Date: Thu, 23 Jan 2014 00:34:24 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [LEGACY - 83i386-default][science/jmol] Build failed for jmol-13.2.3 during build Message-ID: <201401230034.s0N0YOYW095160@beefy3.isc.freebsd.org>
next in thread | raw e-mail | index | archive | help
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: ports@FreeBSD.org Last committer: pawel@FreeBSD.org Ident: $FreeBSD: head/science/jmol/Makefile 333140 2013-11-07 16:53:33Z pawel $ Log URL: http://beefy3.isc.freebsd.org/bulk/83i386-default/2014-01-22_16h16m29s/logs/jmol-13.2.3.log Build URL: http://beefy3.isc.freebsd.org/bulk/83i386-default/2014-01-22_16h16m29s Log: ====>> Building science/jmol build started at Thu Jan 23 00:32:24 UTC 2014 port directory: /usr/ports/science/jmol building for: FreeBSD pkg.FreeBSD.org 8.3-RELEASE-p14 FreeBSD 8.3-RELEASE-p14 i386 maintained by: ports@FreeBSD.org Makefile ident: $FreeBSD: head/science/jmol/Makefile 333140 2013-11-07 16:53:33Z pawel $ Poudriere version: 3.1-pre ---Begin Environment--- UNAME_m=i386 UNAME_p=i386 OSVERSION=803000 UNAME_v=FreeBSD 8.3-RELEASE-p14 UNAME_r=8.3-RELEASE-p14 FTP_PASSIVE_MODE=YES BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 MASTERMNT=/usr/local/poudriere/data/build/83i386-default/ref PKG_EXT=tbz FORCE_PACKAGE=yes tpid=12175 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNG=0 PKGNAME=jmol-13.2.3 PKG_DELETE=pkg_delete PKG_ADD=pkg_add PWD=/root MASTERNAME=83i386-default USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes PKG_VERSION=pkg_version ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for jmol-13.2.3: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- TMPDIR="/tmp" JAVA_HOME=/usr/local/openjdk7 SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444" --End MAKE_ENV-- --SUB_LIST-- JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" JAVA_VERSION="1.7+" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/jmol DOCSDIR=/usr/local/share/doc/jmol EXAMPLESDIR=/usr/local/share/examples/jmol WWWDIR=/usr/local/www/jmol ETCDIR=/usr/local/etc/jmol --End SUB_LIST-- ---Begin make.conf--- ARCH=i386 MACHINE=i386 MACHINE_ARCH=i386 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ===> Cleaning for jmol-13.2.3 =======================<phase: check-config >============================ =========================================================================== =======================<phase: pkg-depends >============================ =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ => Jmol-13.2.3-full.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch http://downloads.sourceforge.net/project/jmol/Jmol/Version%2013.2/Version%2013.2.3/Jmol-13.2.3-full.tar.gz Jmol-13.2.3-full.tar.gz 110 MB 6242 kBps => selfSignedCertificate.cer doesn't seem to exist in /distfiles/. => Attempting to fetch http://jmol.svn.sourceforge.net/viewvc/jmol/trunk/Jmol/selfSignedCertificate/selfSignedCertificate.cer fetch: http://jmol.svn.sourceforge.net/viewvc/jmol/trunk/Jmol/selfSignedCertificate/selfSignedCertificate.cer: size mismatch: expected 735, actual 21232 => Attempting to fetch ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/selfSignedCertificate.cer selfSignedCertificate.cer 735 B 47 kBps => selfSignedCertificate.store doesn't seem to exist in /distfiles/. => Attempting to fetch http://jmol.svn.sourceforge.net/viewvc/jmol/trunk/Jmol/selfSignedCertificate/selfSignedCertificate.store fetch: http://jmol.svn.sourceforge.net/viewvc/jmol/trunk/Jmol/selfSignedCertificate/selfSignedCertificate.store: size mismatch: expected 1516, actual 21229 => Attempting to fetch ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/selfSignedCertificate.store selfSignedCertificate.store 1516 B 136 kBps ===> Fetching all distfiles required by jmol-13.2.3 for building =========================================================================== =======================<phase: checksum >============================ ===> Fetching all distfiles required by jmol-13.2.3 for building => SHA256 Checksum OK for Jmol-13.2.3-full.tar.gz. => SHA256 Checksum OK for selfSignedCertificate.cer. => SHA256 Checksum OK for selfSignedCertificate.store. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> Fetching all distfiles required by jmol-13.2.3 for building ===> Extracting for jmol-13.2.3 => SHA256 Checksum OK for Jmol-13.2.3-full.tar.gz. => SHA256 Checksum OK for selfSignedCertificate.cer. => SHA256 Checksum OK for selfSignedCertificate.store. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for jmol-13.2.3 =========================================================================== =======================<phase: build-depends >============================ ===> jmol-13.2.3 depends on file: /usr/local/openjdk7/bin/java - not found ===> Verifying install for /usr/local/openjdk7/bin/java in /usr/ports/java/openjdk7 ===> Installing existing package /packages/All/openjdk-7.25.15_2,1.tbz Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: caching, new cache contents: 0 fonts, 1 dirs /usr/local/lib/X11/fonts/local: caching, new cache contents: 0 fonts, 0 dirs /root/.local/share/fonts: skipping, no such directory /root/.fonts: skipping, no such directory /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: caching, new cache contents: 0 fonts, 1 dirs /root/.local/share/fonts: skipping, no such directory /root/.fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory /root/.cache/fontconfig: not cleaning non-existent cache directory /root/.fontconfig: not cleaning non-existent cache directory fc-cache: succeeded Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/lib/X11/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===> Returning to build of jmol-13.2.3 ===> jmol-13.2.3 depends on file: /usr/local/bin/ant - not found ===> Verifying install for /usr/local/bin/ant in /usr/ports/devel/apache-ant ===> Installing existing package /packages/All/apache-ant-1.9.3.tbz ====================================================================== This OpenJDK implementation requires fdescfs(5) mounted on /dev/fd and procfs(5) mounted on /proc. If you have not done it yet, please do the following: mount -t fdescfs fdesc /dev/fd mount -t procfs proc /proc To make it permanent, you need the following lines in /etc/fstab: fdesc /dev/fd fdescfs rw 0 0 proc /proc procfs rw 0 0 ====================================================================== ===> Returning to build of jmol-13.2.3 =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for jmol-13.2.3 =========================================================================== =======================<phase: build >============================ ===> Building for jmol-13.2.3 Buildfile: /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build.xml [copy] Copying 1 file to /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3 [echo] version=13.2.3 init: setup: check.docbook-xml: [mkdir] Created dir: /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/docbook-xml [unzip] Expanding: /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/doc/docbook-xml-4.4.zip into /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/docbook-xml [touch] Creating /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/docbook-xml.timestamp check.docbook-xsl: [mkdir] Created dir: /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/docbook-xsl-1.76.1 [untar] Expanding: /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/doc/docbook-xsl-1.76.1.tar.gz into /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build [touch] Creating /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/docbook-xsl-1.76.1.timestamp check.xsl: initdoc: jmolGuide: [echo] Generating user's guide [mkdir] Created dir: /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/doc/JmolUserGuide [java] Writing ch01.html for chapter(intro) [java] Writing ch02s02.html for section(OptionScript) [java] Writing ch02s03.html for section(OptionGeometry) [java] Writing ch02s04.html for section(OptionLanguage) [java] Writing ch02s05.html for section(OptionSpeed) [java] Writing ch02s06.html for section(OptionPluginDir) [java] Writing ch02s07.html for section(OptionXmx) [java] Writing ch02.html for chapter(commandlineoptions) [java] Writing ch03s02.html for section(EditMenu) [java] Writing ch03s03.html for section(DisplayMenu) [java] Writing ch03s04.html for section(ViewMenu) [java] Writing ch03s05.html for section(HelpMenu) [java] Writing ch03.html for chapter(menudesc) [java] Element img in namespace '' encountered in para, but no template matches. [java] Element img in namespace '' encountered in para, but no template matches. [java] Element img in namespace '' encountered in para, but no template matches. [java] Writing ch04.html for chapter(rasmol) [java] Writing index.html for book [echo] Generating user's guide (fr) [mkdir] Created dir: /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/doc/JmolUserGuide_fr [java] Writing ch01.html for chapter(intro) [java] Writing ch02s02.html for section(OptionLanguage) [java] Writing ch02s03.html for section(OptionSpeed) [java] Writing ch02s04.html for section(OptionXmx) [java] Writing ch02.html for chapter(commandlineoptions) [java] Writing ch03s02.html for section(EditMenu) [java] Writing ch03s03.html for section(DisplayMenu) [java] Writing ch03s04.html for section(ViewMenu) [java] Writing ch03s05.html for section(HelpMenu) [java] Writing ch03.html for chapter(menudesc) [java] Element img in namespace '' encountered in para, but no template matches. [java] Element img in namespace '' encountered in para, but no template matches. [java] Element img in namespace '' encountered in para, but no template matches. [java] Writing ch04.html for chapter(rasmol) [java] Writing index.html for book jmolDevelopersGuide: [echo] Generating developer's guide [echo] Generating developer's guide (fr) [echo] Generating developer's guide (de) jmolAppletGuide: [echo] Generating applet guide [echo] Generating applet guide (fr) [echo] Generating applet guide (de) jmolHistory: [echo] Generating history of changes [mkdir] Created dir: /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/doc/JmolHistory [echo] Generating history of changes (fr) [echo] Generating history of changes (nl) [echo] Generating history of changes (ro) javadoc: [mkdir] Created dir: /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/javadoc [javadoc] Generating Javadoc [javadoc] Javadoc execution [javadoc] Loading source files for package org.jmol.adapter.readers.cifpdb... [javadoc] Loading source files for package org.jmol.adapter.readers.molxyz... [javadoc] Loading source files for package org.jmol.adapter.readers.more... [javadoc] Loading source files for package org.jmol.adapter.readers.pymol... [javadoc] Loading source files for package org.jmol.adapter.readers.quantum... [javadoc] Loading source files for package org.jmol.adapter.readers.simple... [javadoc] Loading source files for package org.jmol.adapter.readers.xml... [javadoc] Loading source files for package org.jmol.adapter.readers.xtal... [javadoc] Loading source files for package org.jmol.adapter.smarter... [javadoc] Loading source files for package org.jmol.api... [javadoc] Loading source files for package org.jmol.applet... [javadoc] Loading source files for package org.jmol.appletjs... [javadoc] Loading source files for package org.jmol.atomdata... [javadoc] Loading source files for package org.jmol.awt... [javadoc] Loading source files for package org.jmol.awtjs... [javadoc] Loading source files for package org.jmol.awtjs2d... [javadoc] Loading source files for package org.jmol.bspt... [javadoc] Loading source files for package org.jmol.console... [javadoc] Loading source files for package org.jmol.consolejs... [javadoc] Loading source files for package org.jmol.constant... [javadoc] Loading source files for package org.jmol.export... [javadoc] Loading source files for package org.jmol.export.dialog... [javadoc] Loading source files for package org.jmol.export.history... [javadoc] Loading source files for package org.jmol.export.image... [javadoc] Loading source files for package org.jmol.exportjs... [javadoc] Loading source files for package org.jmol.g3d... [javadoc] Loading source files for package org.jmol.geodesic... [javadoc] Loading source files for package org.jmol.i18n... [javadoc] Loading source files for package org.jmol.io... [javadoc] Loading source files for package org.jmol.io2... [javadoc] Loading source files for package org.jmol.jvxl.api... [javadoc] Loading source files for package org.jmol.jvxl.calc... [javadoc] Loading source files for package org.jmol.jvxl.data... [javadoc] Loading source files for package org.jmol.jvxl.readers... [javadoc] Loading source files for package org.jmol.minimize... [javadoc] Loading source files for package org.jmol.minimize.forcefield... [javadoc] Loading source files for package org.jmol.modelkit... [javadoc] Loading source files for package org.jmol.modelset... [javadoc] Loading source files for package org.jmol.modelsetbio... [javadoc] Loading source files for package org.jmol.multitouch... [javadoc] Loading source files for package org.jmol.multitouch.jni... [javadoc] Loading source files for package org.jmol.multitouch.sparshui... [javadoc] Loading source files for package org.jmol.navigate... [javadoc] 1 error [javadoc] javadoc: error - java.lang.OutOfMemoryError: Please increase memory. [javadoc] For example, on the JDK Classic or HotSpot VMs, add the option -J-Xmx [javadoc] such as -J-Xmx32m. doc: classes: [mkdir] Created dir: /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/classes [javac] Compiling 727 source files to /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/classes [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5 [javac] [javac] [javac] The system is out of resources. [javac] Consult the following stack trace for details. [javac] java.lang.OutOfMemoryError: Java heap space [javac] at java.nio.HeapByteBuffer.<init>(HeapByteBuffer.java:57) [javac] at java.nio.ByteBuffer.allocate(ByteBuffer.java:331) [javac] at com.sun.tools.javac.util.BaseFileManager$ByteBufferCache.get(BaseFileManager.java:308) [javac] at com.sun.tools.javac.util.BaseFileManager.makeByteBuffer(BaseFileManager.java:280) [javac] at com.sun.tools.javac.file.RegularFileObject.getCharContent(RegularFileObject.java:112) [javac] at com.sun.tools.javac.file.RegularFileObject.getCharContent(RegularFileObject.java:52) [javac] at com.sun.tools.javac.main.JavaCompiler.readSource(JavaCompiler.java:571) [javac] at com.sun.tools.javac.main.JavaCompiler.parse(JavaCompiler.java:632) [javac] at com.sun.tools.javac.main.JavaCompiler.parseFiles(JavaCompiler.java:909) [javac] at com.sun.tools.javac.main.JavaCompiler.compile(JavaCompiler.java:824) [javac] at com.sun.tools.javac.main.Main.compile(Main.java:439) [javac] at com.sun.tools.javac.main.Main.compile(Main.java:353) [javac] at com.sun.tools.javac.main.Main.compile(Main.java:342) [javac] at com.sun.tools.javac.main.Main.compile(Main.java:333) [javac] at com.sun.tools.javac.Main.compile(Main.java:76) [javac] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [javac] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) [javac] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [javac] at java.lang.reflect.Method.invoke(Method.java:606) [javac] at org.apache.tools.ant.taskdefs.compilers.Javac13.execute(Javac13.java:56) [javac] at org.apache.tools.ant.taskdefs.Javac.compile(Javac.java:1153) [javac] at org.apache.tools.ant.taskdefs.Javac.execute(Javac.java:930) [javac] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:292) [javac] at sun.reflect.GeneratedMethodAccessor4.invoke(Unknown Source) [javac] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [javac] at java.lang.reflect.Method.invoke(Method.java:606) [javac] at org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:106) [javac] at org.apache.tools.ant.Task.perform(Task.java:348) [javac] at org.apache.tools.ant.Target.execute(Target.java:435) [javac] at org.apache.tools.ant.Target.performTasks(Target.java:456) [javac] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1393) [javac] at org.apache.tools.ant.Project.executeTarget(Project.java:1364) BUILD FAILED /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build.xml:228: Compile failed; see the compiler error output for details. Total time: 50 seconds *** Error code 1 Stop in /usr/ports/science/jmol. ===> Cleaning for jmol-13.2.3
Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?201401230034.s0N0YOYW095160>