Date: Tue, 19 Jan 2021 09:01:41 +0000 (UTC) From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r562035 - in head/biology: . biosoup Message-ID: <202101190901.10J91faG043091@repo.freebsd.org>
next in thread | raw e-mail | index | archive | help
Author: yuri Date: Tue Jan 19 09:01:41 2021 New Revision: 562035 URL: https://svnweb.freebsd.org/changeset/ports/562035 Log: New port: biology/biosoup: Collection of C++ header-only data structures for bioinformatics Added: head/biology/biosoup/ head/biology/biosoup/Makefile (contents, props changed) head/biology/biosoup/distinfo (contents, props changed) head/biology/biosoup/pkg-descr (contents, props changed) Modified: head/biology/Makefile Modified: head/biology/Makefile ============================================================================== --- head/biology/Makefile Tue Jan 19 08:35:04 2021 (r562034) +++ head/biology/Makefile Tue Jan 19 09:01:41 2021 (r562035) @@ -13,6 +13,7 @@ SUBDIR += bioawk SUBDIR += biococoa SUBDIR += bioparser + SUBDIR += biosoup SUBDIR += bolt-lmm SUBDIR += bowtie SUBDIR += bowtie2 Added: head/biology/biosoup/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/biosoup/Makefile Tue Jan 19 09:01:41 2021 (r562035) @@ -0,0 +1,38 @@ +# $FreeBSD$ + +PORTNAME= biosoup +DISTVERSION= g20201216 +CATEGORIES= biology devel + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Collection of C++ header-only data structures for bioinformatics + +LICENSE= MIT +LICENSE_FILE= ${WRKSRC}/LICENSE + +TEST_DEPENDS= googletest>0:devel/googletest + +USES= cmake + +USE_GITHUB= yes +GH_ACCOUNT= rvaser +GH_TAGNAME= e2b39f1 + +NO_ARCH= yes + +PLIST_FILES= include/biosoup/nucleic_acid.hpp \ + include/biosoup/overlap.hpp \ + include/biosoup/progress_bar.hpp \ + include/biosoup/sequence.hpp \ + include/biosoup/timer.hpp + +do-install: + cd ${WRKSRC}/include && ${COPYTREE_SHARE} ${PORTNAME} ${STAGEDIR}${PREFIX}/include + +do-test: + @cd ${BUILD_WRKSRC} && \ + ${SETENV} ${CONFIGURE_ENV} ${CMAKE_BIN} ${CMAKE_ARGS} -D${PORTNAME}_build_tests:BOOL=ON ${CMAKE_SOURCE_PATH} && \ + ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} && \ + ${BUILD_WRKSRC}/bin/${PORTNAME}_test + +.include <bsd.port.mk> Added: head/biology/biosoup/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/biosoup/distinfo Tue Jan 19 09:01:41 2021 (r562035) @@ -0,0 +1,3 @@ +TIMESTAMP = 1611046547 +SHA256 (rvaser-biosoup-g20201216-e2b39f1_GH0.tar.gz) = fe122e65d1691ca781584d8bb42538c5904852ccbb1ec48bc13aa2652b0f9ddc +SIZE (rvaser-biosoup-g20201216-e2b39f1_GH0.tar.gz) = 6979 Added: head/biology/biosoup/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/biosoup/pkg-descr Tue Jan 19 09:01:41 2021 (r562035) @@ -0,0 +1,4 @@ +Biosoup is a c++ collection of header only data structures used for storage and +logging in bioinformatics tools. + +WWW: https://github.com/rvaser/biosoup
Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?202101190901.10J91faG043091>