Date: Sat, 23 Mar 2013 03:27:46 +0900 From: KATO Tsuguru <tkato432@yahoo.com> To: FreeBSD-gnats-submit@FreeBSD.org Subject: ports/177243: science/gromacs: Update to version 4.6.1 Message-ID: <20130323032746.1c2cae6381e5819f59b72101@yahoo.com> Resent-Message-ID: <201303221840.r2MIe0C7020025@freefall.freebsd.org>
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>Number: 177243 >Category: ports >Synopsis: science/gromacs: Update to version 4.6.1 >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Fri Mar 22 18:40:00 UTC 2013 >Closed-Date: >Last-Modified: >Originator: KATO Tsuguru >Release: FreeBSD 7.4-RELEASE-p10 i386 >Organization: >Environment: >Description: - Update to version 4.6.1 >How-To-Repeat: >Fix: diff -urN /usr/ports/science/gromacs/Makefile science/gromacs/Makefile --- /usr/ports/science/gromacs/Makefile 2013-02-10 22:27:35.000000000 +0900 +++ science/gromacs/Makefile 2013-03-10 17:37:17.000000000 +0900 @@ -2,7 +2,7 @@ # $FreeBSD: head/science/gromacs/Makefile 312002 2013-02-10 07:56:49Z miwi $ PORTNAME= gromacs -PORTVERSION= 4.6 +PORTVERSION= 4.6.1 CATEGORIES= science MASTER_SITES= ftp://ftp.gromacs.org/pub/gromacs/ @@ -127,7 +127,7 @@ @${FIND} ${WRKSRC} -name "CMakeLists.txt" | ${XARGS} \ ${REINPLACE_CMD} -e \ 's|share/man|man| ; \ - s|-lpthread|${PTHREAD_LIBS}| ; \ + s|-lpthread|-pthread| ; \ /pkgconfig/s|LIB_INSTALL_DIR}|CMAKE_INSTALL_PREFIX}/libdata|' @${FIND} ${WRKSRC} -name "GMXRC.*" | ${XARGS} ${REINPLACE_CMD} -e \ 's|LDLIB/pkgconfig|LDLIB/../libdata/pkgconfig| ; \ diff -urN /usr/ports/science/gromacs/distinfo science/gromacs/distinfo --- /usr/ports/science/gromacs/distinfo 2013-02-10 22:27:35.000000000 +0900 +++ science/gromacs/distinfo 2013-03-10 16:23:11.000000000 +0900 @@ -1,2 +1,2 @@ -SHA256 (gromacs-4.6.tar.gz) = f695ea814b10cb9afa8d69241fed703c6e20156bab96ed4b25f817ad85a8dbde -SIZE (gromacs-4.6.tar.gz) = 10098687 +SHA256 (gromacs-4.6.1.tar.gz) = a0514b2a04ecac7461a67fc8edefa2b8eeaf22a25cd61c3348042dd077b077e6 +SIZE (gromacs-4.6.1.tar.gz) = 9975315 diff -urN /usr/ports/science/gromacs/pkg-plist science/gromacs/pkg-plist --- /usr/ports/science/gromacs/pkg-plist 2013-02-10 22:27:35.000000000 +0900 +++ science/gromacs/pkg-plist 2013-03-10 17:43:09.000000000 +0900 @@ -343,13 +343,13 @@ include/gromacs/xtcio.h include/gromacs/xvgr.h lib/libgmx%%SUFFIX_MPI%%%%SUFFIX_D%%.so -lib/libgmx%%SUFFIX_MPI%%%%SUFFIX_D%%.so.6 +lib/libgmx%%SUFFIX_MPI%%%%SUFFIX_D%%.so.8 lib/libgmxana%%SUFFIX_MPI%%%%SUFFIX_D%%.so -lib/libgmxana%%SUFFIX_MPI%%%%SUFFIX_D%%.so.6 +lib/libgmxana%%SUFFIX_MPI%%%%SUFFIX_D%%.so.8 lib/libgmxpreprocess%%SUFFIX_MPI%%%%SUFFIX_D%%.so -lib/libgmxpreprocess%%SUFFIX_MPI%%%%SUFFIX_D%%.so.6 +lib/libgmxpreprocess%%SUFFIX_MPI%%%%SUFFIX_D%%.so.8 lib/libmd%%SUFFIX_MPI%%%%SUFFIX_D%%.so -lib/libmd%%SUFFIX_MPI%%%%SUFFIX_D%%.so.6 +lib/libmd%%SUFFIX_MPI%%%%SUFFIX_D%%.so.8 libdata/pkgconfig/libgmx%%SUFFIX_MPI%%%%SUFFIX_D%%.pc libdata/pkgconfig/libgmxana%%SUFFIX_MPI%%%%SUFFIX_D%%.pc libdata/pkgconfig/libgmxpreprocess%%SUFFIX_MPI%%%%SUFFIX_D%%.pc @@ -431,6 +431,8 @@ %%DATADIR%%/html/online/g_dipoles.html %%DATADIR%%/html/online/g_disre.html %%DATADIR%%/html/online/g_dist.html +%%DATADIR%%/html/online/g_dos.html +%%DATADIR%%/html/online/g_dyecoupl.html %%DATADIR%%/html/online/g_dyndom.html %%DATADIR%%/html/online/g_enemat.html %%DATADIR%%/html/online/g_energy.html @@ -440,6 +442,8 @@ %%DATADIR%%/html/online/g_hbond.html %%DATADIR%%/html/online/g_helix.html %%DATADIR%%/html/online/g_helixorient.html +%%DATADIR%%/html/online/g_hydorder.html +%%DATADIR%%/html/online/g_kinetics.html %%DATADIR%%/html/online/g_lie.html %%DATADIR%%/html/online/g_mdmat.html %%DATADIR%%/html/online/g_membed.html @@ -449,7 +453,9 @@ %%DATADIR%%/html/online/g_nmeig.html %%DATADIR%%/html/online/g_nmens.html %%DATADIR%%/html/online/g_nmtraj.html +%%DATADIR%%/html/online/g_options.html %%DATADIR%%/html/online/g_order.html +%%DATADIR%%/html/online/g_pme_error.html %%DATADIR%%/html/online/g_polystat.html %%DATADIR%%/html/online/g_potential.html %%DATADIR%%/html/online/g_principal.html @@ -462,6 +468,7 @@ %%DATADIR%%/html/online/g_rotacf.html %%DATADIR%%/html/online/g_rotmat.html %%DATADIR%%/html/online/g_saltbr.html +%%DATADIR%%/html/online/g_sans.html %%DATADIR%%/html/online/g_sas.html %%DATADIR%%/html/online/g_select.html %%DATADIR%%/html/online/g_sgangle.html >Release-Note: >Audit-Trail: >Unformatted:
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