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Date:      Sun, 10 Nov 2019 07:53:16 GMT
From:      pkg-fallout@FreeBSD.org
To:        yuri@FreeBSD.org
Cc:        pkg-fallout@FreeBSD.org
Subject:   [package - head-i386-default][biology/ncbi-cxx-toolkit] Failed for ncbi-cxx-toolkit-21.0.0_2 in build
Message-ID:  <201911100753.xAA7rG88023766@beefy17.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Last committer: zeising@FreeBSD.org
Ident:          $FreeBSD: head/biology/ncbi-cxx-toolkit/Makefile 516742 2019-11-04 21:08:20Z zeising $
Log URL:        http://beefy17.nyi.freebsd.org/data/head-i386-default/p517099_s354566/logs/ncbi-cxx-toolkit-21.0.0_2.log
Build URL:      http://beefy17.nyi.freebsd.org/build.html?mastername=head-i386-default&build=p517099_s354566
Log:

=>> Building biology/ncbi-cxx-toolkit
build started at Sun Nov 10 06:12:46 UTC 2019
port directory: /usr/ports/biology/ncbi-cxx-toolkit
package name: ncbi-cxx-toolkit-21.0.0_2
building for: FreeBSD head-i386-default-job-11 13.0-CURRENT FreeBSD 13.0-CURRENT 1300056 i386
maintained by: yuri@FreeBSD.org
Makefile ident:      $FreeBSD: head/biology/ncbi-cxx-toolkit/Makefile 516742 2019-11-04 21:08:20Z zeising $
Poudriere version: 3.2.8-5-gc81843e5
Host OSVERSION: 1300047
Jail OSVERSION: 1300056
Job Id: 11




!!! Jail is newer than host. (Jail: 1300056, Host: 1300047) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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=======================<phase: check-sanity   >============================
===>  License PD accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   ncbi-cxx-toolkit-21.0.0_2 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.12.0.txz
[head-i386-default-job-11] Installing pkg-1.12.0...
[head-i386-default-job-11] Extracting pkg-1.12.0: .......... done
===>   ncbi-cxx-toolkit-21.0.0_2 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of ncbi-cxx-toolkit-21.0.0_2
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License PD accepted by the user
===> Fetching all distfiles required by ncbi-cxx-toolkit-21.0.0_2 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License PD accepted by the user
===> Fetching all distfiles required by ncbi-cxx-toolkit-21.0.0_2 for building
=> SHA256 Checksum OK for ncbi_cxx--21_0_0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License PD accepted by the user
===> Fetching all distfiles required by ncbi-cxx-toolkit-21.0.0_2 for building
===>  Extracting for ncbi-cxx-toolkit-21.0.0_2
=> SHA256 Checksum OK for ncbi_cxx--21_0_0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for ncbi-cxx-toolkit-21.0.0_2
===>  Applying FreeBSD patches for ncbi-cxx-toolkit-21.0.0_2
===========================================================================
=======================<phase: build-depends  >============================
===>   ncbi-cxx-toolkit-21.0.0_2 depends on executable: gmake - not found
===>   Installing existing package /packages/All/gmake-4.2.1_3.txz
[head-i386-default-job-11] Installing gmake-4.2.1_3...
[head-i386-default-job-11] `-- Installing gettext-runtime-0.20.1...
[head-i386-default-job-11] |   `-- Installing indexinfo-0.3.1...
[head-i386-default-job-11] |   `-- Extracting indexinfo-0.3.1: .... done
<snip>
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/demo/blastinput_demo.cpp:36:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/util/sequence.hpp:50:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/feat_ci.hpp:37:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/annot_types_ci.hpp:38:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/impl/annot_collector.hpp:510:5: warning: 'auto_ptr<ncbi::objects::CAnnotMappingCollector>' is deprecated [-Wdeprecated-declarations]
    auto_ptr<CAnnotMappingCollector> m_MappingCollector;
    ^
/usr/include/c++/v1/memory:2079:28: note: 'auto_ptr<ncbi::objects::CAnnotMappingCollector>' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/usr/include/c++/v1/__config:945:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/usr/include/c++/v1/__config:934:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/demo/blastinput_demo.cpp:36:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/util/sequence.hpp:50:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/feat_ci.hpp:37:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/annot_types_ci.hpp:38:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/impl/annot_collector.hpp:518:5: warning: 'auto_ptr<std::__1::set<ncbi::CConstRef<ncbi::objects::CSeq_loc, ncbi::CObjectCounterLocker>, std::__1::less<ncbi::CConstRef<ncbi::objects::CSeq_loc, ncbi::CObjectCounterLocker> >, std::__1::allocator<ncbi::CConstRef<ncbi::objects::CSeq_loc, ncbi::CObjectCounterLocker> > > >' is deprecated [-Wdeprecated-declarations]
    auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
    ^
/usr/include/c++/v1/memory:2079:28: note: 'auto_ptr<std::__1::set<ncbi::CConstRef<ncbi::objects::CSeq_loc, ncbi::CObjectCounterLocker>, std::__1::less<ncbi::CConstRef<ncbi::objects::CSeq_loc, ncbi::CObjectCounterLocker> >, std::__1::allocator<ncbi::CConstRef<ncbi::objects::CSeq_loc, ncbi::CObjectCounterLocker> > > >' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/usr/include/c++/v1/__config:945:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/usr/include/c++/v1/__config:934:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/demo/blastinput_demo.cpp:36:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/util/sequence.hpp:50:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/feat_ci.hpp:37:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/annot_types_ci.hpp:38:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/impl/annot_collector.hpp:523:13: warning: 'auto_ptr<std::__1::set<ncbi::objects::CAnnotName, std::__1::less<ncbi::objects::CAnnotName>, std::__1::allocator<ncbi::objects::CAnnotName> > >' is deprecated [-Wdeprecated-declarations]
    mutable auto_ptr<TAnnotNames> m_AnnotNames;
            ^
/usr/include/c++/v1/memory:2079:28: note: 'auto_ptr<std::__1::set<ncbi::objects::CAnnotName, std::__1::less<ncbi::objects::CAnnotName>, std::__1::allocator<ncbi::objects::CAnnotName> > >' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/usr/include/c++/v1/__config:945:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/usr/include/c++/v1/__config:934:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/demo/blastinput_demo.cpp:36:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/util/sequence.hpp:54:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/util/create_defline.hpp:39:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objects/seqfeat/BioSource.hpp:43:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objects/seqfeat/SubSource.hpp:233:12: warning: 'auto_ptr<ncbi::objects::CLatLonCountryMap>' is deprecated [-Wdeprecated-declarations]
    static auto_ptr<CLatLonCountryMap> m_LatLonCountryMap;
           ^
/usr/include/c++/v1/memory:2079:28: note: 'auto_ptr<ncbi::objects::CLatLonCountryMap>' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/usr/include/c++/v1/__config:945:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/usr/include/c++/v1/__config:934:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/demo/blastinput_demo.cpp:36:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/util/sequence.hpp:54:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/util/create_defline.hpp:39:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objects/seqfeat/BioSource.hpp:43:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objects/seqfeat/SubSource.hpp:234:12: warning: 'auto_ptr<ncbi::objects::CLatLonCountryMap>' is deprecated [-Wdeprecated-declarations]
    static auto_ptr<CLatLonCountryMap> m_LatLonWaterMap;
           ^
/usr/include/c++/v1/memory:2079:28: note: 'auto_ptr<ncbi::objects::CLatLonCountryMap>' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/usr/include/c++/v1/__config:945:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/usr/include/c++/v1/__config:934:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/demo/blastinput_demo.cpp:36:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/util/sequence.hpp:54:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/util/create_defline.hpp:41:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/util/feature.hpp:40:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objects/seqfeat/Gb_qual.hpp:51:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/serial/iterator.hpp:467:5: warning: 'auto_ptr<std::__1::set<const void *, std::__1::less<const void *>, std::__1::allocator<const void *> > >' is deprecated [-Wdeprecated-declarations]
    auto_ptr<TVisitedObjects> m_VisitedObjects;
    ^
/usr/include/c++/v1/memory:2079:28: note: 'auto_ptr<std::__1::set<const void *, std::__1::less<const void *>, std::__1::allocator<const void *> > >' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/usr/include/c++/v1/__config:945:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/usr/include/c++/v1/__config:934:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/demo/blastinput_demo.cpp:36:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/util/sequence.hpp:54:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/util/create_defline.hpp:42:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/util/indexer.hpp:43:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/object_manager.hpp:276:5: warning: 'auto_ptr<ncbi::CPluginManager<ncbi::objects::CDataLoader> >' is deprecated [-Wdeprecated-declarations]
    auto_ptr<TPluginManager> m_PluginManager;
    ^
/usr/include/c++/v1/memory:2079:28: note: 'auto_ptr<ncbi::CPluginManager<ncbi::objects::CDataLoader> >' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/usr/include/c++/v1/__config:945:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/usr/include/c++/v1/__config:934:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/demo/blastinput_demo.cpp:36:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/util/sequence.hpp:364:9: warning: 'auto_ptr<ncbi::objects::CFeat_CI>' is deprecated [-Wdeprecated-declarations]
        auto_ptr<CFeat_CI> &feat_ci,
        ^
/usr/include/c++/v1/memory:2079:28: note: 'auto_ptr<ncbi::objects::CFeat_CI>' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/usr/include/c++/v1/__config:945:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/usr/include/c++/v1/__config:934:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/demo/blastinput_demo.cpp:36:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/objmgr/util/sequence.hpp:862:5: warning: 'auto_ptr<ncbi::objects::sequence::CDeflineGenerator>' is deprecated [-Wdeprecated-declarations]
    auto_ptr<sequence::CDeflineGenerator> m_Gen;
    ^
/usr/include/c++/v1/memory:2079:28: note: 'auto_ptr<ncbi::objects::sequence::CDeflineGenerator>' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/usr/include/c++/v1/__config:945:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/usr/include/c++/v1/__config:934:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/demo/blastinput_demo.cpp:40:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/algo/blast/blastinput/blast_input_aux.hpp:64:5: warning: 'auto_ptr<std::__1::basic_ostream<char> >' is deprecated [-Wdeprecated-declarations]
    auto_ptr<CNcbiOstream> m_FileStream;
    ^
/usr/include/c++/v1/memory:2079:28: note: 'auto_ptr<std::__1::basic_ostream<char> >' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/usr/include/c++/v1/__config:945:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/usr/include/c++/v1/__config:934:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/demo/blastinput_demo.cpp:70:5: warning: 'auto_ptr<ncbi::CArgDescriptions>' is deprecated [-Wdeprecated-declarations]
    auto_ptr<CArgDescriptions> arg_desc(new CArgDescriptions);
    ^
/usr/include/c++/v1/memory:2079:28: note: 'auto_ptr<ncbi::CArgDescriptions>' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/usr/include/c++/v1/__config:945:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/usr/include/c++/v1/__config:934:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
18 warnings generated.
ld: error: /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/lib/libvalid.so: undefined reference to ncbi::CRegexp::CRegexp(ncbi::CTempStringEx, unsigned int)
ld: error: /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/lib/libvalid.so: undefined reference to ncbi::CRegexp::~CRegexp()
clang-cpp: error: linker command failed with exit code 1 (use -v to see invocation)
gmake[7]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/Makefile.app:156: blastinput_demo] Error 1
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/blastinput/demo'
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/demo/blastinput_demo.cpp.
/usr/bin/c++  -stdlib=libc++ -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing   -Wno-deprecated-register -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include  -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/util/lmdb -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/include/util/lmdb /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/algo/blast/blastinput/demo/blastinput_demo.cpp -o blastinput_demo.o 
/usr/bin/c++ -stdlib=libc++ -std=gnu++11 -Wl,-rpath,/usr/local/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fstack-protector-strong -O blastinput_demo.o -Wl,-rpath-link,/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/lib -L/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lentrez2cli -lentrez2 -lproteinkmer -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -llmdb -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -ldbapi
 _driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -pthread -lz -lz -lbz2 -lm -pthread -o blastinput_demo
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/blastinput/demo'
FAILED: src/algo/blast/blastinput/demo/Makefile.blastinput_demo.app
gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/blastinput/demo'
gmake[7]: warning: -jN forced in submake: disabling jobserver mode.
/bin/rm -f blastinput_demo .blastinput_demo.stamp
gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/blastinput/demo'
gmake[6]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/build-system/Makefile.meta_l:304: all.nonusr] Error 2
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/blastinput/demo'
gmake[5]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast/blastinput'
gmake[4]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo/blast'
gmake[3]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build/algo'
gmake[2]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/Clang-ReleaseMTDLL/build'
gmake[1]: *** [Makefile:24: all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0'
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/ncbi-cxx-toolkit



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