Date: Sun, 23 Aug 2020 08:19:44 GMT From: pkg-fallout@FreeBSD.org To: yuri@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - head-amd64-default][science/ergo] Failed for ergo-3.8 in build Message-ID: <202008230819.07N8JiAQ041278@beefy18.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: linimon@FreeBSD.org Ident: $FreeBSD: head/science/ergo/Makefile 535265 2020-05-15 04:25:56Z linimon $ Log URL: http://beefy18.nyi.freebsd.org/data/head-amd64-default/p545731_s364466/logs/ergo-3.8.log Build URL: http://beefy18.nyi.freebsd.org/build.html?mastername=head-amd64-default&build=p545731_s364466 Log: =>> Building science/ergo build started at Sun Aug 23 08:18:05 UTC 2020 port directory: /usr/ports/science/ergo package name: ergo-3.8 building for: FreeBSD head-amd64-default-job-10 13.0-CURRENT FreeBSD 13.0-CURRENT 1300110 amd64 maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: head/science/ergo/Makefile 535265 2020-05-15 04:25:56Z linimon $ Poudriere version: 3.2.8-5-gc81843e5 Host OSVERSION: 1300100 Jail OSVERSION: 1300110 Job Id: 10 !!! Jail is newer than host. (Jail: 1300110, Host: 1300100) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh OSVERSION=1300110 UNAME_v=FreeBSD 13.0-CURRENT 1300110 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-5-gc81843e5 MASTERMNT=/usr/local/poudriere/data/.m/head-amd64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-amd64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for ergo-3.8: SSE=on: Use SSE optimized routines ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --enable-sse-intrinsics --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/science/ergo/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/ergo/work HOME=/wrkdirs/usr/ports/science/ergo/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/ergo/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/ergo/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/ergo/work HOME=/wrkdirs/usr/ports/science/ergo/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/ergo/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -fstack-protector-strong " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/ergo" EXAMPLESDIR="share/examples/ergo" DATADIR="share/ergo" WWWDIR="www/ergo" ETCDIR="etc/ergo" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ergo DOCSDIR=/usr/local/share/doc/ergo EXAMPLESDIR=/usr/local/share/examples/ergo WWWDIR=/usr/local/www/ergo ETCDIR=/usr/local/etc/ergo --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 11.0.0 (git@github.com:llvm/llvm-project.git llvmorg-11.0.0-rc1-47-gff47911ddfc) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 11.0.0 (git@github.com:llvm/llvm-project.git llvmorg-11.0.0-rc1-47-gff47911ddfc) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 11.0.0 (git@github.com:llvm/llvm-project.git llvmorg-11.0.0-rc1-47-gff47911ddfc) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300110 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv3 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> ergo-3.8 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.14.7.txz [head-amd64-default-job-10] Installing pkg-1.14.7... [head-amd64-default-job-10] Extracting pkg-1.14.7: .......... done ===> ergo-3.8 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of ergo-3.8 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by ergo-3.8 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by ergo-3.8 for building => SHA256 Checksum OK for ergo-3.8.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by ergo-3.8 for building ===> Extracting for ergo-3.8 => SHA256 Checksum OK for ergo-3.8.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for ergo-3.8 ===> Applying FreeBSD patches for ergo-3.8 from /usr/ports/science/ergo/files =========================================================================== =======================<phase: build-depends >============================ ===> ergo-3.8 depends on package: gmake>=4.3 - not found ===> Installing existing package /packages/All/gmake-4.3_2.txz [head-amd64-default-job-10] Installing gmake-4.3_2... [head-amd64-default-job-10] `-- Installing gettext-runtime-0.21... [head-amd64-default-job-10] | `-- Installing indexinfo-0.3.1... [head-amd64-default-job-10] | `-- Extracting indexinfo-0.3.1: .... done [head-amd64-default-job-10] `-- Extracting gettext-runtime-0.21: .......... done <snip> mv -f .deps/test.Tpo .deps/test.Po c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong -o test test.o ../../../../source/utilities_basic/file_tools/src/libfiles.a -llapack -lpthread -lm -L/usr/local/lib -lblas gmake[6]: Leaving directory '/wrkdirs/usr/ports/science/ergo/work/ergo-3.8/source/utilities_basic/file_tools/test' gmake[6]: Entering directory '/wrkdirs/usr/ports/science/ergo/work/ergo-3.8/source/utilities_basic/file_tools' gmake[6]: Nothing to be done for 'all-am'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/science/ergo/work/ergo-3.8/source/utilities_basic/file_tools' gmake[5]: Leaving directory '/wrkdirs/usr/ports/science/ergo/work/ergo-3.8/source/utilities_basic/file_tools' gmake[5]: Entering directory '/wrkdirs/usr/ports/science/ergo/work/ergo-3.8/source/utilities_basic' c++ -DHAVE_CONFIG_H -I. -I../../source -I../../source -I../../source/matrix -I../../source/matrix/template_lapack/blas -I../../source/matrix/template_lapack/lapack -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT atom_labels.o -MD -MP -MF .deps/atom_labels.Tpo -c -o atom_labels.o atom_labels.cc cc -DHAVE_CONFIG_H -I. -I../../source -I../../source -I../../source/matrix -I../../source/matrix/template_lapack/blas -I../../source/matrix/template_lapack/lapack -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -MT barrier.o -MD -MP -MF .deps/barrier.Tpo -c -o barrier.o barrier.c mv -f .deps/barrier.Tpo .deps/barrier.Po c++ -DHAVE_CONFIG_H -I. -I../../source -I../../source -I../../source/matrix -I../../source/matrix/template_lapack/blas -I../../source/matrix/template_lapack/lapack -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT csr_matrix.o -MD -MP -MF .deps/csr_matrix.Tpo -c -o csr_matrix.o csr_matrix.cc mv -f .deps/atom_labels.Tpo .deps/atom_labels.Po c++ -DHAVE_CONFIG_H -I. -I../../source -I../../source -I../../source/matrix -I../../source/matrix/template_lapack/blas -I../../source/matrix/template_lapack/lapack -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT machine_epsilon.o -MD -MP -MF .deps/machine_epsilon.Tpo -c -o machine_epsilon.o machine_epsilon.cc mv -f .deps/machine_epsilon.Tpo .deps/machine_epsilon.Po c++ -DHAVE_CONFIG_H -I. -I../../source -I../../source -I../../source/matrix -I../../source/matrix/template_lapack/blas -I../../source/matrix/template_lapack/lapack -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT matrix_algebra.o -MD -MP -MF .deps/matrix_algebra.Tpo -c -o matrix_algebra.o matrix_algebra.cc mv -f .deps/csr_matrix.Tpo .deps/csr_matrix.Po c++ -DHAVE_CONFIG_H -I. -I../../source -I../../source -I../../source/matrix -I../../source/matrix/template_lapack/blas -I../../source/matrix/template_lapack/lapack -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT memorymanag.o -MD -MP -MF .deps/memorymanag.Tpo -c -o memorymanag.o memorymanag.cc mv -f .deps/memorymanag.Tpo .deps/memorymanag.Po c++ -DHAVE_CONFIG_H -I. -I../../source -I../../source -I../../source/matrix -I../../source/matrix/template_lapack/blas -I../../source/matrix/template_lapack/lapack -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT molecule.o -MD -MP -MF .deps/molecule.Tpo -c -o molecule.o molecule.cc mv -f .deps/matrix_algebra.Tpo .deps/matrix_algebra.Po c++ -DHAVE_CONFIG_H -I. -I../../source -I../../source -I../../source/matrix -I../../source/matrix/template_lapack/blas -I../../source/matrix/template_lapack/lapack -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT output.o -MD -MP -MF .deps/output.Tpo -c -o output.o output.cc mv -f .deps/output.Tpo .deps/output.Po c++ -DHAVE_CONFIG_H -I. -I../../source -I../../source -I../../source/matrix -I../../source/matrix/template_lapack/blas -I../../source/matrix/template_lapack/lapack -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT solve_lin_eq_syst.o -MD -MP -MF .deps/solve_lin_eq_syst.Tpo -c -o solve_lin_eq_syst.o solve_lin_eq_syst.cc mv -f .deps/molecule.Tpo .deps/molecule.Po c++ -DHAVE_CONFIG_H -I. -I../../source -I../../source -I../../source/matrix -I../../source/matrix/template_lapack/blas -I../../source/matrix/template_lapack/lapack -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT utilities.o -MD -MP -MF .deps/utilities.Tpo -c -o utilities.o utilities.cc mv -f .deps/utilities.Tpo .deps/utilities.Po c++ -DHAVE_CONFIG_H -I. -I../../source -I../../source -I../../source/matrix -I../../source/matrix/template_lapack/blas -I../../source/matrix/template_lapack/lapack -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT xyz_file_parser.o -MD -MP -MF .deps/xyz_file_parser.Tpo -c -o xyz_file_parser.o xyz_file_parser.cc mv -f .deps/solve_lin_eq_syst.Tpo .deps/solve_lin_eq_syst.Po mv -f .deps/xyz_file_parser.Tpo .deps/xyz_file_parser.Po rm -f libutilities_basic.a ar cru libutilities_basic.a atom_labels.o barrier.o csr_matrix.o machine_epsilon.o matrix_algebra.o memorymanag.o molecule.o output.o solve_lin_eq_syst.o utilities.o xyz_file_parser.o ranlib libutilities_basic.a gmake[5]: Leaving directory '/wrkdirs/usr/ports/science/ergo/work/ergo-3.8/source/utilities_basic' gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/ergo/work/ergo-3.8/source/utilities_basic' Making all in matrix gmake[4]: Entering directory '/wrkdirs/usr/ports/science/ergo/work/ergo-3.8/source/matrix' Making all in template_lapack gmake[5]: Entering directory '/wrkdirs/usr/ports/science/ergo/work/ergo-3.8/source/matrix/template_lapack' Making all in blas gmake[6]: Entering directory '/wrkdirs/usr/ports/science/ergo/work/ergo-3.8/source/matrix/template_lapack/blas' c++ -DHAVE_CONFIG_H -I. -I../../../../source -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT template_blas_test.o -MD -MP -MF .deps/template_blas_test.Tpo -c -o template_blas_test.o template_blas_test.cc c++ -DHAVE_CONFIG_H -I. -I../../../../source -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT template_blas_basicmath.o -MD -MP -MF .deps/template_blas_basicmath.Tpo -c -o template_blas_basicmath.o template_blas_basicmath.cc mv -f .deps/template_blas_basicmath.Tpo .deps/template_blas_basicmath.Po c++ -DHAVE_CONFIG_H -I. -I../../../../source -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT template_blas_common.o -MD -MP -MF .deps/template_blas_common.Tpo -c -o template_blas_common.o template_blas_common.cc mv -f .deps/template_blas_common.Tpo .deps/template_blas_common.Po c++ -DHAVE_CONFIG_H -I. -I../../../../source -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT template_blas_test_threaded.o -MD -MP -MF .deps/template_blas_test_threaded.Tpo -c -o template_blas_test_threaded.o template_blas_test_threaded.cc mv -f .deps/template_blas_test.Tpo .deps/template_blas_test.Po rm -f libtemplateblas.a ar cru libtemplateblas.a template_blas_basicmath.o template_blas_common.o template_blas_test.o ranlib libtemplateblas.a c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong -o templateblastest template_blas_test.o libtemplateblas.a -llapack -lpthread -lm -L/usr/local/lib -lblas mv -f .deps/template_blas_test_threaded.Tpo .deps/template_blas_test_threaded.Po c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong -o templateblastest_threaded template_blas_test_threaded.o libtemplateblas.a -llapack -lpthread -lm -L/usr/local/lib -lblas gmake[6]: Leaving directory '/wrkdirs/usr/ports/science/ergo/work/ergo-3.8/source/matrix/template_lapack/blas' Making all in lapack gmake[6]: Entering directory '/wrkdirs/usr/ports/science/ergo/work/ergo-3.8/source/matrix/template_lapack/lapack' c++ -DHAVE_CONFIG_H -I. -I../../../../source -I../../../../source/matrix/template_lapack/blas -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT template_lapack_test.o -MD -MP -MF .deps/template_lapack_test.Tpo -c -o template_lapack_test.o template_lapack_test.cc c++ -DHAVE_CONFIG_H -I. -I../../../../source -I../../../../source/matrix/template_lapack/blas -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT template_lapack_common.o -MD -MP -MF .deps/template_lapack_common.Tpo -c -o template_lapack_common.o template_lapack_common.cc mv -f .deps/template_lapack_common.Tpo .deps/template_lapack_common.Po c++ -DHAVE_CONFIG_H -I. -I../../../../source -I../../../../source/matrix/template_lapack/blas -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT template_lapack_test_threaded.o -MD -MP -MF .deps/template_lapack_test_threaded.Tpo -c -o template_lapack_test_threaded.o template_lapack_test_threaded.cc mv -f .deps/template_lapack_test.Tpo .deps/template_lapack_test.Po rm -f libtemplatelapack.a ar cru libtemplatelapack.a template_lapack_common.o template_lapack_test.o ranlib libtemplatelapack.a c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong -o templatelapacktest template_lapack_test.o libtemplatelapack.a ../../../../source/matrix/template_lapack/blas/libtemplateblas.a -llapack -lpthread -lm -L/usr/local/lib -lblas mv -f .deps/template_lapack_test_threaded.Tpo .deps/template_lapack_test_threaded.Po c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong -o templatelapacktest_threaded template_lapack_test_threaded.o libtemplatelapack.a ../../../../source/matrix/template_lapack/blas/libtemplateblas.a -llapack -lpthread -lm -L/usr/local/lib -lblas gmake[6]: Leaving directory '/wrkdirs/usr/ports/science/ergo/work/ergo-3.8/source/matrix/template_lapack/lapack' gmake[6]: Entering directory '/wrkdirs/usr/ports/science/ergo/work/ergo-3.8/source/matrix/template_lapack' gmake[6]: Nothing to be done for 'all-am'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/science/ergo/work/ergo-3.8/source/matrix/template_lapack' gmake[5]: Leaving directory '/wrkdirs/usr/ports/science/ergo/work/ergo-3.8/source/matrix/template_lapack' gmake[5]: Entering directory '/wrkdirs/usr/ports/science/ergo/work/ergo-3.8/source/matrix' c++ -DHAVE_CONFIG_H -I. -I../../source -I../../source/matrix/template_lapack/blas -I../../source/matrix/template_lapack/lapack -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT API_test.o -MD -MP -MF .deps/API_test.Tpo -c -o API_test.o API_test.cc c++ -DHAVE_CONFIG_H -I. -I../../source -I../../source/matrix/template_lapack/blas -I../../source/matrix/template_lapack/lapack -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT SizesAndBlocks.o -MD -MP -MF .deps/SizesAndBlocks.Tpo -c -o SizesAndBlocks.o SizesAndBlocks.cc mv -f .deps/SizesAndBlocks.Tpo .deps/SizesAndBlocks.Po c++ -DHAVE_CONFIG_H -I. -I../../source -I../../source/matrix/template_lapack/blas -I../../source/matrix/template_lapack/lapack -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT mat_gblas.o -MD -MP -MF .deps/mat_gblas.Tpo -c -o mat_gblas.o mat_gblas.cc API_test.cc:274:12: warning: 'random_shuffle<std::__1::__wrap_iter<int *>>' is deprecated [-Wdeprecated-declarations] std::random_shuffle ( permutationVec.begin(), permutationVec.end() ); ^ /usr/include/c++/v1/algorithm:3095:1: note: 'random_shuffle<std::__1::__wrap_iter<int *>>' has been explicitly marked deprecated here _LIBCPP_DEPRECATED_IN_CXX14 void ^ /usr/include/c++/v1/__config:991:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX14' # define _LIBCPP_DEPRECATED_IN_CXX14 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:974:48: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) ^ API_test.cc:406:12: warning: 'random_shuffle<std::__1::__wrap_iter<int *>>' is deprecated [-Wdeprecated-declarations] std::random_shuffle ( permutationVec.begin(), permutationVec.end() ); ^ /usr/include/c++/v1/algorithm:3095:1: note: 'random_shuffle<std::__1::__wrap_iter<int *>>' has been explicitly marked deprecated here _LIBCPP_DEPRECATED_IN_CXX14 void ^ /usr/include/c++/v1/__config:991:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX14' # define _LIBCPP_DEPRECATED_IN_CXX14 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:974:48: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) ^ API_test.cc:550:12: warning: 'random_shuffle<std::__1::__wrap_iter<int *>>' is deprecated [-Wdeprecated-declarations] std::random_shuffle ( perm.begin(), perm.end() ); ^ /usr/include/c++/v1/algorithm:3095:1: note: 'random_shuffle<std::__1::__wrap_iter<int *>>' has been explicitly marked deprecated here _LIBCPP_DEPRECATED_IN_CXX14 void ^ /usr/include/c++/v1/__config:991:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX14' # define _LIBCPP_DEPRECATED_IN_CXX14 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:974:48: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) ^ API_test.cc:617:12: warning: 'random_shuffle<std::__1::__wrap_iter<int *>>' is deprecated [-Wdeprecated-declarations] std::random_shuffle ( permutationVec.begin(), permutationVec.end() ); ^ /usr/include/c++/v1/algorithm:3095:1: note: 'random_shuffle<std::__1::__wrap_iter<int *>>' has been explicitly marked deprecated here _LIBCPP_DEPRECATED_IN_CXX14 void ^ /usr/include/c++/v1/__config:991:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX14' # define _LIBCPP_DEPRECATED_IN_CXX14 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:974:48: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) ^ mv -f .deps/mat_gblas.Tpo .deps/mat_gblas.Po c++ -DHAVE_CONFIG_H -I. -I../../source -I../../source/matrix/template_lapack/blas -I../../source/matrix/template_lapack/lapack -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT FileWritable.o -MD -MP -MF .deps/FileWritable.Tpo -c -o FileWritable.o FileWritable.cc mv -f .deps/FileWritable.Tpo .deps/FileWritable.Po c++ -DHAVE_CONFIG_H -I. -I../../source -I../../source/matrix/template_lapack/blas -I../../source/matrix/template_lapack/lapack -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT matInclude.o -MD -MP -MF .deps/matInclude.Tpo -c -o matInclude.o matInclude.cc mv -f .deps/matInclude.Tpo .deps/matInclude.Po c++ -DHAVE_CONFIG_H -I. -I../../source -I../../source/matrix/template_lapack/blas -I../../source/matrix/template_lapack/lapack -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT AllocatorManager.o -MD -MP -MF .deps/AllocatorManager.Tpo -c -o AllocatorManager.o AllocatorManager.cc mv -f .deps/AllocatorManager.Tpo .deps/AllocatorManager.Po c++ -DHAVE_CONFIG_H -I. -I../../source -I../../source/matrix/template_lapack/blas -I../../source/matrix/template_lapack/lapack -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT allocate.o -MD -MP -MF .deps/allocate.Tpo -c -o allocate.o allocate.cc mv -f .deps/allocate.Tpo .deps/allocate.Po c++ -DHAVE_CONFIG_H -I. -I../../source -I../../source/matrix/template_lapack/blas -I../../source/matrix/template_lapack/lapack -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT Memory_buffer_thread.o -MD -MP -MF .deps/Memory_buffer_thread.Tpo -c -o Memory_buffer_thread.o Memory_buffer_thread.cc mv -f .deps/Memory_buffer_thread.Tpo .deps/Memory_buffer_thread.Po c++ -DHAVE_CONFIG_H -I. -I../../source -I../../source/matrix/template_lapack/blas -I../../source/matrix/template_lapack/lapack -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT test_LanczosSeveralLargestEig.o -MD -MP -MF .deps/test_LanczosSeveralLargestEig.Tpo -c -o test_LanczosSeveralLargestEig.o test_LanczosSeveralLargestEig.cc mv -f .deps/test_LanczosSeveralLargestEig.Tpo .deps/test_LanczosSeveralLargestEig.Po c++ -DHAVE_CONFIG_H -I. -I../../source -I../../source/matrix/template_lapack/blas -I../../source/matrix/template_lapack/lapack -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT test_vector.o -MD -MP -MF .deps/test_vector.Tpo -c -o test_vector.o test_vector.cc mv -f .deps/test_vector.Tpo .deps/test_vector.Po c++ -DHAVE_CONFIG_H -I. -I../../source -I../../source/matrix/template_lapack/blas -I../../source/matrix/template_lapack/lapack -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT testOmpFail.o -MD -MP -MF .deps/testOmpFail.Tpo -c -o testOmpFail.o testOmpFail.cc mv -f .deps/testOmpFail.Tpo .deps/testOmpFail.Po c++ -DHAVE_CONFIG_H -I. -I../../source -I../../source/matrix/template_lapack/blas -I../../source/matrix/template_lapack/lapack -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT bench.o -MD -MP -MF .deps/bench.Tpo -c -o bench.o bench.cc mv -f .deps/bench.Tpo .deps/bench.Po c++ -DHAVE_CONFIG_H -I. -I../../source -I../../source/matrix/template_lapack/blas -I../../source/matrix/template_lapack/lapack -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT bench_gemm_only.o -MD -MP -MF .deps/bench_gemm_only.Tpo -c -o bench_gemm_only.o bench_gemm_only.cc mv -f .deps/bench_gemm_only.Tpo .deps/bench_gemm_only.Po c++ -DHAVE_CONFIG_H -I. -I../../source -I../../source/matrix/template_lapack/blas -I../../source/matrix/template_lapack/lapack -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT blastime.o -MD -MP -MF .deps/blastime.Tpo -c -o blastime.o blastime.cc mv -f .deps/blastime.Tpo .deps/blastime.Po c++ -DHAVE_CONFIG_H -I. -I../../source -I../../source/matrix/template_lapack/blas -I../../source/matrix/template_lapack/lapack -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT Perturb_Test.o -MD -MP -MF .deps/Perturb_Test.Tpo -c -o Perturb_Test.o Perturb_Test.cc mv -f .deps/Perturb_Test.Tpo .deps/Perturb_Test.Po rm -f libmat.a ar cru libmat.a SizesAndBlocks.o mat_gblas.o FileWritable.o matInclude.o AllocatorManager.o allocate.o Memory_buffer_thread.o ranlib libmat.a c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong -o omptest testOmpFail.o -llapack -lpthread -lm -L/usr/local/lib -lblas c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong -o matbench bench.o libmat.a ../../source/matrix/template_lapack/blas/libtemplateblas.a ../../source/matrix/template_lapack/lapack/libtemplatelapack.a -llapack -lpthread -lm -L/usr/local/lib -lblas c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong -o matbenchgemm bench_gemm_only.o libmat.a ../../source/matrix/template_lapack/blas/libtemplateblas.a ../../source/matrix/template_lapack/lapack/libtemplatelapack.a -llapack -lpthread -lm -L/usr/local/lib -lblas c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong -o blastime blastime.o libmat.a ../../source/matrix/template_lapack/blas/libtemplateblas.a ../../source/matrix/template_lapack/lapack/libtemplatelapack.a -llapack -lpthread -lm -L/usr/local/lib -lblas c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong -o perturbtest Perturb_Test.o libmat.a ../../source/matrix/template_lapack/blas/libtemplateblas.a ../../source/matrix/template_lapack/lapack/libtemplatelapack.a -llapack -lpthread -lm -L/usr/local/lib -lblas c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong -o mattest_lan test_LanczosSeveralLargestEig.o libmat.a ../../source/matrix/template_lapack/blas/libtemplateblas.a ../../source/matrix/template_lapack/lapack/libtemplatelapack.a -llapack -lpthread -lm -L/usr/local/lib -lblas c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong -o test_vector test_vector.o libmat.a ../../source/matrix/template_lapack/blas/libtemplateblas.a ../../source/matrix/template_lapack/lapack/libtemplatelapack.a -llapack -lpthread -lm -L/usr/local/lib -lblas 4 warnings generated. mv -f .deps/API_test.Tpo .deps/API_test.Po c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong -o mattest API_test.o libmat.a ../../source/matrix/template_lapack/blas/libtemplateblas.a ../../source/matrix/template_lapack/lapack/libtemplatelapack.a -llapack -lpthread -lm -L/usr/local/lib -lblas ld: error: undefined symbol: std::__1::__rs_get() >>> referenced by API_test.cc >>> API_test.o:(void std::__1::random_shuffle<std::__1::__wrap_iter<int*> >(std::__1::__wrap_iter<int*>, std::__1::__wrap_iter<int*>)) ld: error: undefined symbol: std::__1::__rs_default::~__rs_default() >>> referenced by API_test.cc >>> API_test.o:(void std::__1::random_shuffle<std::__1::__wrap_iter<int*> >(std::__1::__wrap_iter<int*>, std::__1::__wrap_iter<int*>)) >>> referenced by API_test.cc >>> API_test.o:(void std::__1::random_shuffle<std::__1::__wrap_iter<int*> >(std::__1::__wrap_iter<int*>, std::__1::__wrap_iter<int*>)) ld: error: undefined symbol: std::__1::__rs_default::operator()() >>> referenced by API_test.cc >>> API_test.o:(long std::__1::uniform_int_distribution<long>::operator()<std::__1::__rs_default>(std::__1::__rs_default&, std::__1::uniform_int_distribution<long>::param_type const&)) >>> referenced by API_test.cc >>> API_test.o:(long std::__1::uniform_int_distribution<long>::operator()<std::__1::__rs_default>(std::__1::__rs_default&, std::__1::uniform_int_distribution<long>::param_type const&)) >>> referenced by API_test.cc >>> API_test.o:(long std::__1::uniform_int_distribution<long>::operator()<std::__1::__rs_default>(std::__1::__rs_default&, std::__1::uniform_int_distribution<long>::param_type const&)) >>> referenced 1 more times c++: error: linker command failed with exit code 1 (use -v to see invocation) gmake[5]: *** [Makefile:753: mattest] Error 1 gmake[5]: Leaving directory '/wrkdirs/usr/ports/science/ergo/work/ergo-3.8/source/matrix' gmake[4]: *** [Makefile:820: all-recursive] Error 1 gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/ergo/work/ergo-3.8/source/matrix' gmake[3]: *** [Makefile:637: all-recursive] Error 1 gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/ergo/work/ergo-3.8/source' gmake[2]: *** [Makefile:467: all] Error 2 gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/ergo/work/ergo-3.8/source' gmake[1]: *** [Makefile:346: all-recursive] Error 1 gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/ergo/work/ergo-3.8' ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/science/ergo
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