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Date:      Wed, 6 Feb 2019 07:53:03 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - 120armv7-quarterly][math/py-gau2grid] Failed for py36-gau2grid-1.3.0_1 in build
Message-ID:  <201902060753.x167r3pB090505@beefy13.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Last committer: gerald@FreeBSD.org
Ident:          $FreeBSD: branches/2019Q1/math/py-gau2grid/Makefile 487272 2018-12-12 01:35:33Z gerald $
Log URL:        http://beefy13.nyi.freebsd.org/data/120armv7-quarterly/492187/logs/py36-gau2grid-1.3.0_1.log
Build URL:      http://beefy13.nyi.freebsd.org/build.html?mastername=120armv7-quarterly&build=492187
Log:

=>> Building math/py-gau2grid
build started at Wed Feb  6 07:52:23 UTC 2019
port directory: /usr/ports/math/py-gau2grid
package name: py36-gau2grid-1.3.0_1
building for: FreeBSD 120armv7-quarterly-job-13 12.0-RELEASE-p2 FreeBSD 12.0-RELEASE-p2 1200086 arm
maintained by: yuri@FreeBSD.org
Makefile ident:      $FreeBSD: branches/2019Q1/math/py-gau2grid/Makefile 487272 2018-12-12 01:35:33Z gerald $
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Jail OSVERSION: 1200086
Job Id: 13

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=======================<phase: check-sanity   >============================
===>  License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   py36-gau2grid-1.3.0_1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.5_5.txz
[120armv7-quarterly-job-13] Installing pkg-1.10.5_5...
[120armv7-quarterly-job-13] Extracting pkg-1.10.5_5: .......... done
===>   py36-gau2grid-1.3.0_1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py36-gau2grid-1.3.0_1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py36-gau2grid-1.3.0_1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py36-gau2grid-1.3.0_1 for building
=> SHA256 Checksum OK for dgasmith-gau2grid-v1.3.0_GH0.tar.gz.
=> SHA256 Checksum OK for 0deace28eaad3359a595e384daf7bb9dd157c0d6.patch.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
<snip>
********************************* WARNING *********************************

FreeBSD does not, and can not warrant that the certification authorities
whose certificates are included in this package have in any way been
audited for trustworthiness or RFC 3647 compliance.

Assessment and verification of trust is the complete responsibility of the
system administrator.

*********************************** NOTE **********************************

This package installs symlinks to support root certificates discovery by
default for software that uses OpenSSL.

This enables SSL Certificate Verification by client software without manual
intervention.

If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.

  * /etc/ssl/cert.pem
  * /usr/local/etc/ssl/cert.pem
  * /usr/local/openssl/cert.pem

***************************************************************************
===>   py36-gau2grid-1.3.0_1 depends on executable: cmake - found
===>   Returning to build of py36-gau2grid-1.3.0_1
===>   py36-gau2grid-1.3.0_1 depends on package: py36-setuptools>0 - found
===>   py36-gau2grid-1.3.0_1 depends on file: /usr/local/bin/python3.6 - found
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for py36-gau2grid-1.3.0_1
running config
===========================================================================
=======================<phase: build          >============================
===>  Building for py36-gau2grid-1.3.0_1
running build
running build_py
creating build
creating build/lib.freebsd-12.0-RELEASE-p2-arm-3.6
creating build/lib.freebsd-12.0-RELEASE-p2-arm-3.6/gau2grid
copying gau2grid/codegen.py -> build/lib.freebsd-12.0-RELEASE-p2-arm-3.6/gau2grid
copying gau2grid/order.py -> build/lib.freebsd-12.0-RELEASE-p2-arm-3.6/gau2grid
copying gau2grid/python_reference.py -> build/lib.freebsd-12.0-RELEASE-p2-arm-3.6/gau2grid
copying gau2grid/utility.py -> build/lib.freebsd-12.0-RELEASE-p2-arm-3.6/gau2grid
copying gau2grid/__init__.py -> build/lib.freebsd-12.0-RELEASE-p2-arm-3.6/gau2grid
copying gau2grid/c_util_generator.py -> build/lib.freebsd-12.0-RELEASE-p2-arm-3.6/gau2grid
copying gau2grid/c_wrapper.py -> build/lib.freebsd-12.0-RELEASE-p2-arm-3.6/gau2grid
copying gau2grid/RSH.py -> build/lib.freebsd-12.0-RELEASE-p2-arm-3.6/gau2grid
copying gau2grid/np_generator.py -> build/lib.freebsd-12.0-RELEASE-p2-arm-3.6/gau2grid
copying gau2grid/extras.py -> build/lib.freebsd-12.0-RELEASE-p2-arm-3.6/gau2grid
copying gau2grid/c_generator.py -> build/lib.freebsd-12.0-RELEASE-p2-arm-3.6/gau2grid
copying gau2grid/_version.py -> build/lib.freebsd-12.0-RELEASE-p2-arm-3.6/gau2grid
copying gau2grid/c_pragma.py -> build/lib.freebsd-12.0-RELEASE-p2-arm-3.6/gau2grid
copying gau2grid/docs_generator.py -> build/lib.freebsd-12.0-RELEASE-p2-arm-3.6/gau2grid
creating build/lib.freebsd-12.0-RELEASE-p2-arm-3.6/gau2grid/tests
copying gau2grid/tests/ref_basis.py -> build/lib.freebsd-12.0-RELEASE-p2-arm-3.6/gau2grid/tests
copying gau2grid/tests/__init__.py -> build/lib.freebsd-12.0-RELEASE-p2-arm-3.6/gau2grid/tests
copying gau2grid/tests/test_c_generator.py -> build/lib.freebsd-12.0-RELEASE-p2-arm-3.6/gau2grid/tests
copying gau2grid/tests/test_np_generator.py -> build/lib.freebsd-12.0-RELEASE-p2-arm-3.6/gau2grid/tests
copying gau2grid/tests/test_helper.py -> build/lib.freebsd-12.0-RELEASE-p2-arm-3.6/gau2grid/tests
copying gau2grid/tests/test_order.py -> build/lib.freebsd-12.0-RELEASE-p2-arm-3.6/gau2grid/tests
copying gau2grid/tests/test_rsh.py -> build/lib.freebsd-12.0-RELEASE-p2-arm-3.6/gau2grid/tests
copying gau2grid/tests/test_c_code.py -> build/lib.freebsd-12.0-RELEASE-p2-arm-3.6/gau2grid/tests
running egg_info
creating gau2grid.egg-info
writing gau2grid.egg-info/PKG-INFO
writing dependency_links to gau2grid.egg-info/dependency_links.txt
writing requirements to gau2grid.egg-info/requires.txt
writing top-level names to gau2grid.egg-info/top_level.txt
writing manifest file 'gau2grid.egg-info/SOURCES.txt'
reading manifest file 'gau2grid.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.npz' under directory 'gau2grid'
writing manifest file 'gau2grid.egg-info/SOURCES.txt'
creating build/lib.freebsd-12.0-RELEASE-p2-arm-3.6/gau2grid/data
copying gau2grid/data/rsh_coeffs.pkl -> build/lib.freebsd-12.0-RELEASE-p2-arm-3.6/gau2grid/data
UPDATING build/lib.freebsd-12.0-RELEASE-p2-arm-3.6/gau2grid/_version.py
set build/lib.freebsd-12.0-RELEASE-p2-arm-3.6/gau2grid/_version.py to '0+unknown'
running build_ext
-- The C compiler identification is Clang 6.0.1
-- Check for working C compiler: /nxb-bin/usr/bin/cc
-- Check for working C compiler: /nxb-bin/usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Setting option MAX_AM: 6
-- Setting option SPHERICAL_ORDER: gaussian
-- Setting option CARTESIAN_ORDER: row
-- Setting option MAX_AM: 6
-- Setting option CMAKE_BUILD_TYPE: Release
-- Setting option ENABLE_XHOST: ON
-- Performing Test CMAKE_C_FLAGS [-xHost] - Failed
-- Performing Test CMAKE_C_FLAGS [-march=native] - Failed
CMake Warning at cmake/psi4OptionsTools.cmake:94 (message):
  Option unfulfilled as none of -xHost;-march=native valid
Call Stack (most recent call first):
  cmake/psi4OptionsTools.cmake:137 (add_C_or_CXX_flags)
  cmake/psi4OptionsTools.cmake:168 (add_C_flags)
  cmake/psi4OptionsTools.cmake:186 (add_flags)
  CMakeLists.txt:22 (option_with_flags)


-- Setting option BUILD_FPIC: ON
-- Setting option BUILD_SHARED_LIBS: ON
-- Setting option ENABLE_GENERIC: OFF
-- Setting (unspecified) option CMAKE_INSTALL_LIBDIR: lib
-- Setting (unspecified) option PYMOD_INSTALL_LIBDIR: /
-- Setting (unspecified) option INSTALL_PYMOD: OFF
-- gau2grid install: /usr/local/gau2grid
-- Found PythonInterp: /usr/local/bin/python3.6 (found suitable version "3.6.7", minimum required is "2.7") 
-- Found PythonLibs: /usr/local/lib/libpython3.6m.so
-- Found Python 3.6: /usr/local/bin/python3.6 (found version 3.6.7)
-- Configuring done
-- Generating done
-- Build files have been written to: /wrkdirs/usr/ports/math/py-gau2grid/work-py36/gau2grid-1.3.0/build/temp.freebsd-12.0-RELEASE-p2-arm-3.6
[ 12%] Generating gau2grid.h, gau2grid_orbital.c, gau2grid_phi.c, gau2grid_deriv1.c, gau2grid_deriv2.c, gau2grid_spherical.c, gau2grid_helper.c
Traceback (most recent call last):
  File "/usr/local/lib/python3.6/site-packages/numpy/core/__init__.py", line 16, in <module>
    from . import multiarray
ImportError: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv@GCC_3.5"

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "/wrkdirs/usr/ports/math/py-gau2grid/work-py36/gau2grid-1.3.0/gau2grid/__init__.py", line 5, in <module>
    from . import RSH
  File "/wrkdirs/usr/ports/math/py-gau2grid/work-py36/gau2grid-1.3.0/gau2grid/RSH.py", line 10, in <module>
    import numpy as np
  File "/usr/local/lib/python3.6/site-packages/numpy/__init__.py", line 142, in <module>
    from . import add_newdocs
  File "/usr/local/lib/python3.6/site-packages/numpy/add_newdocs.py", line 13, in <module>
    from numpy.lib import add_newdoc
  File "/usr/local/lib/python3.6/site-packages/numpy/lib/__init__.py", line 8, in <module>
    from .type_check import *
  File "/usr/local/lib/python3.6/site-packages/numpy/lib/type_check.py", line 11, in <module>
    import numpy.core.numeric as _nx
  File "/usr/local/lib/python3.6/site-packages/numpy/core/__init__.py", line 26, in <module>
    raise ImportError(msg)
ImportError: 
Importing the multiarray numpy extension module failed.  Most
likely you are trying to import a failed build of numpy.
If you're working with a numpy git repo, try `git clean -xdf` (removes all
files not under version control).  Otherwise reinstall numpy.

Original error was: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv@GCC_3.5"

--- gau2grid.h ---
*** [gau2grid.h] Error code 1

make[3]: stopped in /wrkdirs/usr/ports/math/py-gau2grid/work-py36/gau2grid-1.3.0/build/temp.freebsd-12.0-RELEASE-p2-arm-3.6
1 error

make[3]: stopped in /wrkdirs/usr/ports/math/py-gau2grid/work-py36/gau2grid-1.3.0/build/temp.freebsd-12.0-RELEASE-p2-arm-3.6
--- CMakeFiles/gg.dir/all ---
*** [CMakeFiles/gg.dir/all] Error code 2

make[2]: stopped in /wrkdirs/usr/ports/math/py-gau2grid/work-py36/gau2grid-1.3.0/build/temp.freebsd-12.0-RELEASE-p2-arm-3.6
1 error

make[2]: stopped in /wrkdirs/usr/ports/math/py-gau2grid/work-py36/gau2grid-1.3.0/build/temp.freebsd-12.0-RELEASE-p2-arm-3.6
*** [all] Error code 2

make[1]: stopped in /wrkdirs/usr/ports/math/py-gau2grid/work-py36/gau2grid-1.3.0/build/temp.freebsd-12.0-RELEASE-p2-arm-3.6
1 error

make[1]: stopped in /wrkdirs/usr/ports/math/py-gau2grid/work-py36/gau2grid-1.3.0/build/temp.freebsd-12.0-RELEASE-p2-arm-3.6
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "setup.py", line 143, in <module>
    zip_safe=False, )
  File "/usr/local/lib/python3.6/site-packages/setuptools/__init__.py", line 143, in setup
    return distutils.core.setup(**attrs)
  File "/usr/local/lib/python3.6/distutils/core.py", line 148, in setup
    dist.run_commands()
  File "/usr/local/lib/python3.6/distutils/dist.py", line 955, in run_commands
    self.run_command(cmd)
  File "/usr/local/lib/python3.6/distutils/dist.py", line 974, in run_command
    cmd_obj.run()
  File "/usr/local/lib/python3.6/distutils/command/build.py", line 135, in run
    self.run_command(cmd_name)
  File "/usr/local/lib/python3.6/distutils/cmd.py", line 313, in run_command
    self.distribution.run_command(command)
  File "/usr/local/lib/python3.6/distutils/dist.py", line 974, in run_command
    cmd_obj.run()
  File "setup.py", line 33, in run
    self.build_extension(ext)
  File "setup.py", line 60, in build_extension
    subprocess.check_call(['cmake', '--build', '.'] + build_args, cwd=self.build_temp)
  File "/usr/local/lib/python3.6/subprocess.py", line 291, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['cmake', '--build', '.', '--config', 'Release', '--', '-j2']' returned non-zero exit status 2.
*** Error code 1

Stop.
make: stopped in /usr/ports/math/py-gau2grid



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