)Y6"70N@%06J$$R+??"7@E@HXMB:>.XUP
M5.$!X\![J#J!2EQZ3Z+F!;XG,W`\E:"MIR<9KGJQ,I"X:X217PF[)XO'())O
M^0SFP_@/#R>QZX?>ULDRL"(TQ)%_V&G8.%&`3:+85X/V%&'J'`\58?F\%=&/
MGJT$_1*V.=:E825VZP%KAJL^8GT$(FQ&>UI!WF)>!&:K/7A:?"ZA!7X(>C7A
MM2_)'DZIY<BHXE2<GP^_.!-?T=C!^DMZZ,\GR7WS9!HG$;:2D[#$I628?N`%
MT=!VDS+SGV$&Q"_Q<QGQZN*TBO\U2;9P!P0LYEQ*EUN>#!#ZCXUD_KF<R)X2
M)6G5034#/CY5`?C=-KJ%/6^*RP[3,_J\3(:"5.;6,Y)X'%$NGPQ!D\@M\<\%
M<N!Y51Q`V20KP.\(K-\6<NGR"NI32"*716E5+)["(*H&@!;2"L#,E6TB?N<0
M+ZP@@TVJ[M^E#X$%0@I*HI7L#L,J6'#[X7QT?7O1:Y6C"$VE'(('M\24K8CR
MX0E[L'6+9K`O0LX]V$%EH>P&,%7GF;)_BERKGO"\Q+*/2L;@@N(R8[^B5D@Y
M#!XBO)!1?TM)M*AH'84ESR?%74P\8E5M/P&0*UDL-:&"[,#NME*I5&*(TV.G
M$=)Y*;G\&:6X>X"T4,H7]O-CQ;`>W<\XLK<N<`:3/4A<`]GLV7<B7:,<Y8)7
MH&69R1H,8N)$OEDRD(>G1"J=#..G"6;!?>R6!!!KR!"[T01LV198;*5>6+7B
M`E<%>)*$'>+NJ6*C/SV6Y6SQW',3_O@^AH4B&78\/!E<#->J($ILFHGK\K!L
MD]#&GBDG1&W[!0$LN_N4QW`E#5VO55K/3F<J")!2E1+*AA#[X/H-LP'W+VBP
M2(O2;E:A:9$"87'S@\&SQ9?5K;+JOF$8YF\IVS*^5T8U#1"1%\C(+8,G]Q)B
ME^^1<F+;X*E_.;%K^"D$\#)RS[#!I+'(O9R^;T0DE!$/#!ZQR!J;AB'LI8S>
M,6"G1A4,N@86FE]*[AJ&[\:6A-HS#&$ORZ@P-&-I%,L!?+G""D#+6'F:<D3;
M*#B4<DC'6`9UY8"N48BH2N@]8R.P+,'L&X6XKJ2;F_*-?E.^T6^,=EGU+6.R
MP3PBLX)>>,&\C)KKA80L]**2N*F\.9$KC:2E4)I*HH1MKE&2MDN-DM"%1DF(
M2XUZ:7PW$2^MZ2:BO(^55DKH*ZV4`'*ME(UQ"2AOGZMM.357VU)J46TE@)7:
M2@`%M94@BFHK@:S45@)8J:T$L*ZW$E!1<<L@3''+ZF_+ZE.Z=@^QZ.-:!:1-
M_J9B/]CN;+96D\4<Q[8;13[:Z+BLFATPE52S,ZJ7U7F5/)2J0A0R$#68$FH[
MJ`J1IZ,5&`F)GX;(::LCE2I,.6WMZ*X2LCKHKH0M'P!5HW`L69@,P%]EK$2P
M=S6K`*6TM4I-^[;O_XJ>V/O?-HFMZ-LRSTKU^]\([7=Z_/WOMMGN&"W^_G?+
M-.OWOW]$N5I<C,Z1&R.,8",02`A!&O,(AXYKQ2A>Q`GQT:.;.`A31"`]LFUB
MHZM%X@04N13\9!A!N!!IL'W<.07:+(@0.W;7V;D[>G#C%'M@^]BA%_"P$?!V
M;90]I&*5P4QSW+FC_\:`R:)L'*X/B6_,FV,*-ZQ=W$!G"1OY+/6\!2+BA?6I
M1S0.>\`NY-0>0;.($)0$B#R`WPPH&Q)&B4/03V(6/R$/+!R-24,3PK!@IE."
MTA@F`^U$.%(^!"&9E((,+&*#!8$F!#-6,#3&!WMQ@$(2L=>VD(_I`@70=80>
ML)?RT24XOH_1VSBU0,(QROPRNAI\0.Q96KRKP1!P#"E_@A9!"B)G%R;AF.#(
M<AJ:]NG3IR/D)$EXU!06&;+G-+((]#DG#4J29H7-6.D_.R*&&7R'/;9-_]%^
M*]?_]GZ;_?ZGU6UU:OW_$:6@_Q_'PR'?WZ.KX:5^/;H=]X<%9>0O!K"]*8S"
M-_9#=?G7%*'_^:/[[]/'%OUOM5NMPN__#*;_1J]5Z_^/**_1)7E$+$N+D07I
M'$L<P2?[V89@WOQH1T2>K]&`.4+A#^VCG9V=?Z3@>,V#=ZAE&"V@?W("G]7O
M7.)[G&!T@9T`_0W"XN2P>^Q/@Z?&_2)(`MT%I]0(HL9_AW_77D.[-Q_!1W^X
M'KS1M*O1^.;RY&+X/NN4W?_'<'Q]-KI\OV,T#EI:_^1F>#H:GPVOW^],W0`2
MQ85V<7)],QQ/KL]N6.V;WPOW$V'(/H[&I\-G;8UP^V%P-LX[&IQ=%SO6C<E!
M2X\C2QO>W8Q/^C<`_WCW?H<_(08V9Y<W\&\(S:NFIVD?;L_.!Y/!$$SJ@`_M
MZM>;GT>7?`3G9VP`STVH/.G_<G(ZG/#;R]0GD'3E5\A7CP`!<KCF9`@]'/#S
M.A5D\/_C7Z['_?=+;_KF=ZC)&6?B?-;%]TR4S]KM]7!R>G'R"\QW`2D&NQT/
MSRZOSD_Z0V"5UXG1"HP&48X>XL1RCK2=MV]^[U\]B[Z@]V?V["@-FV.6L#3`
M3:1/!9JH97MJ5PN#.-G&140Q$)`(3GKD[#_)0;N<SW+TD_[%X!G]-7YW?#4>
M?CR[.WX'4^??GM_-__HU;,2*9:+C[-9J-M@6)VNSS0`&QO-@LL=;)HN6XVRN
M?I7)6EWPU2R0!:G!(FV7181YHB@'PU9PGX%NV87^61WZRU^@YN8$FNB6,T,Z
M:J!_HO_2=G;RVB=6J??+.38(M6$8Y3T73T8VNDX(Q+-?T7619<.EEI?:!/UM
M&ML-9L(:_OW?Z[CDBXI82YYJ?+>_`K#Z_;\D_L]__]_:-PRS`_[?[+#X_X?^
M_O__J?\OKC^WRCK&W[J/+?%?KVUF\5^KM]_MP'?(!#OU[_]_2-%U':T\%D0M
M[GSGQDD1A':@AL@X.#+-HZXI(KR]O;T">`/7:A\9;8$[/D9ZYQVLY![_/#[6
MT&OX7T<?4M=CKQ,@_:L+XP-COB&>AWYBP_@).<$C.ZB9DX1=1$:KZ5>_PG5R
M=7+S,WJ/FFE,HKCYB*.(Y*YU;PVQ]#&B@S]>\CD/2`A.DE#+)?%7SCN;\YW^
MZ%([>(PU_0YB1Q8MPL#U<YA<U+PSS7&OZ;E3()Y=]G/B68&8^4MM;ZWUF]^!
M^N'D>OC,6^^MM2X0\]9B+.+LC$F9AT+#NR&3X=N52'?9RW99(,.A>Q70`@QE
M,!@B>E^\R\:T[')MF"\ZSD:;<6TU3`@L]!TE9!YX+T<L[REONQDC0F=[+SJ3
M@9?]"<F.^`&A>%,1>\@N;!]-AV1$;>("NK;.+Z!\N:LYYB&6?M804#E'QNT;
MJHZ>FPM^H'Q^=GE[QPY(,47B+4M^>BH"WRJMTO;6^&2)YE=Q$LMS+8[$Q8\F
M^)J`2*ZS'9WOU5VD>^PY'EQ.S_G'+7S:'GR$S/IY=WX*#?XS@_K:GC*3\O:Y
M4O+SZX#.W'DJ3M<U-!A^9)SUP42LUL5H<'L^7-U?WEY<_8HR#C^#*7TD:,H%
MQH-MNS!5Q+-9QBPC9:T^00J,H((U3?C#:6:(.9-_9P.XOF%M@CQ/6?[Q&)VW
M/K4L-`K%>3I?:Y;S:7J_/[JZ,5E#OW/08^.=N+V#WF2"]!E[%*>S1!CIGR"Y
M0CJFL0O??3=F;U[J[/<W0;((8<Q[I7UD^T#;6_;R^H]U(P2Q%!7OY&HQ`MV%
MM6-F;'1Z+FP:*EU6MJ#PZ7YK[]-W@B`F:$0K]_8V5ER$_3X7H>]^)G:V/"VV
M/*,VB"JE[&4`W0N"$+S<+/#=1)]%V"=Z&/#'1)FH6US4BDU6'5]%`<2H('.H
M6_4<SDMZSUH-R#2=SUD+'HWLO]N':(1]\FCD3R=CH0J?@N@>1T%*A;6Z8]OT
MH-<<C,^0.%.Q81?"K@.+Y7-$9K:XJF5;O8)';OTJN8"2GV8&`]I,/HW&OYR,
M1[>7`R$V^!0`+M?>X3OS`.VQRZ&0++H,D.5@RAZ64?['#;P%BLAOJ<L,QI1X
M8&'`P9%OMPAL+\)X+7#8P0.)(A?\%=0<L9BNWX=X3D.9UQ(6MN#&=M<,;EZ3
MAT>[K.EK-*3<0XB':N*I'#-O,XC%8";8AL"2*3BSI9DCY>([:S2:'EZ0R"A\
M-PO?6RPD@?QG5=,N?.\4OG>1MJ<(Y-]S.\O&WY]\/#\Y%3,7QFXW_];:S:21
M#;L@C66-&"+(I(BY/&47YEC8E6V'73[`[;!EW)=+"AH6ETV,]8@/5@Q\EZTB
M__;,E[HPFPS`9@G__:LSJ?^=I23_GW[K/K;D_Z:YW\F>_W;:[9;)\__Z^>^/
M*<QCR`_=R\X#VNTCR.F7YP'RQIOM.D?M_=7Y0)<YY&[NC]'[/U08AVM(_PL9
M/5AH'D8@"$W9VQY6`*F_E2`O^P$6"K(W*;+'V2SE@+D0^E#DPK-GUL3+#PU>
M8O+G#!F"!P7?8#YOZ<J1INPEFG(_NLNEV3+?==$>_\Q/6^SIDQC^*KEF[FQN
M3U]6ZYLU;U;SD_W.%+WY-VUO.?<O;UM;[#]#R5YG=>/$I;/*/X#[]67[^S_"
M_K<Z^T:WW6;/_\W6?FW_?T2Y&'31V_4GWNP1]RY$6+9A3F?M0WN*<1O;N+5_
M8!QB8XH-LXW-7@O7^EN7NM2E+G6I2UWJ4I>ZU*4N=:E+7>I2E[K4I2YUJ4M=
3ZE*7NM2E+G^B\C\:+7/^`'@`````
`
end
>Release-Note:
>Audit-Trail:
>Unformatted:

To Unsubscribe: send mail to majordomo@FreeBSD.org
with "unsubscribe freebsd-ports" in the body of the message




Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?200207171513.g6HFD18M040903>