Date: Sat, 4 Jul 2020 23:57:27 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 121armv7-quarterly][science/avogadrolibs] Failed for avogadrolibs-1.93.0 in build Message-ID: <202007042357.064NvRFS020911@beefy13.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: yuri@FreeBSD.org Ident: $FreeBSD: branches/2020Q3/science/avogadrolibs/Makefile 533149 2020-04-27 16:09:56Z yuri $ Log URL: http://beefy13.nyi.freebsd.org/data/121armv7-quarterly/541156/logs/avogadrolibs-1.93.0.log Build URL: http://beefy13.nyi.freebsd.org/build.html?mastername=121armv7-quarterly&build=541156 Log: =>> Building science/avogadrolibs build started at Sat Jul 4 23:52:39 UTC 2020 port directory: /usr/ports/science/avogadrolibs package name: avogadrolibs-1.93.0 building for: FreeBSD 121armv7-quarterly-job-05 12.1-RELEASE-p6 FreeBSD 12.1-RELEASE-p6 1201000 arm maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: branches/2020Q3/science/avogadrolibs/Makefile 533149 2020-04-27 16:09:56Z yuri $ Poudriere version: 3.2.8-5-gc81843e5 Host OSVERSION: 1300094 Jail OSVERSION: 1201000 Job Id: 05 ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv7 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1201000 UNAME_v=FreeBSD 12.1-RELEASE-p6 1201000 UNAME_r=12.1-RELEASE-p6 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local QEMU_EMULATING=1 USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-5-gc81843e5 MASTERMNT=/usr/local/poudriere/data/.m/121armv7-quarterly/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/121armv7-quarterly/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=121armv7-quarterly SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/121armv7-quarterly/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for avogadrolibs-1.93.0: HDF5=off: HDF-5 data format support LIBARCHIVE=on: Enable optional Libarchive features LIBMSYM=on: Enable optional features using libmsym MOLEQUEUE=on: Enable the MoleQueue dependent functionality OPENGL=on: 2D/3D rendering support via OpenGL QT5=on: Qt 5 toolkit support SPGLIB=on: Enable optional features using spglib VTK=off: Enable libraries that use VTK ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- QT_SELECT=qt5 QMAKEMODULES="/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/mkspecs/modules:/usr/local/lib/qt5/mkspecs/modules" XDG_DATA_HOME=/wrkdirs/usr/ports/science/avogadrolibs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/avogadrolibs/work HOME=/wrkdirs/usr/ports/science/avogadrolibs/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/avogadrolibs/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- QT_SELECT=qt5 QMAKEMODULES="/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/mkspecs/modules:/usr/local/lib/qt5/mkspecs/modules" XDG_DATA_HOME=/wrkdirs/usr/ports/science/avogadrolibs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/avogadrolibs/work HOME=/wrkdirs/usr/ports/science/avogadrolibs/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/avogadrolibs/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/avogadrolibs/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -fstack-protector-strong " LIBS="-L/usr/local/lib" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-ali asing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- HDF5="@comment " NO_HDF5="" LIBARCHIVE="" NO_LIBARCHIVE="@comment " LIBMSYM="" NO_LIBMSYM="@comment " MOLEQUEUE="" NO_MOLEQUEUE="@comment " OPENGL="" NO_OPENGL="@comment " QT5="" NO_QT5="@comment " SPGLIB="" NO_SPGLIB="@comment " VTK="@comment " NO_VTK="" CMAKE_BUILD_TYPE="release" QT_BINDIR="lib/qt5/bin" QT_INCDIR="include/qt5" QT_LIBDIR="lib/qt5" QT_ARCHDIR="lib/qt5" QT_PLUGINDIR="lib/qt5/plugins" QT_LIBEXECDIR="libexec/qt5" QT_IMPORTDIR="lib/qt5/imports" QT_QMLDIR="lib/qt5/qml" QT_DATADIR="share/qt5" QT_DOCDIR="share/doc/qt5" QT_L10NDIR="share/qt5/translations" QT_EXAMPLEDIR="share/examples/qt5" QT_TESTDIR="share/qt5/tests" QT_MKSPECDIR="lib/qt5/mkspecs" QT_QTCHOOSERDIR="etc/xdg/qtchooser" OSREL=12.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/avogadrolibs" EXAMPLESDIR="share/examples/avogadrolibs" DATADIR="share/avogadrolibs" WWWDIR="www/avogadrolibs" ETCDIR="etc/avogadrolibs" --End PLIST_SUB-- --SUB_LIST-- HDF5="@comment " NO_HDF5="" LIBARCHIVE="" NO_LIBARCHIVE="@comment " LIBMSYM="" NO_LIBMSYM="@comment " MOLEQUEUE="" NO_MOLEQUEUE="@comment " OPENGL="" NO_OPENGL="@comment " QT5="" NO_QT5="@comment " SPGLIB="" NO_SPGLIB="@comment " VTK="@comment " NO_VTK="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/avogadrolibs DOCSDIR=/usr/local/share/doc/avogadrolibs EXAMPLESDIR=/usr/local/share/examples/avogadrolibs WWWDIR=/usr/local/www/avogadrolibs ETCDIR=/usr/local/etc/avogadrolibs --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=arm MACHINE_ARCH=armv7 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_9d218390=FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 366581) (based on LLVM 8.0.1) Target: armv7-unknown-freebsd12.1-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _ALTCCVERSION_9d218390=none _CXXINTERNAL_9c45a5b1=FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 366581) (based on LLVM 8.0.1) Target: armv7-unknown-freebsd12.1-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_9d218390_58173849=yes CC_OUTPUT_9d218390_9bdba57c=yes CC_OUTPUT_9d218390_6a4fe7f5=yes CC_OUTPUT_9d218390_6bcac02b=yes CC_OUTPUT_9d218390_67d20829=yes CC_OUTPUT_9d218390_bfa62e83=yes CC_OUTPUT_9d218390_f0b4d593=yes CC_OUTPUT_9d218390_308abb44=yes CC_OUTPUT_9d218390_f00456e5=yes CC_OUTPUT_9d218390_65ad290d=yes CC_OUTPUT_9d218390_f2776b26=yes CC_OUTPUT_9d218390_b2657cc3=yes CC_OUTPUT_9d218390_380987f7=yes CC_OUTPUT_9d218390_160933ec=yes CC_OUTPUT_9d218390_fb62803b=yes _OBJC_CCVERSION_9d218390=FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 366581) (based on LLVM 8.0.1) Target: armv7-unknown-freebsd12.1-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _OBJC_ALTCCVERSION_9d218390=none ARCH=armv7 OPSYS=FreeBSD _OSRELEASE=12.1-RELEASE-p6 OSREL=12.1 OSVERSION=1201000 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv2 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> avogadrolibs-1.93.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.14.6.txz [121armv7-quarterly-job-05] Installing pkg-1.14.6... [121armv7-quarterly-job-05] Extracting pkg-1.14.6: .......... done ===> avogadrolibs-1.93.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of avogadrolibs-1.93.0 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by avogadrolibs-1.93.0 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by avogadrolibs-1.93.0 for building => SHA256 Checksum OK for OpenChemistry-avogadrolibs-1.93.0_GH0.tar.gz. <snip> [31/475] : && /nxb-bin/usr/bin/c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong utilities/encodefile/CMakeFiles/encodefile.dir/encodefile.cxx.o -o bin/encodefile && : [32/475] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/linestrip_fs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/linestrip_fs.h linestrip_fs [33/475] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/spheres_vs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/spheres_vs.h spheres_vs [34/475] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/linestrip_vs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/linestrip_vs.h linestrip_vs [35/475] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/mesh_fs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/mesh_fs.h mesh_fs [36/475] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/mesh_vs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/mesh_vs.h mesh_vs [37/475] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/spheres_fs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/spheres_fs.h spheres_fs [38/475] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/sphere_ao_depth_vs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/sphere_ao_depth_vs.h sphere_ao_depth_vs [39/475] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/sphere_ao_depth_fs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/sphere_ao_depth_fs.h sphere_ao_depth_fs [40/475] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/sphere_ao_bake_vs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/sphere_ao_bake_vs.h sphere_ao_bake_vs [41/475] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/sphere_ao_bake_fs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/sphere_ao_bake_fs.h sphere_ao_bake_fs [42/475] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/sphere_ao_render_vs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/sphere_ao_render_vs.h sphere_ao_render_vs [43/475] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/sphere_ao_render_fs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/sphere_ao_render_fs.h sphere_ao_render_fs [44/475] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/textlabelbase_fs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/textlabelbase_fs.h textlabelbase_fs [45/475] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/textlabelbase_vs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/textlabelbase_vs.h textlabelbase_vs [46/475] /nxb-bin/usr/bin/c++ -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT utilities/resdata/CMakeFiles/resdataparse.dir/resdataparse.cxx.o -MF utilities/resdata/CMakeFiles/resdataparse.dir/resdataparse.cxx.o.d -o utilities/resdata/CMakeFiles/resdataparse.dir/resdataparse.cxx.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/utilities/resdata/resdataparse.cxx [47/475] : && /nxb-bin/usr/bin/c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong utilities/resdata/CMakeFiles/resdataparse.dir/resdataparse.cxx.o -o bin/resdataparse && : [48/475] /nxb-bin/usr/bin/cc -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fPIC -MD -MT thirdparty/struct/CMakeFiles/struct.dir/struct.c.o -MF thirdparty/struct/CMakeFiles/struct.dir/struct.c.o.d -o thirdparty/struct/CMakeFiles/struct.dir/struct.c.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty/struct/struct.c [49/475] /nxb-bin/usr/bin/cc -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fPIC -MD -MT thirdparty/struct/CMakeFiles/struct.dir/struct_endian.c.o -MF thirdparty/struct/CMakeFiles/struct.dir/struct_endian.c.o.d -o thirdparty/struct/CMakeFiles/struct.dir/struct_endian.c.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty/struct/struct_endian.c [50/475] : && /usr/local/bin/cmake -E rm -f thirdparty/struct/libstruct.a && /nxb-bin/usr/bin/ar qc thirdparty/struct/libstruct.a thirdparty/struct/CMakeFiles/struct.dir/struct.c.o thirdparty/struct/CMakeFiles/struct.dir/struct_endian.c.o && /nxb-bin/usr/bin/ranlib thirdparty/struct/libstruct.a && : [51/475] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/cylinders_fs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/cylinders_fs.h cylinders_fs [52/475] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/arrow_vs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/arrow_vs.h arrow_vs [53/475] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/cylinders_vs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/cylinders_vs.h cylinders_vs [54/475] /nxb-bin/usr/bin/c++ -DAvogadroRendering_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/shader.cpp.o -MF avogadro/rendering/CMakeFiles/AvogadroRendering.dir/shader.cpp.o.d -o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/shader.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/shader.cpp [55/475] /nxb-bin/usr/bin/c++ -DAvogadroRendering_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/spheregeometry.cpp.o -MF avogadro/rendering/CMakeFiles/AvogadroRendering.dir/spheregeometry.cpp.o.d -o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/spheregeometry.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/spheregeometry.cpp [56/475] /nxb-bin/usr/bin/c++ -DAvogadroRendering_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabel2d.cpp.o -MF avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabel2d.cpp.o.d -o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabel2d.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/textlabel2d.cpp [57/475] /nxb-bin/usr/bin/c++ -DAvogadroRendering_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabelbase.cpp.o -MF avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabelbase.cpp.o.d -o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabelbase.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/textlabelbase.cpp [58/475] /nxb-bin/usr/bin/c++ -DAvogadroRendering_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textproperties.cpp.o -MF avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textproperties.cpp.o.d -o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textproperties.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/textproperties.cpp [59/475] /nxb-bin/usr/bin/c++ -DAvogadroRendering_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textrenderstrategy.cpp.o -MF avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textrenderstrategy.cpp.o.d -o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textrenderstrategy.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/textrenderstrategy.cpp [60/475] /nxb-bin/usr/bin/c++ -DAvogadroRendering_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/texture2d.cpp.o -MF avogadro/rendering/CMakeFiles/AvogadroRendering.dir/texture2d.cpp.o.d -o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/texture2d.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/texture2d.cpp [61/475] /nxb-bin/usr/bin/c++ -DAvogadroRendering_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/transformnode.cpp.o -MF avogadro/rendering/CMakeFiles/AvogadroRendering.dir/transformnode.cpp.o.d -o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/transformnode.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/transformnode.cpp [62/475] /nxb-bin/usr/bin/c++ -DAvogadroRendering_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/visitor.cpp.o -MF avogadro/rendering/CMakeFiles/AvogadroRendering.dir/visitor.cpp.o.d -o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/visitor.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/visitor.cpp [63/475] /nxb-bin/usr/bin/c++ -DAvogadroRendering_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/volumegeometry.cpp.o -MF avogadro/rendering/CMakeFiles/AvogadroRendering.dir/volumegeometry.cpp.o.d -o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/volumegeometry.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/volumegeometry.cpp [64/475] /nxb-bin/usr/bin/c++ -DAvogadroRendering_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/vrmlvisitor.cpp.o -MF avogadro/rendering/CMakeFiles/AvogadroRendering.dir/vrmlvisitor.cpp.o.d -o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/vrmlvisitor.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/vrmlvisitor.cpp [65/475] /nxb-bin/usr/bin/c++ -DAvogadroRendering_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/ambientocclusionspheregeometry.cpp.o -MF avogadro/rendering/CMakeFiles/AvogadroRendering.dir/ambientocclusionspheregeometry.cpp.o.d -o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/ambientocclusionspheregeometry.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/ambientocclusionspheregeometry.cpp [66/475] /nxb-bin/usr/bin/c++ -DAvogadroRendering_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/arrowgeometry.cpp.o -MF avogadro/rendering/CMakeFiles/AvogadroRendering.dir/arrowgeometry.cpp.o.d -o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/arrowgeometry.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/arrowgeometry.cpp In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/arrowgeometry.cpp:17: /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/arrowgeometry.h:54:8: warning: 'render' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] void render(const Camera& camera); ^ /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/drawable.h:94:16: note: overridden virtual function is here virtual void render(const Camera& camera); ^ In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/arrowgeometry.cpp:17: /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/arrowgeometry.h:59:8: warning: 'clear' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] void clear(); ^ /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/drawable.h:124:16: note: overridden virtual function is here virtual void clear(); ^ 2 warnings generated. [67/475] /nxb-bin/usr/bin/c++ -DAvogadroRendering_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/bufferobject.cpp.o -MF avogadro/rendering/CMakeFiles/AvogadroRendering.dir/bufferobject.cpp.o.d -o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/bufferobject.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/bufferobject.cpp [68/475] /nxb-bin/usr/bin/c++ -DAvogadroRendering_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/camera.cpp.o -MF avogadro/rendering/CMakeFiles/AvogadroRendering.dir/camera.cpp.o.d -o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/camera.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/camera.cpp [69/475] /nxb-bin/usr/bin/c++ -DAvogadroRendering_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/cylindergeometry.cpp.o -MF avogadro/rendering/CMakeFiles/AvogadroRendering.dir/cylindergeometry.cpp.o.d -o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/cylindergeometry.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/rendering/cylindergeometry.cpp [70/475] /nxb-bin/usr/bin/c++ -DAvogadroRendering_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem 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-Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work /avogadrolibs-1.93.0/avogadro/io/cjsonformat.cpp [92/475] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avoga drolibs-1.93.0/avogadro/io/cmlformat.cpp [93/475] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avoga drolibs-1.93.0/avogadro/io/dcdformat.cpp [94/475] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/fileformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/fileformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/fileformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/av ogadrolibs-1.93.0/avogadro/io/fileformat.cpp [95/475] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o -c /wrkdirs/usr/ports/science /avogadrolibs/work/avogadrolibs-1.93.0/avogadro/io/fileformatmanager.cpp In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/io/fileformatmanager.cpp:29: /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/io/vaspformat.h:90:8: warning: 'read' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] bool read(std::istream& inStream, Core::Molecule& mol); ^ /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/io/fileformat.h:126:16: note: overridden virtual function is here virtual bool read(std::istream& in, Core::Molecule& molecule) = 0; ^ In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/io/fileformatmanager.cpp:29: /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/io/vaspformat.h:91:8: warning: 'write' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] bool write(std::ostream& outStream, const Core::Molecule& mol); ^ /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/io/fileformat.h:134:16: note: overridden virtual function is here virtual bool write(std::ostream& out, const Core::Molecule& molecule) = 0; ^ 2 warnings generated. [96/475] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolib s/work/avogadrolibs-1.93.0/avogadro/io/gromacsformat.cpp [97/475] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avoga drolibs-1.93.0/avogadro/io/mdlformat.cpp [98/475] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/av ogadrolibs-1.93.0/avogadro/io/vaspformat.cpp In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/io/vaspformat.cpp:17: /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/io/vaspformat.h:90:8: warning: 'read' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] bool read(std::istream& inStream, Core::Molecule& mol); ^ /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/io/fileformat.h:126:16: note: overridden virtual function is here virtual bool read(std::istream& in, Core::Molecule& molecule) = 0; ^ In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/io/vaspformat.cpp:17: /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/io/vaspformat.h:91:8: warning: 'write' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] bool write(std::ostream& outStream, const Core::Molecule& mol); ^ /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/io/fileformat.h:134:16: note: overridden virtual function is here virtual bool write(std::ostream& out, const Core::Molecule& molecule) = 0; ^ 2 warnings generated. [99/475] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avoga 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/wrkdirs/usr/ports/science/avogadrolibs/work/avog adrolibs-1.93.0/avogadro/io/xyzformat.cpp [101/475] /nxb-bin/usr/bin/c++ -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/command/CMakeFiles/avocjsontocml.dir/cjsontocml.cpp.o -MF avogadro/command/CMakeFiles/avocjsontocml.dir/cjsontocml.cpp.o.d -o avogadro/command/CMakeFiles/avocjsontocml.dir/cjsontocml.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/command/cjsontocml.cpp [102/475] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/trrformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/trrformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/trrformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avog adrolibs-1.93.0/avogadro/io/trrformat.cpp [103/475] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/ work/avogadrolibs-1.93.0/avogadro/io/lammpsformat.cpp [104/475] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/a vogadrolibs-1.93.0/avogadro/io/mmtfformat.cpp [105/475] : && /nxb-bin/usr/bin/c++ -fPIC -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong -shared -Wl,-soname,libAvogadroIO.so.1 -o lib/libAvogadroIO.so.1.93.0 avogadro/io/CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/fileformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/trrformat.cpp.o avogadro/io/CMakeFiles/A vogadroIO.dir/lammpsformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/avogadrolibs/work/.build/lib: lib/libAvogadroCore.so.1.93.0 thirdparty/struct/libstruct.a && : [106/475] /usr/local/bin/cmake -E cmake_symlink_library lib/libAvogadroIO.so.1.93.0 lib/libAvogadroIO.so.1 lib/libAvogadroIO.so && : [107/475] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtgui && /usr/local/bin/cmake -E cmake_autogen /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/AutogenInfo.json Release [108/475] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtgui && /usr/local/lib/qt5/bin/uic -o /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtgui/ui_customelementdialog.h /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/qtgui/customelementdialog.ui [109/475] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtgui && /usr/local/lib/qt5/bin/rcc --name qtgui --output /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtgui/qrc_qtgui.cpp /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/qtgui/qtgui.qrc [110/475] /nxb-bin/usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -Iavogadro/qtgui/AvogadroQtGui_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/mocs_compilation.cpp.o - MF avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/mocs_compilation.cpp.o.d -o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/mocs_compilation.cpp.o -c avogadro/qtgui/AvogadroQtGui_autogen/mocs_compilation.cpp [111/475] /nxb-bin/usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -Iavogadro/qtgui/AvogadroQtGui_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io 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-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementdetail_p.cpp.o -MF avogadro/qtgui/CMake Files/AvogadroQtGui.dir/elementdetail_p.cpp.o.d -o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementdetail_p.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/qtgui/elementdetail_p.cpp /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/qtgui/elementdetail_p.cpp:85:24: warning: 'width' is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] int pixelWidth = fm2.width(symbol); ^ /usr/local/include/qt5/QtGui/qfontmetrics.h:105:5: note: 'width' has been explicitly marked deprecated here QT_DEPRECATED_X("Use QFontMetrics::horizontalAdvance") ^ /usr/local/include/qt5/QtCore/qglobal.h:294:33: note: expanded from macro 'QT_DEPRECATED_X' # define QT_DEPRECATED_X(text) Q_DECL_DEPRECATED_X(text) ^ /usr/local/include/qt5/QtCore/qcompilerdetection.h:676:55: note: expanded from macro 'Q_DECL_DEPRECATED_X' # define Q_DECL_DEPRECATED_X(text) __attribute__ ((__deprecated__(text))) ^ 1 warning generated. [115/475] /nxb-bin/usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -Iavogadro/qtgui/AvogadroQtGui_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementitem_p.cpp.o -MF avogadro/qtgui/CMakeFi 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vogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/fileformatdialog.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/generichighlighter.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/hydrogentools.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/interfacescript.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/interfacewidget.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/meshgenerator.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/molecule.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/moleculemodel.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/multiviewwidget.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/periodictablescene_p.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/periodictableview.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/pythonscript.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/rwmolecule.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/sceneplugin.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/scenepluginmodel.cpp.o avogadro/qtgui/CMakeF 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/wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/AutogenInfo.json Release [142/475] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/plugindownloader && /usr/local/lib/qt5/bin/uic -o /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/plugindownloader/ui_downloaderwidget.h /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/qtplugins/plugindownloader/downloaderwidget.ui [143/475] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/plugindownloader -isystem /usr/local/include/eigen3 -isystem 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avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/qtplugins/plugindownloader/plugindownloader.cpp [146/475] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/plugindownloader -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty -isystem /usr/local/include/qt5/QtNetwork -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -i system /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o -MF avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o.d -o avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/avogadro/qtplugins/plugindownloader/zipextracter.cpp [147/475] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/plugindownloader -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.93.0/thirdparty -isystem /usr/local/include/qt5/QtNetwork -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -i system /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o -MF avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o.d -o avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o -c avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp [148/475] : && /usr/local/bin/cmake -E rm -f lib/avogadro2/staticplugins/PluginDownloader.a && /nxb-bin/usr/bin/ar qc lib/avogadro2/staticplugins/PluginDownloader.a avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/PluginDownloader_autogen/mocs_compilation.cpp.o avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o && /nxb-bin/usr/bin/ranlib lib/avogadro2/staticplugins/PluginDownloader.a && : [149/475] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/overlayaxes && /usr/local/bin/cmake -E cmake_autogen /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/AutogenInfo.json Release [150/475] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/vanderwaalsao && /usr/local/bin/cmake -E cmake_autogen /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/AutogenInfo.json Release FAILED: avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/mocs_compilation.cpp cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/vanderwaalsao && /usr/local/bin/cmake -E cmake_autogen /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/AutogenInfo.json Release Fatal error 'thread 0xf38ef800 exits with resources held!' at line 321 in file /usr/local/poudriere/jails/121armv7/usr/src/lib/libthr/thread/thr_exit.c (errno = 2) qemu: uncaught target signal 6 (Abort trap) - core dumped ninja: build stopped: subcommand failed. *** Error code 1 Stop. make: stopped in /usr/ports/science/avogadrolibs
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