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Date:      Sun, 22 Oct 2017 02:15:00 GMT
From:      pkg-fallout@FreeBSD.org
To:        scottcheloha@gmail.com
Cc:        pkg-fallout@FreeBSD.org
Subject:   [package - head-amd64-default][biology/bedtools] Failed for bedtools-2.25.0 in build
Message-ID:  <201710220215.v9M2F0KH002000@beefy12.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     scottcheloha@gmail.com
Last committer: linimon@FreeBSD.org
Ident:          $FreeBSD: head/biology/bedtools/Makefile 441847 2017-05-27 15:07:11Z linimon $
Log URL:        http://beefy12.nyi.freebsd.org/data/head-amd64-default/p452618_s324836/logs/bedtools-2.25.0.log
Build URL:      http://beefy12.nyi.freebsd.org/build.html?mastername=head-amd64-default&build=p452618_s324836
Log:

====>> Building biology/bedtools
build started at Sun Oct 22 02:13:27 UTC 2017
port directory: /usr/ports/biology/bedtools
building for: FreeBSD head-amd64-default-job-03 12.0-CURRENT FreeBSD 12.0-CURRENT 1200051 amd64
maintained by: scottcheloha@gmail.com
Makefile ident:      $FreeBSD: head/biology/bedtools/Makefile 441847 2017-05-27 15:07:11Z linimon $
Poudriere version: 3.1.21
Host OSVERSION: 1200050
Jail OSVERSION: 1200051
Job Id: 03




!!! Jail is newer than host. (Jail: 1200051, Host: 1200050) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
OSVERSION=1200051
UNAME_v=FreeBSD 12.0-CURRENT 1200051
UNAME_r=12.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/head-amd64-default/ref
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bedtools-2.25.0
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p/pool
MASTERNAME=head-amd64-default
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.21
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bedtools/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bedtools/work  HOME=/wrkdirs/usr/ports/biology/bedtools/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/bedtools/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bedtools/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bedtools/work  HOME=/wrkdirs/usr/ports/biology/bedtools/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/bedtools/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 -pipe  -fstack-protector -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS=" -fstack-protector" LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PYTHON_INCLUDEDIR=include/python2.7
PYTHON_LIBDIR=lib/python2.7
PYTHON_PLATFORM=freebsd12
PYTHON_PYOEXTENSION=pyo
PYTHON_SITELIBDIR=lib/python2.7/site-packages
PYTHON_SUFFIX=27
PYTHON_VER=2.7
PYTHON_VERSION=python2.7
PYTHON2=""
PYTHON3="@comment
"
OSREL=12.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/bedtools"
EXAMPLESDIR="share/examples/bedtools"
DATADIR="share/bedtools"
WWWDIR="www/bedtools"
ETCDIR="etc/bedtools"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bedtools
DOCSDIR=/usr/local/share/doc/bedtools
EXAMPLESDIR=/usr/local/share/examples/bedtools
WWWDIR=/usr/local/www/bedtools
ETCDIR=/usr/local/etc/bedtools
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
ARCH=amd64
CONFIGURE_MAX_CMD_LEN=262144
HAVE_COMPAT_IA32_KERN=YES
OPSYS=FreeBSD
OSREL=12.0
OSVERSION=1200051
PYTHONBASE=/usr/local
UID=0
_JAVA_OS_LIST_REGEXP=native|linux
_JAVA_VENDOR_LIST_REGEXP=openjdk|oracle|sun
_JAVA_VERSION_LIST_REGEXP=1.6|1.7|1.8|1.9|1.6\+|1.7\+|1.8\+|1.9\+
_OSRELEASE=12.0-CURRENT
#### Misc Poudriere ####
GID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  33554432
stack size              (kbytes, -s)  524288
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   bedtools-2.25.0 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.1.txz
[head-amd64-default-job-03] Installing pkg-1.10.1...
[head-amd64-default-job-03] Extracting pkg-1.10.1: .......... done
===>   bedtools-2.25.0 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of bedtools-2.25.0
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by bedtools-2.25.0 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by bedtools-2.25.0 for building
=> SHA256 Checksum OK for arq5x-bedtools2-v2.25.0_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by bedtools-2.25.0 for building
===>  Extracting for bedtools-2.25.0
=> SHA256 Checksum OK for arq5x-bedtools2-v2.25.0_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for bedtools-2.25.0
===>  Applying FreeBSD patches for bedtools-2.25.0
===========================================================================
=======================<phase: build-depends  >============================
===>   bedtools-2.25.0 depends on executable: gmake - not found
===>   Installing existing package /packages/All/gmake-4.2.1_1.txz
[head-amd64-default-job-03] Installing gmake-4.2.1_1...
[head-amd64-default-job-03] `-- Installing gettext-runtime-0.19.8.1_1...
[head-amd64-default-job-03] |   `-- Installing indexinfo-0.2.6...
[head-amd64-default-job-03] |   `-- Extracting indexinfo-0.2.6: .... done
[head-amd64-default-job-03] `-- Extracting gettext-runtime-0.19.8.1_1: .......... done
[head-amd64-default-job-03] Extracting gmake-4.2.1_1: .......... done
===>   bedtools-2.25.0 depends on executable: gmake - found
<snip>
In file included from ../../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14:
In file included from ../../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14:
In file included from ../../../utils//BamTools/include/api/BamReader.h:14:
In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15:
./../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion]
const char GZIP_ID2   = 139;
           ~~~~~~~~     ^~~
./../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion]
const char OS_UNKNOWN = 255;
           ~~~~~~~~~~   ^~~
3 warnings generated.
  * compiling BedPlusInterval.cpp
In file included from BedPlusInterval.cpp:2:
In file included from ../../../utils//FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h:11:
In file included from ../../../utils//FileRecordTools/FileReaders/FileReader.h:10:
In file included from ../../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14:
In file included from ../../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14:
In file included from ../../../utils//BamTools/include/api/BamReader.h:14:
In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15:
./../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion]
const char GZIP_ID2   = 139;
           ~~~~~~~~     ^~~
./../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion]
const char OS_UNKNOWN = 255;
           ~~~~~~~~~~   ^~~
2 warnings generated.
  * compiling Bed12Interval.cpp
In file included from Bed12Interval.cpp:2:
In file included from ../../../utils//FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h:11:
In file included from ../../../utils//FileRecordTools/FileReaders/FileReader.h:10:
In file included from ../../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14:
In file included from ../../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14:
In file included from ../../../utils//BamTools/include/api/BamReader.h:14:
In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15:
./../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion]
const char GZIP_ID2   = 139;
           ~~~~~~~~     ^~~
./../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion]
const char OS_UNKNOWN = 255;
           ~~~~~~~~~~   ^~~
2 warnings generated.
  * compiling BamRecord.cpp
In file included from BamRecord.cpp:8:
In file included from ./BamRecord.h:14:
In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15:
./../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion]
const char GZIP_ID2   = 139;
           ~~~~~~~~     ^~~
./../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion]
const char OS_UNKNOWN = 255;
           ~~~~~~~~~~   ^~~
2 warnings generated.
  * compiling GffRecord.cpp
In file included from GffRecord.cpp:2:
In file included from ../../../utils//FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h:11:
In file included from ../../../utils//FileRecordTools/FileReaders/FileReader.h:10:
In file included from ../../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14:
In file included from ../../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14:
In file included from ../../../utils//BamTools/include/api/BamReader.h:14:
In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15:
./../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion]
const char GZIP_ID2   = 139;
           ~~~~~~~~     ^~~
./../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion]
const char OS_UNKNOWN = 255;
           ~~~~~~~~~~   ^~~
2 warnings generated.
  * compiling GffPlusRecord.cpp
In file included from GffPlusRecord.cpp:2:
In file included from ../../../utils//FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h:11:
In file included from ../../../utils//FileRecordTools/FileReaders/FileReader.h:10:
In file included from ../../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14:
In file included from ../../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14:
In file included from ../../../utils//BamTools/include/api/BamReader.h:14:
In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15:
./../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion]
const char GZIP_ID2   = 139;
           ~~~~~~~~     ^~~
./../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion]
const char OS_UNKNOWN = 255;
           ~~~~~~~~~~   ^~~
2 warnings generated.
  * compiling VcfRecord.cpp
In file included from VcfRecord.cpp:9:
In file included from ../../../utils//FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h:11:
In file included from ../../../utils//FileRecordTools/FileReaders/FileReader.h:10:
In file included from ../../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14:
In file included from ../../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14:
In file included from ../../../utils//BamTools/include/api/BamReader.h:14:
In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15:
./../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion]
const char GZIP_ID2   = 139;
           ~~~~~~~~     ^~~
./../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion]
const char OS_UNKNOWN = 255;
           ~~~~~~~~~~   ^~~
2 warnings generated.
  * compiling NoPosPlusRecord.cpp
In file included from NoPosPlusRecord.cpp:2:
In file included from ../../../utils//FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h:11:
In file included from ../../../utils//FileRecordTools/FileReaders/FileReader.h:10:
In file included from ../../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14:
In file included from ../../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14:
In file included from ../../../utils//BamTools/include/api/BamReader.h:14:
In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15:
./../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion]
const char GZIP_ID2   = 139;
           ~~~~~~~~     ^~~
./../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion]
const char OS_UNKNOWN = 255;
           ~~~~~~~~~~   ^~~
2 warnings generated.
  * compiling BlockMgr.cpp
In file included from BlockMgr.cpp:9:
In file included from ./RecordMgr.h:21:
In file included from ./BamRecord.h:14:
In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15:
./../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion]
const char GZIP_ID2   = 139;
           ~~~~~~~~     ^~~
./../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion]
const char OS_UNKNOWN = 255;
           ~~~~~~~~~~   ^~~
2 warnings generated.
  * compiling StrandQueue.cpp
In file included from StrandQueue.cpp:8:
In file included from ./StrandQueue.h:11:
/usr/include/c++/v1/queue:401:5: error: static_assert failed ""
    static_assert((is_same<_Tp, value_type>::value), "" );
    ^             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/v1/__config:783:36: note: expanded from macro 'static_assert'
#   define static_assert(__b, __m) _Static_assert(__b, __m)
                                   ^              ~~~
StrandQueue.cpp:13:26: note: in instantiation of template class 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>' requested here
                queueType *queue = new queueType();
                                       ^
StrandQueue.cpp:32:47: error: no member named 'top' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
        return const_cast<Record *>(_queues[minIdx]->top());
                                    ~~~~~~~~~~~~~~~  ^
StrandQueue.cpp:38:19: error: no member named 'pop' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
        _queues[minIdx]->pop();
        ~~~~~~~~~~~~~~~  ^
StrandQueue.cpp:45:19: error: no member named 'empty' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
                if (_queues[0]->empty()) return NULL;
                    ~~~~~~~~~~  ^
StrandQueue.cpp:46:24: error: no member named 'top' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
                record = _queues[0]->top();
                         ~~~~~~~~~~  ^
StrandQueue.cpp:49:19: error: no member named 'empty' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
                if (_queues[1]->empty()) return NULL;
                    ~~~~~~~~~~  ^
StrandQueue.cpp:51:24: error: no member named 'top' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
                record = _queues[1]->top();
                         ~~~~~~~~~~  ^
StrandQueue.cpp:54:19: error: no member named 'empty' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
                if (_queues[0]->empty()) return NULL;
                    ~~~~~~~~~~  ^
StrandQueue.cpp:55:24: error: no member named 'top' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
                record = _queues[2]->top();
                         ~~~~~~~~~~  ^
StrandQueue.cpp:66:19: error: no member named 'empty' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
                if (_queues[0]->empty()) return;
                    ~~~~~~~~~~  ^
StrandQueue.cpp:67:15: error: no member named 'pop' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
                _queues[0]->pop();
                ~~~~~~~~~~  ^
StrandQueue.cpp:70:19: error: no member named 'empty' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
                if (_queues[1]->empty()) return;
                    ~~~~~~~~~~  ^
StrandQueue.cpp:71:15: error: no member named 'pop' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
                _queues[1]->pop();
                ~~~~~~~~~~  ^
StrandQueue.cpp:74:19: error: no member named 'empty' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
                if (_queues[2]->empty()) return;
                    ~~~~~~~~~~  ^
StrandQueue.cpp:75:15: error: no member named 'pop' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
                _queues[2]->pop();
                ~~~~~~~~~~  ^
StrandQueue.cpp:85:15: error: no member named 'push' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
                _queues[0]->push(record);
                ~~~~~~~~~~  ^
StrandQueue.cpp:88:15: error: no member named 'push' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
                _queues[1]->push(record);
                ~~~~~~~~~~  ^
StrandQueue.cpp:91:15: error: no member named 'push' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
                _queues[2]->push(record);
                ~~~~~~~~~~  ^
StrandQueue.cpp:101:26: error: no member named 'size' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
                sumSize += _queues[i]->size();
                           ~~~~~~~~~~  ^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
gmake[3]: *** [Makefile:39: ../../../../obj//StrandQueue.o] Error 1
gmake[2]: *** [Makefile:45: Records] Error 2
gmake[1]: *** [Makefile:174: src/utils/FileRecordTools] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/bedtools/work/bedtools2-2.25.0'
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/bedtools



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